RNA–Protein interactions for RNA: ENST00000606788.5

CTSA-214, Transcript of cathepsin A, humanhuman

TSL 2

Gene CTSA, Length 3,056 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-214ENST00000606788 CCNB3Q8WWL7 1395 aa23.61■■□□□ 1.37
CTSA-214ENST00000606788 DIEXFQ68CQ4 756 aaKnown RBP23.61■■□□□ 1.37
CTSA-214ENST00000606788 PHLDB1Q86UU1 1377 aa23.56■■□□□ 1.36
CTSA-214ENST00000606788 FBLN2P98095 1184 aa23.56■■□□□ 1.36
CTSA-214ENST00000606788 PCF11O94913 1555 aaKnown RBP23.55■■□□□ 1.36
CTSA-214ENST00000606788 FHAD1B1AJZ9 1412 aa23.52■■□□□ 1.36
CTSA-214ENST00000606788 TIAM1Q13009 1591 aa23.52■■□□□ 1.36
CTSA-214ENST00000606788 ZNF608Q9ULD9 1512 aaPredicted RBP23.52■■□□□ 1.36
CTSA-214ENST00000606788 ERCC6Q03468 1493 aa23.5■■□□□ 1.35
CTSA-214ENST00000606788 LRRC9Q6ZRR7 1453 aa23.5■■□□□ 1.35
CTSA-214ENST00000606788 RRBP1Q9P2E9 1410 aaKnown RBP23.49■■□□□ 1.35
CTSA-214ENST00000606788 ABCA5Q8WWZ7 1642 aa23.48■■□□□ 1.35
CTSA-214ENST00000606788 CUL7Q14999 1698 aa23.48■■□□□ 1.35
CTSA-214ENST00000606788 ZNF316A6NFI3 1004 aaPredicted RBP23.48■■□□□ 1.35
CTSA-214ENST00000606788 MRC2Q9UBG0 1479 aa23.48■■□□□ 1.35
CTSA-214ENST00000606788 DHX57Q6P158 1386 aaKnown RBP23.47■■□□□ 1.35
CTSA-214ENST00000606788 WDR97A6NE52 1622 aa23.47■■□□□ 1.35
CTSA-214ENST00000606788 TARBP1Q13395 1621 aaKnown RBP23.44■■□□□ 1.34
CTSA-214ENST00000606788 MTUS2Q5JR59 1369 aa23.42■■□□□ 1.34
CTSA-214ENST00000606788 CTTNBP2Q8WZ74 1663 aa23.4■■□□□ 1.34
CTSA-214ENST00000606788 RAB3GAP2Q9H2M9 1393 aa23.39■■□□□ 1.34
CTSA-214ENST00000606788 NEUROD1Q13562 356 aa23.38■■□□□ 1.33
CTSA-214ENST00000606788 CASKIN1Q8WXD9 1431 aa23.36■■□□□ 1.33
CTSA-214ENST00000606788 FMN1Q68DA7 1419 aa23.35■■□□□ 1.33
CTSA-214ENST00000606788 YTHDC1Q96MU7 727 aaKnown RBP23.35■■□□□ 1.33
CTSA-214ENST00000606788 EFCAB5A4FU69 1503 aa23.32■■□□□ 1.32
CTSA-214ENST00000606788 FYCO1Q9BQS8 1478 aa23.32■■□□□ 1.32
CTSA-214ENST00000606788 CHMP7Q8WUX9 453 aaPredicted RBP23.31■■□□□ 1.32
CTSA-214ENST00000606788 SIN3AQ96ST3 1273 aa23.31■■□□□ 1.32
CTSA-214ENST00000606788 CHIC2Q9UKJ5 165 aa23.3■■□□□ 1.32
CTSA-214ENST00000606788 GRIN2BQ13224 1484 aa23.29■■□□□ 1.32
CTSA-214ENST00000606788 SNAPC4Q5SXM2 1469 aa23.27■■□□□ 1.32
CTSA-214ENST00000606788 PBRM1Q86U86 1689 aa23.27■■□□□ 1.32
CTSA-214ENST00000606788 MAP3K1Q13233 1512 aa23.23■■□□□ 1.31
CTSA-214ENST00000606788 IFT140Q96RY7 1462 aa23.23■■□□□ 1.31
CTSA-214ENST00000606788 MIER1Q8N108 512 aa23.23■■□□□ 1.31
CTSA-214ENST00000606788 SETD5Q9C0A6 1442 aa23.22■■□□□ 1.31
CTSA-214ENST00000606788 CFAP43Q8NDM7 1665 aa23.22■■□□□ 1.31
CTSA-214ENST00000606788 ADAMTS12P58397 1594 aa23.2■■□□□ 1.3
CTSA-214ENST00000606788 RRP7BPQ9NSQ0 103 aa23.2■■□□□ 1.3
CTSA-214ENST00000606788 SAMD9Q5K651 1589 aa23.18■■□□□ 1.3
CTSA-214ENST00000606788 WDR62O43379 1518 aa23.17■■□□□ 1.3
CTSA-214ENST00000606788 IQGAP2Q13576 1575 aa23.17■■□□□ 1.3
CTSA-214ENST00000606788 CDK13Q14004 1512 aaKnown RBP23.17■■□□□ 1.3
CTSA-214ENST00000606788 FGD6Q6ZV73 1430 aa23.16■■□□□ 1.3
CTSA-214ENST00000606788 NCOA2Q15596 1464 aa23.15■■□□□ 1.3
CTSA-214ENST00000606788 LRRIQ1Q96JM4 1722 aa23.14■■□□□ 1.3
CTSA-214ENST00000606788 HIRIP3Q9BW71 556 aaPredicted RBP23.14■■□□□ 1.29
CTSA-214ENST00000606788 EIF4G3O43432 1585 aaKnown RBP23.13■■□□□ 1.29
CTSA-214ENST00000606788 PTPRKQ15262 1439 aa23.12■■□□□ 1.29
CTSA-214ENST00000606788 MAGI3Q5TCQ9 1506 aa23.11■■□□□ 1.29
CTSA-214ENST00000606788 SCAF1Q9H7N4 1312 aaKnown RBP23.11■■□□□ 1.29
CTSA-214ENST00000606788 CLSPNQ9HAW4 1339 aa23.09■■□□□ 1.29
CTSA-214ENST00000606788 GRIN2AQ12879 1464 aa23.07■■□□□ 1.28
CTSA-214ENST00000606788 ZNF644Q9H582 1327 aaPredicted RBP23.05■■□□□ 1.28
CTSA-214ENST00000606788 MAPKBP1O60336 1514 aa23.05■■□□□ 1.28
CTSA-214ENST00000606788 TRIM52Q96A61 297 aa23.05■■□□□ 1.28
CTSA-214ENST00000606788 ZNF777Q9ULD5 760 aaPredicted RBP23.05■■□□□ 1.28
CTSA-214ENST00000606788 MYOM3Q5VTT5 1437 aa23.04■■□□□ 1.28
CTSA-214ENST00000606788 EPRSP07814 1512 aaKnown RBP23.04■■□□□ 1.28
CTSA-214ENST00000606788 JPH4Q96JJ6 628 aa23.03■■□□□ 1.28
CTSA-214ENST00000606788 THOC2Q8NI27 1593 aaKnown RBP23.01■■□□□ 1.27
CTSA-214ENST00000606788 KIAA0586Q9BVV6 1533 aa23■■□□□ 1.27
CTSA-214ENST00000606788 DISP1Q96F81 1524 aa22.99■■□□□ 1.27
CTSA-214ENST00000606788 FOXD1Q16676 465 aa22.97■■□□□ 1.27
CTSA-214ENST00000606788 ACIN1Q9UKV3 1341 aaKnown RBP22.97■■□□□ 1.27
CTSA-214ENST00000606788 PLB1Q6P1J6 1458 aa22.96■■□□□ 1.27
CTSA-214ENST00000606788 EHBP1L1Q8N3D4 1523 aa22.95■■□□□ 1.26
CTSA-214ENST00000606788 SUPT6HQ7KZ85 1726 aaKnown RBP22.95■■□□□ 1.26
CTSA-214ENST00000606788 CCDC18Q5T9S5 1454 aa22.94■■□□□ 1.26
CTSA-214ENST00000606788 HECW1Q76N89 1606 aa22.94■■□□□ 1.26
CTSA-214ENST00000606788 CEP170Q5SW79 1584 aa22.92■■□□□ 1.26
CTSA-214ENST00000606788 UGGT2Q9NYU1 1516 aa22.92■■□□□ 1.26
CTSA-214ENST00000606788 SYNJ2O15056 1496 aa22.91■■□□□ 1.26
CTSA-214ENST00000606788 CENPBP07199 599 aaPredicted RBP22.91■■□□□ 1.26
CTSA-214ENST00000606788 PRG4Q92954 1404 aaPredicted RBP22.91■■□□□ 1.26
CTSA-214ENST00000606788 KIAA0556O60303 1618 aa22.9■■□□□ 1.26
CTSA-214ENST00000606788 NUP153P49790 1475 aaKnown RBP22.89■■□□□ 1.25
CTSA-214ENST00000606788 PTPN23Q9H3S7 1636 aa22.89■■□□□ 1.25
CTSA-214ENST00000606788 NAIPQ13075 1403 aa22.88■■□□□ 1.25
CTSA-214ENST00000606788 MAGI1Q96QZ7 1491 aaPredicted RBP22.88■■□□□ 1.25
CTSA-214ENST00000606788 CDK11AQ9UQ88 783 aaPredicted RBP22.87■■□□□ 1.25
CTSA-214ENST00000606788 GTF3C3Q9Y5Q9 886 aa22.85■■□□□ 1.25
CTSA-214ENST00000606788 DDX10Q13206 875 aaKnown RBP22.85■■□□□ 1.25
CTSA-214ENST00000606788 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.84■■□□□ 1.25
CTSA-214ENST00000606788 HFM1A2PYH4 1435 aa22.84■■□□□ 1.25
CTSA-214ENST00000606788 CFDP1Q9UEE9 299 aaPredicted RBP22.84■■□□□ 1.25
CTSA-214ENST00000606788 TONSLQ96HA7 1378 aa22.82■■□□□ 1.24
CTSA-214ENST00000606788 CARMIL2Q6F5E8 1435 aa22.79■■□□□ 1.24
CTSA-214ENST00000606788 PPP1R15AO75807 674 aaPredicted RBP22.78■■□□□ 1.24
CTSA-214ENST00000606788 KCNH8Q96L42 1107 aa22.78■■□□□ 1.24
CTSA-214ENST00000606788 RAPGEF6Q8TEU7 1601 aa22.77■■□□□ 1.24
CTSA-214ENST00000606788 ARHGEF11O15085 1522 aa22.76■■□□□ 1.23
CTSA-214ENST00000606788 PLEKHD1A6NEE1 506 aa22.75■■□□□ 1.23
CTSA-214ENST00000606788 UACAQ9BZF9 1416 aa22.75■■□□□ 1.23
CTSA-214ENST00000606788 KDM6BO15054 1643 aa22.75■■□□□ 1.23
CTSA-214ENST00000606788 NUP160Q12769 1436 aa22.73■■□□□ 1.23
CTSA-214ENST00000606788 MPHOSPH9Q99550 1183 aa22.72■■□□□ 1.23
CTSA-214ENST00000606788 SLC4A1APQ9BWU0 796 aaKnown RBP22.67■■□□□ 1.22
CTSA-214ENST00000606788 TROQ12816 1431 aaPredicted RBP22.67■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms