RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 CADPSQ9ULU8 1353 aa9.72□□□□□ -0.85
SCN1A-213ENST00000636759 PKNOX2Q96KN3 472 aa9.72□□□□□ -0.85
SCN1A-213ENST00000636759 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.72□□□□□ -0.85
SCN1A-213ENST00000636759 DAXXQ9UER7 740 aaPredicted RBP9.71□□□□□ -0.85
SCN1A-213ENST00000636759 FANCIQ9NVI1 1328 aa9.7□□□□□ -0.86
SCN1A-213ENST00000636759 CUX2O14529 1486 aa9.69□□□□□ -0.86
SCN1A-213ENST00000636759 AEBP2Q6ZN18 517 aaPredicted RBP9.66□□□□□ -0.86
SCN1A-213ENST00000636759 LAMC3Q9Y6N6 1575 aa9.65□□□□□ -0.86
SCN1A-213ENST00000636759 RTN4Q9NQC3 1192 aaKnown RBP9.65□□□□□ -0.86
SCN1A-213ENST00000636759 RTL5Q5HYW3 569 aaPredicted RBP9.65□□□□□ -0.86
SCN1A-213ENST00000636759 ITGAEP38570 1179 aa9.64□□□□□ -0.87
SCN1A-213ENST00000636759 CDK11AQ9UQ88 783 aaPredicted RBP9.64□□□□□ -0.87
SCN1A-213ENST00000636759 NBR1Q14596 966 aa9.63□□□□□ -0.87
SCN1A-213ENST00000636759 DNMBPQ6XZF7 1577 aa9.63□□□□□ -0.87
SCN1A-213ENST00000636759 FANCD2Q9BXW9 1451 aa9.62□□□□□ -0.87
SCN1A-213ENST00000636759 PODXL2Q9NZ53 605 aa9.62□□□□□ -0.87
SCN1A-213ENST00000636759 KIF27Q86VH2 1401 aa9.62□□□□□ -0.87
SCN1A-213ENST00000636759 RRBP1Q9P2E9 1410 aaKnown RBP9.62□□□□□ -0.87
SCN1A-213ENST00000636759 WDR97A6NE52 1622 aa9.61□□□□□ -0.87
SCN1A-213ENST00000636759 FGD5Q6ZNL6 1462 aa9.6□□□□□ -0.87
SCN1A-213ENST00000636759 PLEKHG5O94827 1062 aa9.59□□□□□ -0.87
SCN1A-213ENST00000636759 IL27Q8NEV9 243 aa9.59□□□□□ -0.87
SCN1A-213ENST00000636759 CFAP43Q8NDM7 1665 aa9.58□□□□□ -0.88
SCN1A-213ENST00000636759 NESP48681 1621 aa9.58□□□□□ -0.88
SCN1A-213ENST00000636759 GLIPR1L2Q4G1C9 344 aa9.58□□□□□ -0.88
SCN1A-213ENST00000636759 DHX57Q6P158 1386 aaKnown RBP9.58□□□□□ -0.88
SCN1A-213ENST00000636759 ARHGAP35Q9NRY4 1499 aa9.57□□□□□ -0.88
SCN1A-213ENST00000636759 TOPBP1Q92547 1522 aa9.57□□□□□ -0.88
SCN1A-213ENST00000636759 UBTFP17480 764 aaKnown RBP9.57□□□□□ -0.88
SCN1A-213ENST00000636759 MAP3K1Q13233 1512 aa9.56□□□□□ -0.88
SCN1A-213ENST00000636759 ABCA10Q8WWZ4 1543 aa9.56□□□□□ -0.88
SCN1A-213ENST00000636759 MAPKBP1O60336 1514 aa9.56□□□□□ -0.88
SCN1A-213ENST00000636759 KIF21AQ7Z4S6 1674 aa9.55□□□□□ -0.88
SCN1A-213ENST00000636759 IGF1RP08069 1367 aa9.55□□□□□ -0.88
SCN1A-213ENST00000636759 POLA1P09884 1462 aaPredicted RBP9.54□□□□□ -0.88
SCN1A-213ENST00000636759 URB2Q14146 1524 aaKnown RBP9.54□□□□□ -0.88
SCN1A-213ENST00000636759 NOP58Q9Y2X3 529 aaKnown RBP9.54□□□□□ -0.88
SCN1A-213ENST00000636759 LRRIQ1Q96JM4 1722 aa9.53□□□□□ -0.88
SCN1A-213ENST00000636759 TIAM1Q13009 1591 aa9.53□□□□□ -0.88
SCN1A-213ENST00000636759 CUL7Q14999 1698 aa9.52□□□□□ -0.89
SCN1A-213ENST00000636759 ABCA5Q8WWZ7 1642 aa9.52□□□□□ -0.89
SCN1A-213ENST00000636759 KANK4Q5T7N3 995 aaPredicted RBP9.49□□□□□ -0.89
SCN1A-213ENST00000636759 RAD54L2Q9Y4B4 1467 aa9.49□□□□□ -0.89
SCN1A-213ENST00000636759 TARBP1Q13395 1621 aaKnown RBP9.48□□□□□ -0.89
SCN1A-213ENST00000636759 PDS5BQ9NTI5 1447 aa9.48□□□□□ -0.89
SCN1A-213ENST00000636759 DNAJC5BQ9UF47 199 aa9.48□□□□□ -0.89
SCN1A-213ENST00000636759 CTTNBP2Q8WZ74 1663 aa9.47□□□□□ -0.89
SCN1A-213ENST00000636759 CARMIL1Q5VZK9 1371 aa9.46□□□□□ -0.89
SCN1A-213ENST00000636759 PCF11O94913 1555 aaKnown RBP9.46□□□□□ -0.9
SCN1A-213ENST00000636759 HNRNPUL2Q1KMD3 747 aaKnown RBP9.44□□□□□ -0.9
SCN1A-213ENST00000636759 VSIG10Q8N0Z9 540 aa9.42□□□□□ -0.9
SCN1A-213ENST00000636759 RSPH6AQ9H0K4 717 aa9.42□□□□□ -0.9
SCN1A-213ENST00000636759 PBRM1Q86U86 1689 aa9.42□□□□□ -0.9
SCN1A-213ENST00000636759 LRRC9Q6ZRR7 1453 aa9.41□□□□□ -0.9
SCN1A-213ENST00000636759 ANP32AP39687 249 aaKnown RBP9.41□□□□□ -0.9
SCN1A-213ENST00000636759 KCNH8Q96L42 1107 aa9.41□□□□□ -0.9
SCN1A-213ENST00000636759 TIMELESSQ9UNS1 1208 aa9.41□□□□□ -0.9
SCN1A-213ENST00000636759 ZBTB47Q9UFB7 747 aaPredicted RBP9.4□□□□□ -0.9
SCN1A-213ENST00000636759 KDM5BQ9UGL1 1544 aa9.4□□□□□ -0.9
SCN1A-213ENST00000636759 EFCAB5A4FU69 1503 aa9.4□□□□□ -0.9
SCN1A-213ENST00000636759 ZMYND15Q9H091 742 aa9.4□□□□□ -0.9
SCN1A-213ENST00000636759 CCNB3Q8WWL7 1395 aa9.4□□□□□ -0.91
SCN1A-213ENST00000636759 WDR62O43379 1518 aa9.4□□□□□ -0.91
SCN1A-213ENST00000636759 SAMD9Q5K651 1589 aa9.39□□□□□ -0.91
SCN1A-213ENST00000636759 PAK3O75914 559 aaPredicted RBP9.39□□□□□ -0.91
SCN1A-213ENST00000636759 MRC2Q9UBG0 1479 aa9.39□□□□□ -0.91
SCN1A-213ENST00000636759 TRIM52Q96A61 297 aa9.38□□□□□ -0.91
SCN1A-213ENST00000636759 GAPVD1Q14C86 1478 aa9.38□□□□□ -0.91
SCN1A-213ENST00000636759 AQRO60306 1485 aaKnown RBP eCLIP9.37□□□□□ -0.91
SCN1A-213ENST00000636759 SNAPC4Q5SXM2 1469 aa9.37□□□□□ -0.91
SCN1A-213ENST00000636759 PHLDB1Q86UU1 1377 aa9.36□□□□□ -0.91
SCN1A-213ENST00000636759 C11orf95C9JLR9 678 aaPredicted RBP9.35□□□□□ -0.91
SCN1A-213ENST00000636759 NEFMP07197 916 aa9.35□□□□□ -0.91
SCN1A-213ENST00000636759 IRX6P78412 446 aaPredicted RBP9.35□□□□□ -0.91
SCN1A-213ENST00000636759 RAB3GAP2Q9H2M9 1393 aa9.34□□□□□ -0.91
SCN1A-213ENST00000636759 ADAMTS12P58397 1594 aa9.34□□□□□ -0.91
SCN1A-213ENST00000636759 THOC2Q8NI27 1593 aaKnown RBP9.34□□□□□ -0.91
SCN1A-213ENST00000636759 FYCO1Q9BQS8 1478 aa9.34□□□□□ -0.91
SCN1A-213ENST00000636759 ARHGEF11O15085 1522 aa9.34□□□□□ -0.91
SCN1A-213ENST00000636759 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.33□□□□□ -0.92
SCN1A-213ENST00000636759 IPO9Q96P70 1041 aaKnown RBP9.33□□□□□ -0.92
SCN1A-213ENST00000636759 PPP4R2Q9NY27 417 aa9.32□□□□□ -0.92
SCN1A-213ENST00000636759 FHAD1B1AJZ9 1412 aa9.32□□□□□ -0.92
SCN1A-213ENST00000636759 TDRD9Q8NDG6 1382 aaKnown RBP9.32□□□□□ -0.92
SCN1A-213ENST00000636759 USP35Q9P2H5 1018 aa9.32□□□□□ -0.92
SCN1A-213ENST00000636759 BRPF3Q9ULD4 1205 aa9.31□□□□□ -0.92
SCN1A-213ENST00000636759 IFT140Q96RY7 1462 aa9.31□□□□□ -0.92
SCN1A-213ENST00000636759 GCC2Q8IWJ2 1684 aa9.3□□□□□ -0.92
SCN1A-213ENST00000636759 DENND4BO75064 1496 aaPredicted RBP9.3□□□□□ -0.92
SCN1A-213ENST00000636759 A0A0U1RQG5 324 aaPredicted RBP9.3□□□□□ -0.92
SCN1A-213ENST00000636759 RANGAP1P46060 587 aaPredicted RBP9.3□□□□□ -0.92
SCN1A-213ENST00000636759 CASKIN1Q8WXD9 1431 aa9.3□□□□□ -0.92
SCN1A-213ENST00000636759 PTPN23Q9H3S7 1636 aa9.29□□□□□ -0.92
SCN1A-213ENST00000636759 SETD5Q9C0A6 1442 aa9.29□□□□□ -0.92
SCN1A-213ENST00000636759 WASHC2AQ641Q2 1341 aa9.29□□□□□ -0.92
SCN1A-213ENST00000636759 GRIN2BQ13224 1484 aa9.28□□□□□ -0.92
SCN1A-213ENST00000636759 MAGI3Q5TCQ9 1506 aa9.27□□□□□ -0.92
SCN1A-213ENST00000636759 PTPRKQ15262 1439 aa9.27□□□□□ -0.92
SCN1A-213ENST00000636759 EIF4G3O43432 1585 aaKnown RBP9.27□□□□□ -0.93
SCN1A-213ENST00000636759 ANP32CO43423 234 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms