RNA–Protein interactions for RNA: YAL040C

CLN3, Transcript of G1 cyclin involved in cell cycle progression, yeast

Gene CLN3, Length 1,743 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CLN3	YAL040C	RAM2	P29703	316 aa		4.47	□□□□□ -1.69
CLN3	YAL040C	DAN4	P47179	1161 aa		4.47	□□□□□ -1.69
CLN3	YAL040C	GRE2	Q12068	342 aa	Known RBP	4.47	□□□□□ -1.69
CLN3	YAL040C	MIF2	P35201	549 aa		4.46	□□□□□ -1.69
CLN3	YAL040C	PTC4	P38089	393 aa		4.46	□□□□□ -1.7
CLN3	YAL040C	YEL023C	P39992	682 aa		4.46	□□□□□ -1.7
CLN3	YAL040C	YDL129W	Q07555	291 aa		4.45	□□□□□ -1.7
CLN3	YAL040C	SAP30	P38429	201 aa		4.44	□□□□□ -1.7
CLN3	YAL040C	ATH1	P48016	1211 aa		4.44	□□□□□ -1.7
CLN3	YAL040C	GUT1	P32190	709 aa		4.43	□□□□□ -1.7
CLN3	YAL040C	PTC3	P34221	468 aa	Known RBP	4.43	□□□□□ -1.7
CLN3	YAL040C	BCK2	P33306	851 aa		4.42	□□□□□ -1.7
CLN3	YAL040C	EDS1	P38073	919 aa		4.42	□□□□□ -1.7
CLN3	YAL040C	COQ8	P27697	501 aa		4.41	□□□□□ -1.7
CLN3	YAL040C	CHL1	P22516	861 aa	Predicted RBP	4.39	□□□□□ -1.71
CLN3	YAL040C	PRE3	P38624	215 aa		4.38	□□□□□ -1.71
CLN3	YAL040C	NOP53	Q12080	455 aa	Known RBP	4.38	□□□□□ -1.71
CLN3	YAL040C	PML39	Q03760	334 aa		4.37	□□□□□ -1.71
CLN3	YAL040C	NST1	P53935	1240 aa		4.34	□□□□□ -1.71
CLN3	YAL040C	ELP4	Q02884	456 aa	Known RBP	4.34	□□□□□ -1.71
CLN3	YAL040C	AI4	P03878	556 aa		4.33	□□□□□ -1.72
CLN3	YAL040C	MPH3	P0CE00	602 aa		4.33	□□□□□ -1.72
CLN3	YAL040C	SOL3	P38858	249 aa		4.32	□□□□□ -1.72
CLN3	YAL040C	PEX29	Q03370	554 aa		4.32	□□□□□ -1.72
CLN3	YAL040C	ARH1	P48360	493 aa		4.31	□□□□□ -1.72
CLN3	YAL040C	YGR273C	P53329	174 aa		4.3	□□□□□ -1.72
CLN3	YAL040C	MID1	P41821	548 aa		4.29	□□□□□ -1.72
CLN3	YAL040C	ILV3	P39522	585 aa	Known RBP	4.29	□□□□□ -1.72
CLN3	YAL040C	YDR344C	Q05510	147 aa		4.28	□□□□□ -1.72
CLN3	YAL040C	SPT23	P35210	1082 aa		4.27	□□□□□ -1.73
CLN3	YAL040C	VRP1	P37370	817 aa		4.27	□□□□□ -1.73
CLN3	YAL040C	XDJ1	P39102	459 aa		4.26	□□□□□ -1.73
CLN3	YAL040C	HAP5	Q02516	242 aa		4.26	□□□□□ -1.73
CLN3	YAL040C	SET1	P38827	1080 aa	Known RBP	4.25	□□□□□ -1.73
CLN3	YAL040C	BNI4	P53858	892 aa		4.24	□□□□□ -1.73
CLN3	YAL040C	MPC54	Q08550	464 aa		4.24	□□□□□ -1.73
CLN3	YAL040C	SLI15	P38283	698 aa		4.22	□□□□□ -1.73
CLN3	YAL040C	KEX1	P09620	729 aa		4.21	□□□□□ -1.73
CLN3	YAL040C	PTC2	P39966	464 aa	Known RBP	4.21	□□□□□ -1.73
CLN3	YAL040C	DPL1	Q05567	589 aa		4.21	□□□□□ -1.73
CLN3	YAL040C	IFH1	P39520	1085 aa		4.2	□□□□□ -1.74
CLN3	YAL040C	NMA111	P53920	997 aa		4.2	□□□□□ -1.74
CLN3	YAL040C	YML082W	Q04533	649 aa	Known RBP	4.2	□□□□□ -1.74
CLN3	YAL040C	RPP1B	P10622	106 aa	Known RBP	4.18	□□□□□ -1.74
CLN3	YAL040C	VHR2	P40041	505 aa		4.18	□□□□□ -1.74
CLN3	YAL040C	YLR326W	Q06170	240 aa	Known RBP	4.18	□□□□□ -1.74
CLN3	YAL040C	ISU2	Q12056	156 aa		4.18	□□□□□ -1.74
CLN3	YAL040C	DPS1	P04802	557 aa	Known RBP	4.17	□□□□□ -1.74
CLN3	YAL040C	RAD54	P32863	898 aa		4.17	□□□□□ -1.74
CLN3	YAL040C	UBP14	P38237	781 aa	Known RBP	4.17	□□□□□ -1.74
CLN3	YAL040C	CDC73	Q06697	393 aa		4.15	□□□□□ -1.75
CLN3	YAL040C	KIC1	P38692	1080 aa		4.14	□□□□□ -1.75
CLN3	YAL040C	RQC2	Q12532	1038 aa	Known RBP	4.14	□□□□□ -1.75
CLN3	YAL040C	PCS60	P38137	543 aa	Known RBP RIP-Chip data	4.13	□□□□□ -1.75	not detected
CLN3	YAL040C	YPR148C	Q06523	435 aa		4.12	□□□□□ -1.75
CLN3	YAL040C	SGS1	P35187	1447 aa		4.11	□□□□□ -1.75
CLN3	YAL040C	REF2	P42073	533 aa	Predicted RBP	4.11	□□□□□ -1.75
CLN3	YAL040C	RAM1	P22007	431 aa		4.1	□□□□□ -1.75
CLN3	YAL040C	SRC1	Q03707	834 aa		4.1	□□□□□ -1.75
CLN3	YAL040C	YDR090C	Q03193	310 aa		4.09	□□□□□ -1.75
CLN3	YAL040C	GYP1	Q08484	637 aa		4.09	□□□□□ -1.75
CLN3	YAL040C	YPR015C	Q12531	247 aa		4.09	□□□□□ -1.75
CLN3	YAL040C	PEX21	P50091	288 aa		4.09	□□□□□ -1.76
CLN3	YAL040C	PDR1	P12383	1068 aa		4.08	□□□□□ -1.76
CLN3	YAL040C	VPS70	P47161	811 aa		4.07	□□□□□ -1.76
CLN3	YAL040C	SAS4	Q04003	481 aa		4.07	□□□□□ -1.76
CLN3	YAL040C	CSC1	Q06538	782 aa		4.07	□□□□□ -1.76
CLN3	YAL040C	TFB4	Q12004	338 aa		4.07	□□□□□ -1.76
CLN3	YAL040C	MAK21	Q12176	1025 aa	Known RBP	4.07	□□□□□ -1.76
CLN3	YAL040C	MON2	P48563	1636 aa	Predicted RBP	4.05	□□□□□ -1.76
CLN3	YAL040C	YPL062W	Q02781	134 aa		4.05	□□□□□ -1.76
CLN3	YAL040C	YRR1	Q12172	810 aa		4.05	□□□□□ -1.76
CLN3	YAL040C	TY1B-DR4	Q07793	1604 aa		4.05	□□□□□ -1.76
CLN3	YAL040C	GAP1	P19145	602 aa	Predicted RBP	4.04	□□□□□ -1.76
CLN3	YAL040C	AMS1	P22855	1083 aa		4.04	□□□□□ -1.76
CLN3	YAL040C	INO80	P53115	1489 aa		4.03	□□□□□ -1.76
CLN3	YAL040C	COX6	P00427	148 aa		4.03	□□□□□ -1.76
CLN3	YAL040C	RAS1	P01119	309 aa		4.03	□□□□□ -1.76
CLN3	YAL040C	ORC6	P38826	435 aa		4.03	□□□□□ -1.76
CLN3	YAL040C	YEL077C	Q3E7X8	1277 aa		4.03	□□□□□ -1.76
CLN3	YAL040C	TCB3	Q03640	1545 aa	Known RBP	4.02	□□□□□ -1.77
CLN3	YAL040C	MRF1	P30775	413 aa	Predicted RBP	4.02	□□□□□ -1.77
CLN3	YAL040C	NPL4	P33755	580 aa		4.01	□□□□□ -1.77
CLN3	YAL040C	CKB1	P43639	278 aa		4.01	□□□□□ -1.77
CLN3	YAL040C	TUM1	Q08686	304 aa	Known RBP	4.01	□□□□□ -1.77
CLN3	YAL040C	PRT1	P06103	763 aa	Known RBP	4.01	□□□□□ -1.77
CLN3	YAL040C	NUD1	P32336	851 aa		4.01	□□□□□ -1.77
CLN3	YAL040C	BUD20	Q08004	166 aa	Predicted RBP	4.01	□□□□□ -1.77
CLN3	YAL040C	STR2	P47164	639 aa		4	□□□□□ -1.77
CLN3	YAL040C	SDH2	P21801	266 aa		3.99	□□□□□ -1.77
CLN3	YAL040C	ISM1	P48526	1002 aa		3.99	□□□□□ -1.77
CLN3	YAL040C	TRK1	P12685	1235 aa		3.98	□□□□□ -1.77
CLN3	YAL040C	MVP1	P40959	511 aa	Known RBP	3.98	□□□□□ -1.77
CLN3	YAL040C	ERG12	P07277	443 aa		3.97	□□□□□ -1.77
CLN3	YAL040C	PBS2	P08018	668 aa		3.96	□□□□□ -1.78
CLN3	YAL040C	GCD11	P32481	527 aa	Known RBP	3.96	□□□□□ -1.78
CLN3	YAL040C	YPR109W	Q06104	294 aa		3.96	□□□□□ -1.78
CLN3	YAL040C	HSL1	P34244	1518 aa		3.95	□□□□□ -1.78
CLN3	YAL040C	SWR1	Q05471	1514 aa		3.95	□□□□□ -1.78
CLN3	YAL040C	RGR1	P19263	1082 aa		3.95	□□□□□ -1.78

Retrieved 100 of 5,963 RNA–protein pairs in 67.7 ms