RNA–Protein interactions for RNA: ENST00000641523.1

CASC19-238, Transcript of cancer susceptibility 19, human

BASIC

Gene CASC19, Length 1,558 nt, Biotype lincRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CASC19-238	ENST00000641523	REM2	Q8IYK8	340 aa	Predicted RBP	12.56	□□□□□ -0.4
CASC19-238	ENST00000641523	PRR29	P0C7W0	189 aa		12.55	□□□□□ -0.4
CASC19-238	ENST00000641523	GSE1	Q14687	1217 aa		12.54	□□□□□ -0.4
CASC19-238	ENST00000641523	CREBZF	Q9NS37	354 aa		12.54	□□□□□ -0.4
CASC19-238	ENST00000641523	DCAF8	Q5TAQ9	597 aa		12.52	□□□□□ -0.4
CASC19-238	ENST00000641523	SPRYD3	Q8NCJ5	442 aa		12.52	□□□□□ -0.41
CASC19-238	ENST00000641523	KDM2A	Q9Y2K7	1162 aa		12.51	□□□□□ -0.41
CASC19-238	ENST00000641523	RNF25	Q96BH1	459 aa	Predicted RBP	12.49	□□□□□ -0.41
CASC19-238	ENST00000641523	MNX1	P50219	401 aa	Predicted RBP	12.47	□□□□□ -0.41
CASC19-238	ENST00000641523	TSHZ2	Q9NRE2	1034 aa		12.45	□□□□□ -0.42
CASC19-238	ENST00000641523	HS6ST3	Q8IZP7	471 aa		12.43	□□□□□ -0.42
CASC19-238	ENST00000641523	BCAN	Q96GW7	911 aa		12.43	□□□□□ -0.42
CASC19-238	ENST00000641523	ZCCHC6	Q5VYS8	1495 aa	Known RBP	12.42	□□□□□ -0.42
CASC19-238	ENST00000641523	FAM212A	Q96EL1	285 aa		12.42	□□□□□ -0.42
CASC19-238	ENST00000641523	DCAF1	Q9Y4B6	1507 aa		12.41	□□□□□ -0.42
CASC19-238	ENST00000641523	PITPNM1	O00562	1244 aa		12.4	□□□□□ -0.42
CASC19-238	ENST00000641523	RASEF	Q8IZ41	740 aa		12.4	□□□□□ -0.42
CASC19-238	ENST00000641523	RIOK3	O14730	519 aa	Known RBP	12.39	□□□□□ -0.43
CASC19-238	ENST00000641523	DNAJC5	Q9H3Z4	198 aa		12.32	□□□□□ -0.44
CASC19-238	ENST00000641523	TAOK2	Q9UL54	1235 aa		12.32	□□□□□ -0.44
CASC19-238	ENST00000641523	CHRM1	P11229	460 aa	Predicted RBP	12.31	□□□□□ -0.44
CASC19-238	ENST00000641523	NKX1-1	Q15270	411 aa	Predicted RBP	12.31	□□□□□ -0.44
CASC19-238	ENST00000641523	UNC13A	Q9UPW8	1703 aa		12.31	□□□□□ -0.44
CASC19-238	ENST00000641523	STK25	O00506	426 aa		12.29	□□□□□ -0.44
CASC19-238	ENST00000641523	VGF	O15240	615 aa	Predicted RBP	12.29	□□□□□ -0.44
CASC19-238	ENST00000641523	SHROOM4	Q9ULL8	1493 aa		12.28	□□□□□ -0.44
CASC19-238	ENST00000641523	PYGB	P11216	843 aa		12.28	□□□□□ -0.44
CASC19-238	ENST00000641523	CHADL	Q6NUI6	762 aa		12.27	□□□□□ -0.44
CASC19-238	ENST00000641523	BICRA	Q9NZM4	1560 aa		12.27	□□□□□ -0.45
CASC19-238	ENST00000641523	PRKCSH	P14314	528 aa	Predicted RBP	12.26	□□□□□ -0.45
CASC19-238	ENST00000641523	GTPBP6	O43824	516 aa	Predicted RBP	12.23	□□□□□ -0.45
CASC19-238	ENST00000641523	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	12.22	□□□□□ -0.45
CASC19-238	ENST00000641523	ZFP91	Q96JP5	570 aa	Predicted RBP	12.22	□□□□□ -0.45
CASC19-238	ENST00000641523	STK24	Q9Y6E0	443 aa		12.21	□□□□□ -0.46
CASC19-238	ENST00000641523	SGIP1	Q9BQI5	828 aa		12.2	□□□□□ -0.46
CASC19-238	ENST00000641523	BCL11B	Q9C0K0	894 aa	Predicted RBP	12.2	□□□□□ -0.46
CASC19-238	ENST00000641523	TSPYL2	Q9H2G4	693 aa	Predicted RBP	12.19	□□□□□ -0.46
CASC19-238	ENST00000641523	FARP1	Q9Y4F1	1045 aa	Predicted RBP	12.16	□□□□□ -0.46
CASC19-238	ENST00000641523	SCRIB	Q14160	1630 aa		12.16	□□□□□ -0.46
CASC19-238	ENST00000641523	PRKAR2A	P13861	404 aa	Known RBP	12.1	□□□□□ -0.47
CASC19-238	ENST00000641523	TPRN	Q4KMQ1	711 aa		12.1	□□□□□ -0.47
CASC19-238	ENST00000641523	ZNF467	Q7Z7K2	595 aa	Predicted RBP	12.06	□□□□□ -0.48
CASC19-238	ENST00000641523	PCDHB8	Q9UN66	801 aa		12.06	□□□□□ -0.48
CASC19-238	ENST00000641523	PCDHB13	Q9Y5F0	798 aa		12.06	□□□□□ -0.48
CASC19-238	ENST00000641523	FXR2	P51116	673 aa	Known RBP eCLIP	12.03	□□□□□ -0.48
CASC19-238	ENST00000641523	NBR1	Q14596	966 aa		12.03	□□□□□ -0.48
CASC19-238	ENST00000641523	RYDEN	Q9NUL5	291 aa	Known RBP	12.03	□□□□□ -0.48
CASC19-238	ENST00000641523	CCDC61	Q9Y6R9	512 aa		12.02	□□□□□ -0.49
CASC19-238	ENST00000641523	PDAP1	Q13442	181 aa	Known RBP	12.01	□□□□□ -0.49
CASC19-238	ENST00000641523	EIF4G1	Q04637	1599 aa	Known RBP	12.01	□□□□□ -0.49
CASC19-238	ENST00000641523	CC2D2A	Q9P2K1	1620 aa		11.99	□□□□□ -0.49
CASC19-238	ENST00000641523	POTEH	Q6S545	545 aa		11.98	□□□□□ -0.49
CASC19-238	ENST00000641523	CECR2	Q9BXF3	1484 aa		11.98	□□□□□ -0.49
CASC19-238	ENST00000641523	PSEN1	P49768	467 aa		11.96	□□□□□ -0.49
CASC19-238	ENST00000641523	ZNF579	Q8NAF0	562 aa	Known RBP	11.96	□□□□□ -0.5
CASC19-238	ENST00000641523	CHRDL2	Q6WN34	429 aa		11.93	□□□□□ -0.5
CASC19-238	ENST00000641523	PIP4P2	Q8N4L2	257 aa		11.93	□□□□□ -0.5
CASC19-238	ENST00000641523	PAK3	O75914	559 aa	Predicted RBP	11.92	□□□□□ -0.5
CASC19-238	ENST00000641523	IFNL1	Q8IU54	200 aa		11.91	□□□□□ -0.5
CASC19-238	ENST00000641523	MAP3K13	O43283	966 aa		11.9	□□□□□ -0.5
CASC19-238	ENST00000641523	CADPS2	Q86UW7	1296 aa		11.9	□□□□□ -0.5
CASC19-238	ENST00000641523	MFRP	Q9BY79	579 aa		11.89	□□□□□ -0.51
CASC19-238	ENST00000641523	KIF12	Q96FN5	646 aa		11.88	□□□□□ -0.51
CASC19-238	ENST00000641523	EFCAB3	Q8N7B9	438 aa		11.84	□□□□□ -0.51
CASC19-238	ENST00000641523	CABP2	Q9NPB3	220 aa		11.83	□□□□□ -0.52
CASC19-238	ENST00000641523	ZRANB1	Q9UGI0	708 aa		11.82	□□□□□ -0.52
CASC19-238	ENST00000641523	PPP1R37	O75864	691 aa		11.81	□□□□□ -0.52
CASC19-238	ENST00000641523	WDR70	Q9NW82	654 aa		11.8	□□□□□ -0.52
CASC19-238	ENST00000641523	CD44	P16070	742 aa	Known RBP	11.78	□□□□□ -0.52
CASC19-238	ENST00000641523	FBXO22	Q8NEZ5	403 aa		11.78	□□□□□ -0.52
CASC19-238	ENST00000641523	PHF12	Q96QT6	1004 aa		11.78	□□□□□ -0.52
CASC19-238	ENST00000641523	PHF8	Q9UPP1	1060 aa		11.78	□□□□□ -0.52
CASC19-238	ENST00000641523	NLRP6	P59044	892 aa		11.77	□□□□□ -0.53
CASC19-238	ENST00000641523	P3H3	Q8IVL6	736 aa		11.77	□□□□□ -0.53
CASC19-238	ENST00000641523	SOX12	O15370	315 aa		11.75	□□□□□ -0.53
CASC19-238	ENST00000641523	KCNV2	Q8TDN2	545 aa		11.75	□□□□□ -0.53
CASC19-238	ENST00000641523	NCAPD3	P42695	1498 aa		11.69	□□□□□ -0.54
CASC19-238	ENST00000641523	TRPC6	Q9Y210	931 aa		11.67	□□□□□ -0.54
CASC19-238	ENST00000641523	SMARCA2	P51531	1590 aa		11.66	□□□□□ -0.54
CASC19-238	ENST00000641523	MS4A4A	Q96JQ5	239 aa		11.66	□□□□□ -0.54
CASC19-238	ENST00000641523	TMEM106C	Q9BVX2	250 aa		11.66	□□□□□ -0.54
CASC19-238	ENST00000641523	MS4A3	Q96HJ5	214 aa		11.64	□□□□□ -0.55
CASC19-238	ENST00000641523	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	11.64	□□□□□ -0.55
CASC19-238	ENST00000641523	ATAD2B	Q9ULI0	1458 aa		11.64	□□□□□ -0.55
CASC19-238	ENST00000641523	SMARCA4	P51532	1647 aa		11.63	□□□□□ -0.55
CASC19-238	ENST00000641523	GOLGA2	Q08379	1002 aa		11.62	□□□□□ -0.55
CASC19-238	ENST00000641523	HMGXB3	Q12766	1538 aa		11.61	□□□□□ -0.55
CASC19-238	ENST00000641523	C19orf67	A6NJJ6	358 aa		11.6	□□□□□ -0.55
CASC19-238	ENST00000641523	E2F4	Q16254	413 aa		11.6	□□□□□ -0.55
CASC19-238	ENST00000641523	NCKAP5L	Q9HCH0	1330 aa		11.6	□□□□□ -0.55
CASC19-238	ENST00000641523	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	11.59	□□□□□ -0.55
CASC19-238	ENST00000641523	ARHGEF1	Q92888	912 aa	Known RBP	11.58	□□□□□ -0.55
CASC19-238	ENST00000641523	LMOD2	Q6P5Q4	547 aa		11.58	□□□□□ -0.56
CASC19-238	ENST00000641523	LARP6	Q9BRS8	491 aa	Known RBP	11.58	□□□□□ -0.56
CASC19-238	ENST00000641523	MKRN3	Q13064	507 aa	Known RBP	11.57	□□□□□ -0.56
CASC19-238	ENST00000641523	PEG3	Q9GZU2	1588 aa		11.55	□□□□□ -0.56
CASC19-238	ENST00000641523	BAZ1B	Q9UIG0	1483 aa	Known RBP	11.55	□□□□□ -0.56
CASC19-238	ENST00000641523	PDE4A	P27815	886 aa		11.55	□□□□□ -0.56
CASC19-238	ENST00000641523	CRISPLD2	Q9H0B8	497 aa		11.52	□□□□□ -0.57
CASC19-238	ENST00000641523	TTLL13P	A6NNM8	815 aa		11.51	□□□□□ -0.57

Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms