RNA–Protein interactions for RNA: ENST00000611659.4

TPM3-223, Transcript of tropomyosin 3, humanhuman

TSL 3 BASIC

Gene TPM3, Length 3,149 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-223ENST00000611659 PPP1R15AO75807 674 aaPredicted RBP16.83■□□□□ 0.29
TPM3-223ENST00000611659 SETD5Q9C0A6 1442 aa16.82■□□□□ 0.28
TPM3-223ENST00000611659 ARHGAP35Q9NRY4 1499 aa16.81■□□□□ 0.28
TPM3-223ENST00000611659 ATP1B4Q9UN42 357 aaPredicted RBP16.81■□□□□ 0.28
TPM3-223ENST00000611659 KIF27Q86VH2 1401 aa16.8■□□□□ 0.28
TPM3-223ENST00000611659 CCER2I3L3R5 266 aa16.77■□□□□ 0.27
TPM3-223ENST00000611659 IRX6P78412 446 aaPredicted RBP16.76■□□□□ 0.27
TPM3-223ENST00000611659 BIVM-ERCC5R4GMW8 1640 aa16.76■□□□□ 0.27
TPM3-223ENST00000611659 MSH5O43196 834 aa16.75■□□□□ 0.27
TPM3-223ENST00000611659 ERICH6Q7L0X2 663 aa16.74■□□□□ 0.27
TPM3-223ENST00000611659 PHLDB1Q86UU1 1377 aa16.72■□□□□ 0.27
TPM3-223ENST00000611659 P3H3Q8IVL6 736 aa16.71■□□□□ 0.27
TPM3-223ENST00000611659 CUX1P39880 1505 aa16.7■□□□□ 0.26
TPM3-223ENST00000611659 HNRNPUQ00839 825 aaKnown RBP eCLIP16.7■□□□□ 0.26
TPM3-223ENST00000611659 CDK11AQ9UQ88 783 aaPredicted RBP16.69■□□□□ 0.26
TPM3-223ENST00000611659 TIMELESSQ9UNS1 1208 aa16.67■□□□□ 0.26
TPM3-223ENST00000611659 TIAM1Q13009 1591 aa16.67■□□□□ 0.26
TPM3-223ENST00000611659 LRRC9Q6ZRR7 1453 aa16.66■□□□□ 0.26
TPM3-223ENST00000611659 TONSLQ96HA7 1378 aa16.65■□□□□ 0.26
TPM3-223ENST00000611659 FANCIQ9NVI1 1328 aa16.6■□□□□ 0.25
TPM3-223ENST00000611659 IGF1RP08069 1367 aa16.58■□□□□ 0.25
TPM3-223ENST00000611659 MAP3K1Q13233 1512 aa16.56■□□□□ 0.24
TPM3-223ENST00000611659 CARMIL1Q5VZK9 1371 aa16.56■□□□□ 0.24
TPM3-223ENST00000611659 NCAPD3P42695 1498 aa16.54■□□□□ 0.24
TPM3-223ENST00000611659 FHAD1B1AJZ9 1412 aa16.53■□□□□ 0.24
TPM3-223ENST00000611659 B4GALNT3Q6L9W6 998 aa16.49■□□□□ 0.23
TPM3-223ENST00000611659 PPP4R2Q9NY27 417 aa16.48■□□□□ 0.23
TPM3-223ENST00000611659 CFTRP13569 1480 aa16.48■□□□□ 0.23
TPM3-223ENST00000611659 FHOD3Q2V2M9 1422 aa16.48■□□□□ 0.23
TPM3-223ENST00000611659 PCF11O94913 1555 aaKnown RBP16.47■□□□□ 0.23
TPM3-223ENST00000611659 FAM9BQ8IZU0 186 aa16.47■□□□□ 0.23
TPM3-223ENST00000611659 CCDC18Q5T9S5 1454 aa16.46■□□□□ 0.23
TPM3-223ENST00000611659 CCDC184Q52MB2 194 aa16.45■□□□□ 0.22
TPM3-223ENST00000611659 HSPA5P11021 654 aaKnown RBP16.45■□□□□ 0.22
TPM3-223ENST00000611659 WASHC2AQ641Q2 1341 aa16.44■□□□□ 0.22
TPM3-223ENST00000611659 DEKP35659 375 aaKnown RBP16.43■□□□□ 0.22
TPM3-223ENST00000611659 HMGXB3Q12766 1538 aa16.41■□□□□ 0.22
TPM3-223ENST00000611659 NBR1Q14596 966 aa16.41■□□□□ 0.22
TPM3-223ENST00000611659 CFAP43Q8NDM7 1665 aa16.41■□□□□ 0.22
TPM3-223ENST00000611659 UACAQ9BZF9 1416 aa16.41■□□□□ 0.22
TPM3-223ENST00000611659 FGD6Q6ZV73 1430 aa16.41■□□□□ 0.22
TPM3-223ENST00000611659 ERICH6BQ5W0A0 696 aa16.4■□□□□ 0.22
TPM3-223ENST00000611659 MRS2Q9HD23 443 aa16.39■□□□□ 0.21
TPM3-223ENST00000611659 MTUS2Q5JR59 1369 aa16.39■□□□□ 0.21
TPM3-223ENST00000611659 CADPSQ9ULU8 1353 aa16.39■□□□□ 0.21
TPM3-223ENST00000611659 EIF4G2P78344 907 aaKnown RBP eCLIP16.38■□□□□ 0.21
TPM3-223ENST00000611659 PTPRKQ15262 1439 aa16.38■□□□□ 0.21
TPM3-223ENST00000611659 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.38■□□□□ 0.213e-7■■□□□ 11.8
TPM3-223ENST00000611659 FGD5Q6ZNL6 1462 aa16.37■□□□□ 0.21
TPM3-223ENST00000611659 CNGB1Q14028 1251 aaPredicted RBP16.37■□□□□ 0.21
TPM3-223ENST00000611659 MYT1LQ9UL68 1186 aa16.37■□□□□ 0.21
TPM3-223ENST00000611659 RRP7BPQ9NSQ0 103 aa16.36■□□□□ 0.21
TPM3-223ENST00000611659 CHIC2Q9UKJ5 165 aa16.36■□□□□ 0.21
TPM3-223ENST00000611659 HFM1A2PYH4 1435 aa16.36■□□□□ 0.21
TPM3-223ENST00000611659 FYCO1Q9BQS8 1478 aa16.35■□□□□ 0.21
TPM3-223ENST00000611659 NOP58Q9Y2X3 529 aaKnown RBP16.34■□□□□ 0.21
TPM3-223ENST00000611659 AQRO60306 1485 aaKnown RBP eCLIP16.34■□□□□ 0.214e-7■■□□□ 12.7
TPM3-223ENST00000611659 CASKIN1Q8WXD9 1431 aa16.34■□□□□ 0.21
TPM3-223ENST00000611659 RAD54L2Q9Y4B4 1467 aa16.34■□□□□ 0.21
TPM3-223ENST00000611659 PRKRIP1Q9H875 184 aaPredicted RBP16.33■□□□□ 0.2
TPM3-223ENST00000611659 NAIPQ13075 1403 aa16.32■□□□□ 0.2
TPM3-223ENST00000611659 PTPN23Q9H3S7 1636 aa16.32■□□□□ 0.2
TPM3-223ENST00000611659 PAK3O75914 559 aaPredicted RBP16.31■□□□□ 0.2
TPM3-223ENST00000611659 C11orf95C9JLR9 678 aaPredicted RBP16.31■□□□□ 0.2
TPM3-223ENST00000611659 CNTLNQ9NXG0 1405 aa16.3■□□□□ 0.2
TPM3-223ENST00000611659 ZBED9Q6R2W3 1325 aa16.29■□□□□ 0.2
TPM3-223ENST00000611659 FMN1Q68DA7 1419 aa16.29■□□□□ 0.2
TPM3-223ENST00000611659 SENP3-EIF4A1A0A087X0R7 540 aa16.29■□□□□ 0.2
TPM3-223ENST00000611659 ARID3CA6NKF2 412 aa16.28■□□□□ 0.2
TPM3-223ENST00000611659 FOXD1Q16676 465 aa16.28■□□□□ 0.2
TPM3-223ENST00000611659 KDM5BQ9UGL1 1544 aa16.28■□□□□ 0.2
TPM3-223ENST00000611659 L3MBTL2Q969R5 705 aa16.27■□□□□ 0.19
TPM3-223ENST00000611659 NESP48681 1621 aa16.25■□□□□ 0.19
TPM3-223ENST00000611659 CCDC136Q96JN2 1154 aa16.24■□□□□ 0.19
TPM3-223ENST00000611659 POLR3GLQ9BT43 218 aa16.24■□□□□ 0.19
TPM3-223ENST00000611659 CCDC7Q96M83 1385 aa16.24■□□□□ 0.19
TPM3-223ENST00000611659 FANCD2Q9BXW9 1451 aa16.24■□□□□ 0.19
TPM3-223ENST00000611659 DNAJC5BQ9UF47 199 aa16.23■□□□□ 0.19
TPM3-223ENST00000611659 MYOM3Q5VTT5 1437 aa16.23■□□□□ 0.19
TPM3-223ENST00000611659 NCOA2Q15596 1464 aa16.23■□□□□ 0.19
TPM3-223ENST00000611659 ANP32AP39687 249 aaKnown RBP16.23■□□□□ 0.19
TPM3-223ENST00000611659 EFCAB5A4FU69 1503 aa16.23■□□□□ 0.19
TPM3-223ENST00000611659 AKNAQ7Z591 1439 aa16.21■□□□□ 0.19
TPM3-223ENST00000611659 TDRD9Q8NDG6 1382 aaKnown RBP16.21■□□□□ 0.19
TPM3-223ENST00000611659 RTL5Q5HYW3 569 aaPredicted RBP16.21■□□□□ 0.19
TPM3-223ENST00000611659 MPHOSPH9Q99550 1183 aa16.21■□□□□ 0.19
TPM3-223ENST00000611659 ZBTB47Q9UFB7 747 aaPredicted RBP16.19■□□□□ 0.18
TPM3-223ENST00000611659 SNAPC4Q5SXM2 1469 aa16.18■□□□□ 0.18
TPM3-223ENST00000611659 NCOA1Q15788 1441 aa16.18■□□□□ 0.18
TPM3-223ENST00000611659 IPO9Q96P70 1041 aaKnown RBP16.17■□□□□ 0.18
TPM3-223ENST00000611659 KIF7Q2M1P5 1343 aa16.17■□□□□ 0.18
TPM3-223ENST00000611659 NBPF8Q3BBV2 869 aa16.17■□□□□ 0.18
TPM3-223ENST00000611659 CC2D2AQ9P2K1 1620 aa16.15■□□□□ 0.18
TPM3-223ENST00000611659 DENND4BO75064 1496 aaPredicted RBP16.14■□□□□ 0.17
TPM3-223ENST00000611659 NPM2Q86SE8 214 aaKnown RBP16.14■□□□□ 0.17
TPM3-223ENST00000611659 NUDCQ9Y266 331 aa16.14■□□□□ 0.17
TPM3-223ENST00000611659 PRDM2Q13029 1718 aa16.14■□□□□ 0.17
TPM3-223ENST00000611659 POLA1P09884 1462 aaPredicted RBP16.13■□□□□ 0.17
TPM3-223ENST00000611659 ZNF326Q5BKZ1 582 aaKnown RBP16.12■□□□□ 0.17
TPM3-223ENST00000611659 SMG6Q86US8 1419 aaKnown RBP16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms