RNA–Protein interactions for RNA: YER100W

UBC6, Transcript of Ubiquitin-conjugating enzyme involved in ERAD, yeastyeast

Gene UBC6, Length 753 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBC6YER100W DRS1P32892 752 aaKnown RBP12.93□□□□□ -0.34
UBC6YER100W FAP1P53971 965 aa12.67□□□□□ -0.38
UBC6YER100W MTC1P47018 478 aaKnown RBP12.33□□□□□ -0.44
UBC6YER100W PRY3P47033 881 aa12□□□□□ -0.49
UBC6YER100W BFR2Q06631 534 aaKnown RBP11.52□□□□□ -0.57
UBC6YER100W TFA1P36100 482 aa11.45□□□□□ -0.58
UBC6YER100W YCK3P39962 524 aa11.44□□□□□ -0.58
UBC6YER100W AAD16Q02895 342 aa11.22□□□□□ -0.61
UBC6YER100W HAA1Q12753 694 aaKnown RBP11.11□□□□□ -0.63
UBC6YER100W PRI1P10363 409 aa11.1□□□□□ -0.63
UBC6YER100W AVT3P36062 692 aa10.89□□□□□ -0.67
UBC6YER100W DIP2Q12220 943 aaPredicted RBP10.77□□□□□ -0.69
UBC6YER100W RQC2Q12532 1038 aaKnown RBP10.55□□□□□ -0.72
UBC6YER100W RPG1P38249 964 aaKnown RBP10.45□□□□□ -0.74
UBC6YER100W TSR3Q12094 313 aaKnown RBP10.45□□□□□ -0.74
UBC6YER100W ISW2Q08773 1120 aa10.44□□□□□ -0.74
UBC6YER100W RSE1Q04693 1361 aaKnown RBP9.98□□□□□ -0.81
UBC6YER100W MRPL32P25348 183 aa9.97□□□□□ -0.81
UBC6YER100W YGL015CP33199 130 aa9.97□□□□□ -0.81
UBC6YER100W BUD31P25337 157 aaPredicted RBP9.89□□□□□ -0.83
UBC6YER100W DMA1P38823 416 aa9.63□□□□□ -0.87
UBC6YER100W TAF7Q05021 590 aa9.6□□□□□ -0.87
UBC6YER100W RPL17AP05740 184 aaKnown RBP9.51□□□□□ -0.89
UBC6YER100W RPL17BP46990 184 aaKnown RBP9.51□□□□□ -0.89
UBC6YER100W PTP3P40048 928 aa9.37□□□□□ -0.91
UBC6YER100W REB1P21538 810 aa9.35□□□□□ -0.91
UBC6YER100W RIM101P33400 625 aa9.35□□□□□ -0.91
UBC6YER100W CDC27P38042 758 aa9.35□□□□□ -0.91
UBC6YER100W SPT21P35209 758 aa9.3□□□□□ -0.92
UBC6YER100W LEO1P38439 464 aa9.3□□□□□ -0.92
UBC6YER100W SSP1P38871 571 aa9.24□□□□□ -0.93
UBC6YER100W SIS1P25294 352 aaKnown RBP9.23□□□□□ -0.93
UBC6YER100W MAP2P38174 421 aaKnown RBP9.17□□□□□ -0.94
UBC6YER100W UBP10P53874 792 aaPredicted RBP9.11□□□□□ -0.95
UBC6YER100W OXP1P28273 1286 aa9.04□□□□□ -0.96
UBC6YER100W ARP8Q12386 881 aaKnown RBP RIP-Chip data9.04□□□□□ -0.96not detected
UBC6YER100W LEU3P08638 886 aa9.02□□□□□ -0.97
UBC6YER100W SAS10Q12136 610 aaPredicted RBP9.02□□□□□ -0.97
UBC6YER100W YKR023WP36119 530 aaKnown RBP9.01□□□□□ -0.97
UBC6YER100W YLR271WQ06152 274 aa8.92□□□□□ -0.98
UBC6YER100W YAH1Q12184 172 aaKnown RBP8.91□□□□□ -0.98
UBC6YER100W DCD1P06773 312 aa8.9□□□□□ -0.98
UBC6YER100W UBP9P39967 754 aa8.89□□□□□ -0.99
UBC6YER100W YIL055CP40523 627 aaKnown RBP8.88□□□□□ -0.99
UBC6YER100W HOP09932 586 aa8.86□□□□□ -0.99
UBC6YER100W MGA2P40578 1113 aa8.86□□□□□ -0.99
UBC6YER100W TFC8Q12308 588 aa8.8□□□□□ -1
UBC6YER100W RSM7P47150 247 aa8.78□□□□□ -1
UBC6YER100W SCY1P53009 804 aa8.77□□□□□ -1.01
UBC6YER100W TIF4632P39936 914 aaKnown RBP8.73□□□□□ -1.01
UBC6YER100W TGL3P40308 642 aa8.73□□□□□ -1.01
UBC6YER100W RPN1P38764 993 aaKnown RBP8.68□□□□□ -1.02
UBC6YER100W SLX5P32828 619 aaKnown RBP8.67□□□□□ -1.02
UBC6YER100W CST9Q06032 482 aa8.66□□□□□ -1.02
UBC6YER100W PSD2P53037 1138 aaKnown RBP8.64□□□□□ -1.03
UBC6YER100W AI2P03876 854 aa8.55□□□□□ -1.04
UBC6YER100W CKB1P43639 278 aa8.55□□□□□ -1.04
UBC6YER100W YPR148CQ06523 435 aa8.53□□□□□ -1.04
UBC6YER100W DMA2P53924 522 aa8.52□□□□□ -1.05
UBC6YER100W IFH1P39520 1085 aa8.5□□□□□ -1.05
UBC6YER100W RAM2P29703 316 aa8.49□□□□□ -1.05
UBC6YER100W BCH2P36122 765 aa8.49□□□□□ -1.05
UBC6YER100W SET1P38827 1080 aaKnown RBP8.48□□□□□ -1.05
UBC6YER100W BBC1P47068 1157 aa8.46□□□□□ -1.06
UBC6YER100W SPB4P25808 606 aaPredicted RBP8.45□□□□□ -1.06
UBC6YER100W RLF2Q12495 606 aa8.41□□□□□ -1.06
UBC6YER100W VPS70P47161 811 aa8.4□□□□□ -1.06
UBC6YER100W YBL029C-AQ3E756 94 aa8.37□□□□□ -1.07
UBC6YER100W DSF2P38213 736 aa8.36□□□□□ -1.07
UBC6YER100W ABP1P15891 592 aaKnown RBP8.33□□□□□ -1.08
UBC6YER100W MAK11P20484 414 aaKnown RBP8.32□□□□□ -1.08
UBC6YER100W MRM1P25270 412 aa8.3□□□□□ -1.08
UBC6YER100W RTG3P38165 486 aa8.3□□□□□ -1.08
UBC6YER100W EPS1P40557 701 aa8.3□□□□□ -1.08
UBC6YER100W YNR021WP53723 404 aaKnown RBP8.3□□□□□ -1.08
UBC6YER100W RCR1P38212 213 aa8.28□□□□□ -1.08
UBC6YER100W PBS2P08018 668 aa8.27□□□□□ -1.09
UBC6YER100W NOP53Q12080 455 aaKnown RBP8.27□□□□□ -1.09
UBC6YER100W KIN1P13185 1064 aa8.24□□□□□ -1.09
UBC6YER100W MST1P07236 462 aa8.23□□□□□ -1.09
UBC6YER100W BDF1P35817 686 aa8.23□□□□□ -1.09
UBC6YER100W AIM7Q12156 149 aa8.23□□□□□ -1.09
UBC6YER100W HGH1P48362 394 aaKnown RBP8.22□□□□□ -1.09
UBC6YER100W VNX1P42839 908 aa8.18□□□□□ -1.1
UBC6YER100W COQ8P27697 501 aa8.17□□□□□ -1.1
UBC6YER100W MAM3Q12296 706 aa8.17□□□□□ -1.1
UBC6YER100W REF2P42073 533 aaPredicted RBP8.15□□□□□ -1.1
UBC6YER100W YOR238WQ08634 303 aa8.15□□□□□ -1.1
UBC6YER100W VPS29P38759 282 aa8.14□□□□□ -1.11
UBC6YER100W MAK21Q12176 1025 aaKnown RBP8.13□□□□□ -1.11
UBC6YER100W AIR2Q12476 344 aaKnown RBP8.13□□□□□ -1.11
UBC6YER100W GLC3P32775 704 aa8.11□□□□□ -1.11
UBC6YER100W NUP42P49686 430 aaKnown RBP8.11□□□□□ -1.11
UBC6YER100W IES2P40154 320 aa8.1□□□□□ -1.11
UBC6YER100W SPP1Q03012 353 aa8.09□□□□□ -1.11
UBC6YER100W DIT2P21595 489 aa8.06□□□□□ -1.12
UBC6YER100W WSC3Q12215 556 aa8.06□□□□□ -1.12
UBC6YER100W YMR1P47147 688 aaKnown RBP RIP-Chip data8.05□□□□□ -1.12not detected
UBC6YER100W HPC2Q01448 625 aa8.05□□□□□ -1.12
UBC6YER100W COX6P00427 148 aa8.04□□□□□ -1.12
Retrieved 100 of 5,963 RNA–protein pairs in 14.4 ms