RNA–Protein interactions for RNA: ENST00000606499.1

MSH6-211, Transcript of mutS homolog 6, humanhuman

TSL 3

Gene MSH6, Length 833 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-211ENST00000606499 CLASP1Q7Z460 1538 aa12.66□□□□□ -0.38
MSH6-211ENST00000606499 IQGAP2Q13576 1575 aa12.62□□□□□ -0.39
MSH6-211ENST00000606499 SHROOM2Q13796 1616 aa12.59□□□□□ -0.39
MSH6-211ENST00000606499 KIAA0586Q9BVV6 1533 aa12.59□□□□□ -0.39
MSH6-211ENST00000606499 OSCARQ8IYS5 282 aa12.58□□□□□ -0.4
MSH6-211ENST00000606499 LOC105371045A0A1W2PR82 267 aa12.54□□□□□ -0.4
MSH6-211ENST00000606499 UBTFP17480 764 aaKnown RBP12.54□□□□□ -0.4
MSH6-211ENST00000606499 ERCC6L2Q5T890 1561 aa12.53□□□□□ -0.4
MSH6-211ENST00000606499 UGGT2Q9NYU1 1516 aa12.52□□□□□ -0.4
MSH6-211ENST00000606499 SAMD9Q5K651 1589 aa12.51□□□□□ -0.41
MSH6-211ENST00000606499 TNIKQ9UKE5 1360 aa12.5□□□□□ -0.41
MSH6-211ENST00000606499 KIAA0556O60303 1618 aa12.5□□□□□ -0.41
MSH6-211ENST00000606499 RIMBP3CA6NJZ7 1639 aa12.49□□□□□ -0.41
MSH6-211ENST00000606499 RIMBP3BA6NNM3 1639 aa12.49□□□□□ -0.41
MSH6-211ENST00000606499 RIMBP3Q9UFD9 1639 aa12.49□□□□□ -0.41
MSH6-211ENST00000606499 DISP1Q96F81 1524 aa12.49□□□□□ -0.41
MSH6-211ENST00000606499 ARHGEF11O15085 1522 aa12.48□□□□□ -0.41
MSH6-211ENST00000606499 PRG4Q92954 1404 aaPredicted RBP12.48□□□□□ -0.41
MSH6-211ENST00000606499 RANGAP1P46060 587 aaPredicted RBP12.48□□□□□ -0.41
MSH6-211ENST00000606499 EFCAB5A4FU69 1503 aa12.47□□□□□ -0.41
MSH6-211ENST00000606499 JPH4Q96JJ6 628 aa12.47□□□□□ -0.41
MSH6-211ENST00000606499 CEP162Q5TB80 1403 aa12.45□□□□□ -0.42
MSH6-211ENST00000606499 ARHGAP35Q9NRY4 1499 aa12.44□□□□□ -0.42
MSH6-211ENST00000606499 CLIP1P30622 1438 aa12.43□□□□□ -0.42
MSH6-211ENST00000606499 CARMIL2Q6F5E8 1435 aa12.43□□□□□ -0.42
MSH6-211ENST00000606499 FHOD3Q2V2M9 1422 aa12.41□□□□□ -0.42
MSH6-211ENST00000606499 ARAP1Q96P48 1450 aa12.4□□□□□ -0.42
MSH6-211ENST00000606499 P3H3Q8IVL6 736 aa12.4□□□□□ -0.42
MSH6-211ENST00000606499 DNAJC5Q9H3Z4 198 aa12.38□□□□□ -0.43
MSH6-211ENST00000606499 TTBK1Q5TCY1 1321 aaPredicted RBP12.37□□□□□ -0.43
MSH6-211ENST00000606499 PCF11O94913 1555 aaKnown RBP12.35□□□□□ -0.43
MSH6-211ENST00000606499 PTPRGP23470 1445 aa12.34□□□□□ -0.43
MSH6-211ENST00000606499 RAPGEF6Q8TEU7 1601 aa12.33□□□□□ -0.43
MSH6-211ENST00000606499 ADCY10Q96PN6 1610 aa12.33□□□□□ -0.43
MSH6-211ENST00000606499 ABCA8O94911 1581 aa12.33□□□□□ -0.44
MSH6-211ENST00000606499 PLB1Q6P1J6 1458 aa12.33□□□□□ -0.44
MSH6-211ENST00000606499 LRRIQ1Q96JM4 1722 aa12.31□□□□□ -0.44
MSH6-211ENST00000606499 PHF23Q9BUL5 403 aaPredicted RBP12.31□□□□□ -0.44
MSH6-211ENST00000606499 FMN1Q68DA7 1419 aa12.3□□□□□ -0.44
MSH6-211ENST00000606499 ABCC2Q92887 1545 aa12.3□□□□□ -0.44
MSH6-211ENST00000606499 HECW1Q76N89 1606 aa12.29□□□□□ -0.44
MSH6-211ENST00000606499 CYB5RLQ6IPT4 315 aa12.28□□□□□ -0.44
MSH6-211ENST00000606499 VPS8Q8N3P4 1428 aa12.28□□□□□ -0.44
MSH6-211ENST00000606499 UACAQ9BZF9 1416 aa12.28□□□□□ -0.44
MSH6-211ENST00000606499 FYCO1Q9BQS8 1478 aa12.27□□□□□ -0.44
MSH6-211ENST00000606499 UHRF1BP1LA0JNW5 1464 aa12.27□□□□□ -0.45
MSH6-211ENST00000606499 NUP153P49790 1475 aaKnown RBP12.27□□□□□ -0.45
MSH6-211ENST00000606499 ZCCHC11Q5TAX3 1644 aaKnown RBP12.26□□□□□ -0.45
MSH6-211ENST00000606499 CASKIN1Q8WXD9 1431 aa12.25□□□□□ -0.45
MSH6-211ENST00000606499 CDK13Q14004 1512 aaKnown RBP12.24□□□□□ -0.45
MSH6-211ENST00000606499 CFAP43Q8NDM7 1665 aa12.23□□□□□ -0.45
MSH6-211ENST00000606499 KDM5BQ9UGL1 1544 aa12.21□□□□□ -0.45
MSH6-211ENST00000606499 ARID3CA6NKF2 412 aa12.21□□□□□ -0.45
MSH6-211ENST00000606499 EPRSP07814 1512 aaKnown RBP12.21□□□□□ -0.46
MSH6-211ENST00000606499 ATP1B4Q9UN42 357 aaPredicted RBP12.2□□□□□ -0.46
MSH6-211ENST00000606499 ATP10BO94823 1461 aa12.19□□□□□ -0.46
MSH6-211ENST00000606499 CCDC18Q5T9S5 1454 aa12.19□□□□□ -0.46
MSH6-211ENST00000606499 TIAM1Q13009 1591 aa12.18□□□□□ -0.46
MSH6-211ENST00000606499 MAPKBP1O60336 1514 aa12.16□□□□□ -0.46
MSH6-211ENST00000606499 MAGI3Q5TCQ9 1506 aa12.16□□□□□ -0.46
MSH6-211ENST00000606499 ASXL2Q76L83 1435 aa12.13□□□□□ -0.47
MSH6-211ENST00000606499 MAP3K1Q13233 1512 aa12.12□□□□□ -0.47
MSH6-211ENST00000606499 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.12□□□□□ -0.47
MSH6-211ENST00000606499 NPM1P06748 294 aaKnown RBP eCLIP12.12□□□□□ -0.47
MSH6-211ENST00000606499 HNRNPUL2Q1KMD3 747 aaKnown RBP12.12□□□□□ -0.47
MSH6-211ENST00000606499 SENP3Q9H4L4 574 aaPredicted RBP12.12□□□□□ -0.47
MSH6-211ENST00000606499 WDR7Q9Y4E6 1490 aa12.12□□□□□ -0.47
MSH6-211ENST00000606499 KIF14Q15058 1648 aa12.11□□□□□ -0.47
MSH6-211ENST00000606499 EHBP1L1Q8N3D4 1523 aa12.11□□□□□ -0.47
MSH6-211ENST00000606499 DIP2BQ9P265 1576 aa12.1□□□□□ -0.47
MSH6-211ENST00000606499 KIF13AQ9H1H9 1805 aa12.1□□□□□ -0.47
MSH6-211ENST00000606499 LRRC9Q6ZRR7 1453 aa12.08□□□□□ -0.47
MSH6-211ENST00000606499 TROQ12816 1431 aaPredicted RBP12.08□□□□□ -0.48
MSH6-211ENST00000606499 TTC37Q6PGP7 1564 aa12.08□□□□□ -0.48
MSH6-211ENST00000606499 SUPT6HQ7KZ85 1726 aaKnown RBP12.07□□□□□ -0.48
MSH6-211ENST00000606499 MTUS2Q5JR59 1369 aa12.06□□□□□ -0.48
MSH6-211ENST00000606499 ABCA9Q8IUA7 1624 aa12.05□□□□□ -0.48
MSH6-211ENST00000606499 APLP2Q06481 763 aa12.05□□□□□ -0.48
MSH6-211ENST00000606499 KANK4Q5T7N3 995 aaPredicted RBP12.05□□□□□ -0.48
MSH6-211ENST00000606499 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.05□□□□□ -0.489e-9■■■■■ 31
MSH6-211ENST00000606499 MAP3K4Q9Y6R4 1608 aa12.04□□□□□ -0.48
MSH6-211ENST00000606499 ABCC10Q5T3U5 1492 aa12.04□□□□□ -0.48
MSH6-211ENST00000606499 PLEKHD1A6NEE1 506 aa12.04□□□□□ -0.48
MSH6-211ENST00000606499 CDK11AQ9UQ88 783 aaPredicted RBP12.04□□□□□ -0.48
MSH6-211ENST00000606499 CDC42BPAQ5VT25 1732 aa12.03□□□□□ -0.48
MSH6-211ENST00000606499 MYO5CQ9NQX4 1742 aa12.03□□□□□ -0.48
MSH6-211ENST00000606499 GLI2P10070 1586 aa12.03□□□□□ -0.48
MSH6-211ENST00000606499 KCNH8Q96L42 1107 aa12.02□□□□□ -0.49
MSH6-211ENST00000606499 PREX2Q70Z35 1606 aa12.01□□□□□ -0.49
MSH6-211ENST00000606499 ITSN2Q9NZM3 1697 aa12.01□□□□□ -0.49
MSH6-211ENST00000606499 PPARGC1BQ86YN6 1023 aaKnown RBP12.01□□□□□ -0.49
MSH6-211ENST00000606499 TSPOAP1O95153 1857 aa12.01□□□□□ -0.49
MSH6-211ENST00000606499 NCOA2Q15596 1464 aa12.01□□□□□ -0.49
MSH6-211ENST00000606499 PPRC1Q5VV67 1664 aaKnown RBP12□□□□□ -0.49
MSH6-211ENST00000606499 CDC42BPBQ9Y5S2 1711 aa12□□□□□ -0.49
MSH6-211ENST00000606499 FAM69CQ0P6D2 419 aa11.96□□□□□ -0.49
MSH6-211ENST00000606499 TRHP20396 242 aaPredicted RBP11.95□□□□□ -0.5
MSH6-211ENST00000606499 ARHGAP5Q13017 1502 aa11.95□□□□□ -0.5
MSH6-211ENST00000606499 GPATCH8Q9UKJ3 1502 aaKnown RBP11.95□□□□□ -0.5
MSH6-211ENST00000606499 CD109Q6YHK3 1445 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms