RNA–Protein interactions for RNA: ENST00000636674.1

CLN6-215, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 2,005 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-215ENST00000636674 CCNB3Q8WWL7 1395 aa21.36■■□□□ 1.01
CLN6-215ENST00000636674 TOPBP1Q92547 1522 aa21.35■■□□□ 1.01
CLN6-215ENST00000636674 TIAM1Q13009 1591 aa21.34■■□□□ 1.01
CLN6-215ENST00000636674 DNMBPQ6XZF7 1577 aa21.34■■□□□ 1.01
CLN6-215ENST00000636674 IGF1RP08069 1367 aa21.31■■□□□ 1
CLN6-215ENST00000636674 YTHDC1Q96MU7 727 aaKnown RBP21.31■■□□□ 1
CLN6-215ENST00000636674 CFAP43Q8NDM7 1665 aa21.26■□□□□ 0.99
CLN6-215ENST00000636674 FGD5Q6ZNL6 1462 aa21.25■□□□□ 0.99
CLN6-215ENST00000636674 IFT140Q96RY7 1462 aa21.22■□□□□ 0.99
CLN6-215ENST00000636674 CARMIL1Q5VZK9 1371 aa21.22■□□□□ 0.99
CLN6-215ENST00000636674 LRRC9Q6ZRR7 1453 aa21.2■□□□□ 0.98
CLN6-215ENST00000636674 MAPKBP1O60336 1514 aa21.19■□□□□ 0.98
CLN6-215ENST00000636674 FHAD1B1AJZ9 1412 aa21.18■□□□□ 0.98
CLN6-215ENST00000636674 POLA1P09884 1462 aaPredicted RBP21.16■□□□□ 0.98
CLN6-215ENST00000636674 RAB3GAP2Q9H2M9 1393 aa21.15■□□□□ 0.98
CLN6-215ENST00000636674 TARBP1Q13395 1621 aaKnown RBP21.14■□□□□ 0.97
CLN6-215ENST00000636674 PCF11O94913 1555 aaKnown RBP21.14■□□□□ 0.97
CLN6-215ENST00000636674 EFCAB5A4FU69 1503 aa21.11■□□□□ 0.97
CLN6-215ENST00000636674 SETD5Q9C0A6 1442 aa21.1■□□□□ 0.97
CLN6-215ENST00000636674 ZNF608Q9ULD9 1512 aaPredicted RBP21.1■□□□□ 0.97
CLN6-215ENST00000636674 ABCA10Q8WWZ4 1543 aa21.09■□□□□ 0.97
CLN6-215ENST00000636674 CUL7Q14999 1698 aa21.08■□□□□ 0.97
CLN6-215ENST00000636674 PHLDB1Q86UU1 1377 aa21.08■□□□□ 0.96
CLN6-215ENST00000636674 AQRO60306 1485 aaKnown RBP eCLIP21.07■□□□□ 0.963e-7■■■■■ 36.6
CLN6-215ENST00000636674 FYCO1Q9BQS8 1478 aa21.07■□□□□ 0.96
CLN6-215ENST00000636674 DNAJC5Q9H3Z4 198 aa21.07■□□□□ 0.96
CLN6-215ENST00000636674 EIF4G3O43432 1585 aaKnown RBP21.07■□□□□ 0.96
CLN6-215ENST00000636674 CTTNBP2Q8WZ74 1663 aa21.05■□□□□ 0.96
CLN6-215ENST00000636674 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.04■□□□□ 0.96
CLN6-215ENST00000636674 RAD54L2Q9Y4B4 1467 aa21.04■□□□□ 0.96
CLN6-215ENST00000636674 MYT1Q01538 1121 aa21.03■□□□□ 0.96
CLN6-215ENST00000636674 WDR97A6NE52 1622 aa21.02■□□□□ 0.95
CLN6-215ENST00000636674 CASKIN1Q8WXD9 1431 aa21.01■□□□□ 0.95
CLN6-215ENST00000636674 ITGAEP38570 1179 aa20.98■□□□□ 0.95
CLN6-215ENST00000636674 TIMELESSQ9UNS1 1208 aa20.95■□□□□ 0.94
CLN6-215ENST00000636674 FHOD3Q2V2M9 1422 aa20.94■□□□□ 0.94
CLN6-215ENST00000636674 TDRD9Q8NDG6 1382 aaKnown RBP20.9■□□□□ 0.94
CLN6-215ENST00000636674 FMN1Q68DA7 1419 aa20.9■□□□□ 0.94
CLN6-215ENST00000636674 SNAPC4Q5SXM2 1469 aa20.9■□□□□ 0.94
CLN6-215ENST00000636674 SAMD9Q5K651 1589 aa20.88■□□□□ 0.93
CLN6-215ENST00000636674 SUPT16HQ9Y5B9 1047 aaKnown RBP20.87■□□□□ 0.93
CLN6-215ENST00000636674 ABCA5Q8WWZ7 1642 aa20.86■□□□□ 0.93
CLN6-215ENST00000636674 FAM50AQ14320 339 aaKnown RBP20.86■□□□□ 0.93
CLN6-215ENST00000636674 FGD6Q6ZV73 1430 aa20.84■□□□□ 0.93
CLN6-215ENST00000636674 PBRM1Q86U86 1689 aa20.84■□□□□ 0.93
CLN6-215ENST00000636674 GRIN2BQ13224 1484 aa20.83■□□□□ 0.92
CLN6-215ENST00000636674 CHD1O14646 1710 aa20.82■□□□□ 0.92
CLN6-215ENST00000636674 GAPVD1Q14C86 1478 aa20.82■□□□□ 0.92
CLN6-215ENST00000636674 LRRIQ1Q96JM4 1722 aa20.81■□□□□ 0.92
CLN6-215ENST00000636674 P3H3Q8IVL6 736 aa20.8■□□□□ 0.92
CLN6-215ENST00000636674 OSCARQ8IYS5 282 aa20.8■□□□□ 0.92
CLN6-215ENST00000636674 MAGI1Q96QZ7 1491 aaPredicted RBP20.79■□□□□ 0.92
CLN6-215ENST00000636674 SIN3AQ96ST3 1273 aa20.78■□□□□ 0.92
CLN6-215ENST00000636674 HFM1A2PYH4 1435 aa20.78■□□□□ 0.92
CLN6-215ENST00000636674 PTPN23Q9H3S7 1636 aa20.77■□□□□ 0.92
CLN6-215ENST00000636674 CCDC18Q5T9S5 1454 aa20.76■□□□□ 0.91
CLN6-215ENST00000636674 UACAQ9BZF9 1416 aa20.74■□□□□ 0.91
CLN6-215ENST00000636674 SUPT6HQ7KZ85 1726 aaKnown RBP20.74■□□□□ 0.91
CLN6-215ENST00000636674 EHBP1L1Q8N3D4 1523 aa20.74■□□□□ 0.91
CLN6-215ENST00000636674 PPP1R15AO75807 674 aaPredicted RBP20.74■□□□□ 0.91
CLN6-215ENST00000636674 MYOM3Q5VTT5 1437 aa20.71■□□□□ 0.91
CLN6-215ENST00000636674 MTUS2Q5JR59 1369 aa20.71■□□□□ 0.91
CLN6-215ENST00000636674 ARHGEF11O15085 1522 aa20.7■□□□□ 0.9
CLN6-215ENST00000636674 ATP1B4Q9UN42 357 aaPredicted RBP20.7■□□□□ 0.9
CLN6-215ENST00000636674 SYNJ2O15056 1496 aa20.7■□□□□ 0.9
CLN6-215ENST00000636674 NCOA2Q15596 1464 aa20.7■□□□□ 0.9
CLN6-215ENST00000636674 PTPRKQ15262 1439 aa20.69■□□□□ 0.9
CLN6-215ENST00000636674 KCNH8Q96L42 1107 aa20.68■□□□□ 0.9
CLN6-215ENST00000636674 UGGT2Q9NYU1 1516 aa20.67■□□□□ 0.9
CLN6-215ENST00000636674 CCER2I3L3R5 266 aa20.66■□□□□ 0.9
CLN6-215ENST00000636674 DDX10Q13206 875 aaKnown RBP20.66■□□□□ 0.9
CLN6-215ENST00000636674 NAIPQ13075 1403 aa20.66■□□□□ 0.9
CLN6-215ENST00000636674 FBLN2P98095 1184 aa20.66■□□□□ 0.9
CLN6-215ENST00000636674 ADAMTS12P58397 1594 aa20.66■□□□□ 0.9
CLN6-215ENST00000636674 GCC2Q8IWJ2 1684 aa20.64■□□□□ 0.9
CLN6-215ENST00000636674 TONSLQ96HA7 1378 aa20.63■□□□□ 0.89
CLN6-215ENST00000636674 CHMP7Q8WUX9 453 aaPredicted RBP20.63■□□□□ 0.89
CLN6-215ENST00000636674 TCOF1Q13428 1488 aaKnown RBP20.62■□□□□ 0.89
CLN6-215ENST00000636674 KDM5BQ9UGL1 1544 aa20.62■□□□□ 0.89
CLN6-215ENST00000636674 HECW1Q76N89 1606 aa20.61■□□□□ 0.89
CLN6-215ENST00000636674 AKNAQ7Z591 1439 aa20.6■□□□□ 0.89
CLN6-215ENST00000636674 MAGI3Q5TCQ9 1506 aa20.58■□□□□ 0.88
CLN6-215ENST00000636674 CLASP1Q7Z460 1538 aa20.58■□□□□ 0.88
CLN6-215ENST00000636674 GRIN2AQ12879 1464 aa20.56■□□□□ 0.88
CLN6-215ENST00000636674 TSHZ2Q9NRE2 1034 aa20.54■□□□□ 0.88
CLN6-215ENST00000636674 RIMBP3CA6NJZ7 1639 aa20.54■□□□□ 0.88
CLN6-215ENST00000636674 RIMBP3BA6NNM3 1639 aa20.54■□□□□ 0.88
CLN6-215ENST00000636674 RIMBP3Q9UFD9 1639 aa20.54■□□□□ 0.88
CLN6-215ENST00000636674 ANP32CO43423 234 aa20.54■□□□□ 0.88
CLN6-215ENST00000636674 IQGAP2Q13576 1575 aa20.51■□□□□ 0.87
CLN6-215ENST00000636674 NUP160Q12769 1436 aa20.48■□□□□ 0.87
CLN6-215ENST00000636674 MIA2Q96PC5 1412 aa20.48■□□□□ 0.87
CLN6-215ENST00000636674 DENND4BO75064 1496 aaPredicted RBP20.47■□□□□ 0.87
CLN6-215ENST00000636674 EPRSP07814 1512 aaKnown RBP20.47■□□□□ 0.87
CLN6-215ENST00000636674 CEP170Q5SW79 1584 aa20.47■□□□□ 0.87
CLN6-215ENST00000636674 HIRIP3Q9BW71 556 aaPredicted RBP20.45■□□□□ 0.86
CLN6-215ENST00000636674 FKBP8Q14318 412 aa20.42■□□□□ 0.86
CLN6-215ENST00000636674 KDM6BO15054 1643 aa20.41■□□□□ 0.86
CLN6-215ENST00000636674 NEFLP07196 543 aa20.38■□□□□ 0.85
CLN6-215ENST00000636674 CDK13Q14004 1512 aaKnown RBP20.37■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms