RNA–Protein interactions for RNA: ENST00000626236.2

SGMS1-211, Transcript of sphingomyelin synthase 1, humanhuman

TSL 1 (best)

Gene SGMS1, Length 1,013 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGMS1-211ENST00000626236 CHMP7Q8WUX9 453 aaPredicted RBP14.02□□□□□ -0.17
SGMS1-211ENST00000626236 GRIN2AQ12879 1464 aa14.01□□□□□ -0.17
SGMS1-211ENST00000626236 RAPGEF2Q9Y4G8 1499 aa14.01□□□□□ -0.17
SGMS1-211ENST00000626236 EHMT2Q96KQ7 1210 aa13.97□□□□□ -0.17
SGMS1-211ENST00000626236 PPP4R3CPQ6ZMV5 832 aa13.96□□□□□ -0.17
SGMS1-211ENST00000626236 CEP170Q5SW79 1584 aa13.96□□□□□ -0.18
SGMS1-211ENST00000626236 CTTNBP2Q8WZ74 1663 aa13.95□□□□□ -0.18
SGMS1-211ENST00000626236 GOLGA3Q08378 1498 aa13.95□□□□□ -0.18
SGMS1-211ENST00000626236 POTEDQ86YR6 584 aa13.92□□□□□ -0.18
SGMS1-211ENST00000626236 NUP160Q12769 1436 aa13.91□□□□□ -0.18
SGMS1-211ENST00000626236 OSCARQ8IYS5 282 aa13.89□□□□□ -0.19
SGMS1-211ENST00000626236 CLASP1Q7Z460 1538 aa13.88□□□□□ -0.19
SGMS1-211ENST00000626236 UBTFP17480 764 aaKnown RBP13.87□□□□□ -0.19
SGMS1-211ENST00000626236 IQGAP2Q13576 1575 aa13.87□□□□□ -0.19
SGMS1-211ENST00000626236 MAPK8IP2Q13387 824 aaPredicted RBP13.86□□□□□ -0.19
SGMS1-211ENST00000626236 KIAA0586Q9BVV6 1533 aa13.85□□□□□ -0.19
SGMS1-211ENST00000626236 LOC105371045A0A1W2PR82 267 aa13.85□□□□□ -0.19
SGMS1-211ENST00000626236 SHROOM2Q13796 1616 aa13.82□□□□□ -0.2
SGMS1-211ENST00000626236 TNIKQ9UKE5 1360 aa13.79□□□□□ -0.2
SGMS1-211ENST00000626236 RANGAP1P46060 587 aaPredicted RBP13.78□□□□□ -0.2
SGMS1-211ENST00000626236 SCAF1Q9H7N4 1312 aaKnown RBP13.77□□□□□ -0.21
SGMS1-211ENST00000626236 UGGT2Q9NYU1 1516 aa13.77□□□□□ -0.21
SGMS1-211ENST00000626236 JPH4Q96JJ6 628 aa13.76□□□□□ -0.21
SGMS1-211ENST00000626236 PRG4Q92954 1404 aaPredicted RBP13.74□□□□□ -0.21
SGMS1-211ENST00000626236 KIAA0556O60303 1618 aa13.74□□□□□ -0.21
SGMS1-211ENST00000626236 SAMD9Q5K651 1589 aa13.74□□□□□ -0.21
SGMS1-211ENST00000626236 ERCC6L2Q5T890 1561 aa13.74□□□□□ -0.21
SGMS1-211ENST00000626236 EFCAB5A4FU69 1503 aa13.72□□□□□ -0.21
SGMS1-211ENST00000626236 DISP1Q96F81 1524 aa13.72□□□□□ -0.21
SGMS1-211ENST00000626236 CEP162Q5TB80 1403 aa13.71□□□□□ -0.22
SGMS1-211ENST00000626236 CARMIL2Q6F5E8 1435 aa13.71□□□□□ -0.22
SGMS1-211ENST00000626236 RIMBP3CA6NJZ7 1639 aa13.71□□□□□ -0.22
SGMS1-211ENST00000626236 RIMBP3BA6NNM3 1639 aa13.71□□□□□ -0.22
SGMS1-211ENST00000626236 RIMBP3Q9UFD9 1639 aa13.71□□□□□ -0.22
SGMS1-211ENST00000626236 ARHGEF11O15085 1522 aa13.7□□□□□ -0.22
SGMS1-211ENST00000626236 CLIP1P30622 1438 aa13.7□□□□□ -0.22
SGMS1-211ENST00000626236 ARHGAP35Q9NRY4 1499 aa13.68□□□□□ -0.22
SGMS1-211ENST00000626236 P3H3Q8IVL6 736 aa13.67□□□□□ -0.22
SGMS1-211ENST00000626236 FHOD3Q2V2M9 1422 aa13.65□□□□□ -0.22
SGMS1-211ENST00000626236 TTBK1Q5TCY1 1321 aaPredicted RBP13.64□□□□□ -0.23
SGMS1-211ENST00000626236 KCNA4P22459 653 aa13.63□□□□□ -0.23
SGMS1-211ENST00000626236 ARAP1Q96P48 1450 aa13.62□□□□□ -0.23
SGMS1-211ENST00000626236 DNAJC5Q9H3Z4 198 aa13.62□□□□□ -0.23
SGMS1-211ENST00000626236 PTPRGP23470 1445 aa13.6□□□□□ -0.23
SGMS1-211ENST00000626236 FMN1Q68DA7 1419 aa13.56□□□□□ -0.24
SGMS1-211ENST00000626236 RAPGEF6Q8TEU7 1601 aa13.56□□□□□ -0.24
SGMS1-211ENST00000626236 PCF11O94913 1555 aaKnown RBP13.55□□□□□ -0.24
SGMS1-211ENST00000626236 PLB1Q6P1J6 1458 aa13.55□□□□□ -0.24
SGMS1-211ENST00000626236 ABCA8O94911 1581 aa13.54□□□□□ -0.24
SGMS1-211ENST00000626236 ADCY10Q96PN6 1610 aa13.53□□□□□ -0.24
SGMS1-211ENST00000626236 CYB5RLQ6IPT4 315 aa13.53□□□□□ -0.24
SGMS1-211ENST00000626236 UACAQ9BZF9 1416 aa13.53□□□□□ -0.24
SGMS1-211ENST00000626236 CNKSR2Q8WXI2 1034 aa13.52□□□□□ -0.25
SGMS1-211ENST00000626236 DMRT2Q9Y5R5 561 aa13.52□□□□□ -0.25
SGMS1-211ENST00000626236 VPS8Q8N3P4 1428 aa13.52□□□□□ -0.25
SGMS1-211ENST00000626236 ABCC2Q92887 1545 aa13.52□□□□□ -0.25
SGMS1-211ENST00000626236 HECW1Q76N89 1606 aa13.52□□□□□ -0.25
SGMS1-211ENST00000626236 LRRIQ1Q96JM4 1722 aa13.51□□□□□ -0.25
SGMS1-211ENST00000626236 UHRF1BP1LA0JNW5 1464 aa13.49□□□□□ -0.25
SGMS1-211ENST00000626236 FYCO1Q9BQS8 1478 aa13.49□□□□□ -0.25
SGMS1-211ENST00000626236 CASKIN1Q8WXD9 1431 aa13.49□□□□□ -0.25
SGMS1-211ENST00000626236 NCBP3Q53F19 620 aaKnown RBP13.49□□□□□ -0.25
SGMS1-211ENST00000626236 ATP1B4Q9UN42 357 aaPredicted RBP13.49□□□□□ -0.25
SGMS1-211ENST00000626236 ZCCHC11Q5TAX3 1644 aaKnown RBP13.47□□□□□ -0.25
SGMS1-211ENST00000626236 NUP153P49790 1475 aaKnown RBP13.47□□□□□ -0.25
SGMS1-211ENST00000626236 ARID3CA6NKF2 412 aa13.46□□□□□ -0.25
SGMS1-211ENST00000626236 EPRSP07814 1512 aaKnown RBP13.44□□□□□ -0.26
SGMS1-211ENST00000626236 CDK13Q14004 1512 aaKnown RBP13.44□□□□□ -0.26
SGMS1-211ENST00000626236 CFAP43Q8NDM7 1665 aa13.43□□□□□ -0.26
SGMS1-211ENST00000626236 KDM5BQ9UGL1 1544 aa13.43□□□□□ -0.26
SGMS1-211ENST00000626236 CCDC18Q5T9S5 1454 aa13.42□□□□□ -0.26
SGMS1-211ENST00000626236 ATP10BO94823 1461 aa13.42□□□□□ -0.26
SGMS1-211ENST00000626236 NPM1P06748 294 aaKnown RBP eCLIP13.41□□□□□ -0.26
SGMS1-211ENST00000626236 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.4□□□□□ -0.26
SGMS1-211ENST00000626236 HNRNPUL2Q1KMD3 747 aaKnown RBP13.4□□□□□ -0.26
SGMS1-211ENST00000626236 TIAM1Q13009 1591 aa13.4□□□□□ -0.26
SGMS1-211ENST00000626236 NPM3O75607 178 aaKnown RBP13.39□□□□□ -0.27
SGMS1-211ENST00000626236 APLP2Q06481 763 aa13.37□□□□□ -0.27
SGMS1-211ENST00000626236 MAPKBP1O60336 1514 aa13.36□□□□□ -0.27
SGMS1-211ENST00000626236 MAP3K1Q13233 1512 aa13.35□□□□□ -0.27
SGMS1-211ENST00000626236 MAGI3Q5TCQ9 1506 aa13.34□□□□□ -0.27
SGMS1-211ENST00000626236 ASXL2Q76L83 1435 aa13.34□□□□□ -0.27
SGMS1-211ENST00000626236 WDR7Q9Y4E6 1490 aa13.32□□□□□ -0.28
SGMS1-211ENST00000626236 CDK11AQ9UQ88 783 aaPredicted RBP13.32□□□□□ -0.28
SGMS1-211ENST00000626236 EHBP1L1Q8N3D4 1523 aa13.32□□□□□ -0.28
SGMS1-211ENST00000626236 PLEKHD1A6NEE1 506 aa13.31□□□□□ -0.28
SGMS1-211ENST00000626236 LRRC9Q6ZRR7 1453 aa13.3□□□□□ -0.28
SGMS1-211ENST00000626236 KIF14Q15058 1648 aa13.3□□□□□ -0.28
SGMS1-211ENST00000626236 MTUS2Q5JR59 1369 aa13.3□□□□□ -0.28
SGMS1-211ENST00000626236 TROQ12816 1431 aaPredicted RBP13.3□□□□□ -0.28
SGMS1-211ENST00000626236 SUPT6HQ7KZ85 1726 aaKnown RBP13.29□□□□□ -0.28
SGMS1-211ENST00000626236 KANK4Q5T7N3 995 aaPredicted RBP13.28□□□□□ -0.28
SGMS1-211ENST00000626236 KCNH8Q96L42 1107 aa13.28□□□□□ -0.28
SGMS1-211ENST00000626236 KIF13AQ9H1H9 1805 aa13.27□□□□□ -0.28
SGMS1-211ENST00000626236 DIP2BQ9P265 1576 aa13.27□□□□□ -0.29
SGMS1-211ENST00000626236 PPARGC1BQ86YN6 1023 aaKnown RBP13.26□□□□□ -0.29
SGMS1-211ENST00000626236 TTC37Q6PGP7 1564 aa13.25□□□□□ -0.29
SGMS1-211ENST00000626236 RNF216Q9NWF9 866 aaPredicted RBP13.25□□□□□ -0.29
SGMS1-211ENST00000626236 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.24□□□□□ -0.29
SGMS1-211ENST00000626236 ABCC10Q5T3U5 1492 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms