RNA–Protein interactions for RNA: ENST00000600274.5

ARHGEF1-220, Transcript of Rho guanine nucleotide exchange factor 1, humanhuman

TSL 1 (best)

Gene ARHGEF1, Length 3,439 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF1-220ENST00000600274 TOPBP1Q92547 1522 aa16.87■□□□□ 0.29
ARHGEF1-220ENST00000600274 ACIN1Q9UKV3 1341 aaKnown RBP16.85■□□□□ 0.29
ARHGEF1-220ENST00000600274 DHX57Q6P158 1386 aaKnown RBP16.82■□□□□ 0.28
ARHGEF1-220ENST00000600274 PHLDB1Q86UU1 1377 aa16.78■□□□□ 0.28
ARHGEF1-220ENST00000600274 FBLN2P98095 1184 aa16.78■□□□□ 0.28
ARHGEF1-220ENST00000600274 DNMBPQ6XZF7 1577 aa16.78■□□□□ 0.28
ARHGEF1-220ENST00000600274 PDS5BQ9NTI5 1447 aa16.77■□□□□ 0.28
ARHGEF1-220ENST00000600274 SIN3AQ96ST3 1273 aa16.77■□□□□ 0.28
ARHGEF1-220ENST00000600274 URB2Q14146 1524 aaKnown RBP16.77■□□□□ 0.28
ARHGEF1-220ENST00000600274 RAB3GAP2Q9H2M9 1393 aa16.76■□□□□ 0.27
ARHGEF1-220ENST00000600274 FHAD1B1AJZ9 1412 aa16.74■□□□□ 0.27
ARHGEF1-220ENST00000600274 MTUS2Q5JR59 1369 aa16.74■□□□□ 0.27
ARHGEF1-220ENST00000600274 HIRIP3Q9BW71 556 aaPredicted RBP16.74■□□□□ 0.27
ARHGEF1-220ENST00000600274 PRDM2Q13029 1718 aa16.73■□□□□ 0.27
ARHGEF1-220ENST00000600274 CHIC2Q9UKJ5 165 aa16.73■□□□□ 0.27
ARHGEF1-220ENST00000600274 ABCA10Q8WWZ4 1543 aa16.72■□□□□ 0.27
ARHGEF1-220ENST00000600274 RRBP1Q9P2E9 1410 aaKnown RBP16.72■□□□□ 0.27
ARHGEF1-220ENST00000600274 GAPVD1Q14C86 1478 aa16.71■□□□□ 0.27
ARHGEF1-220ENST00000600274 LRRC9Q6ZRR7 1453 aa16.7■□□□□ 0.26
ARHGEF1-220ENST00000600274 AQRO60306 1485 aaKnown RBP eCLIP16.69■□□□□ 0.261e-6■■■■■ 36
ARHGEF1-220ENST00000600274 MYT1Q01538 1121 aa16.68■□□□□ 0.26
ARHGEF1-220ENST00000600274 TIAM1Q13009 1591 aa16.68■□□□□ 0.26
ARHGEF1-220ENST00000600274 PCF11O94913 1555 aaKnown RBP16.67■□□□□ 0.26
ARHGEF1-220ENST00000600274 RRP7BPQ9NSQ0 103 aa16.64■□□□□ 0.25
ARHGEF1-220ENST00000600274 LAMC3Q9Y6N6 1575 aa16.63■□□□□ 0.25
ARHGEF1-220ENST00000600274 SETD5Q9C0A6 1442 aa16.63■□□□□ 0.25
ARHGEF1-220ENST00000600274 TRIM52Q96A61 297 aa16.61■□□□□ 0.25
ARHGEF1-220ENST00000600274 CLSPNQ9HAW4 1339 aa16.6■□□□□ 0.25
ARHGEF1-220ENST00000600274 FMN1Q68DA7 1419 aa16.59■□□□□ 0.25
ARHGEF1-220ENST00000600274 DDX10Q13206 875 aaKnown RBP16.56■□□□□ 0.24
ARHGEF1-220ENST00000600274 CASKIN1Q8WXD9 1431 aa16.56■□□□□ 0.24
ARHGEF1-220ENST00000600274 KIF21AQ7Z4S6 1674 aa16.56■□□□□ 0.24
ARHGEF1-220ENST00000600274 CHMP7Q8WUX9 453 aaPredicted RBP16.54■□□□□ 0.24
ARHGEF1-220ENST00000600274 ERCC6Q03468 1493 aa16.54■□□□□ 0.24
ARHGEF1-220ENST00000600274 FYCO1Q9BQS8 1478 aa16.52■□□□□ 0.24
ARHGEF1-220ENST00000600274 ZNF777Q9ULD5 760 aaPredicted RBP16.51■□□□□ 0.23
ARHGEF1-220ENST00000600274 ZNF608Q9ULD9 1512 aaPredicted RBP16.5■□□□□ 0.23
ARHGEF1-220ENST00000600274 CUL7Q14999 1698 aa16.5■□□□□ 0.23
ARHGEF1-220ENST00000600274 FGD6Q6ZV73 1430 aa16.49■□□□□ 0.23
ARHGEF1-220ENST00000600274 KCNH8Q96L42 1107 aa16.48■□□□□ 0.23
ARHGEF1-220ENST00000600274 EFCAB5A4FU69 1503 aa16.48■□□□□ 0.23
ARHGEF1-220ENST00000600274 FOXD1Q16676 465 aa16.48■□□□□ 0.23
ARHGEF1-220ENST00000600274 TONSLQ96HA7 1378 aa16.46■□□□□ 0.23
ARHGEF1-220ENST00000600274 NCOA2Q15596 1464 aa16.45■□□□□ 0.22
ARHGEF1-220ENST00000600274 MRC2Q9UBG0 1479 aa16.44■□□□□ 0.22
ARHGEF1-220ENST00000600274 MAP3K1Q13233 1512 aa16.44■□□□□ 0.22
ARHGEF1-220ENST00000600274 CTTNBP2Q8WZ74 1663 aa16.44■□□□□ 0.22
ARHGEF1-220ENST00000600274 ABCA5Q8WWZ7 1642 aa16.43■□□□□ 0.22
ARHGEF1-220ENST00000600274 CNGB1Q14028 1251 aaPredicted RBP16.42■□□□□ 0.22
ARHGEF1-220ENST00000600274 MAPKBP1O60336 1514 aa16.42■□□□□ 0.22
ARHGEF1-220ENST00000600274 SNAPC4Q5SXM2 1469 aa16.42■□□□□ 0.22
ARHGEF1-220ENST00000600274 PTPRKQ15262 1439 aa16.42■□□□□ 0.22
ARHGEF1-220ENST00000600274 ZNF644Q9H582 1327 aaPredicted RBP16.41■□□□□ 0.22
ARHGEF1-220ENST00000600274 CDK13Q14004 1512 aaKnown RBP16.4■□□□□ 0.22
ARHGEF1-220ENST00000600274 GRIN2BQ13224 1484 aa16.39■□□□□ 0.21
ARHGEF1-220ENST00000600274 CFAP43Q8NDM7 1665 aa16.39■□□□□ 0.21
ARHGEF1-220ENST00000600274 MYOM3Q5VTT5 1437 aa16.38■□□□□ 0.21
ARHGEF1-220ENST00000600274 CCDC18Q5T9S5 1454 aa16.38■□□□□ 0.21
ARHGEF1-220ENST00000600274 PPP1R15AO75807 674 aaPredicted RBP16.36■□□□□ 0.21
ARHGEF1-220ENST00000600274 TARBP1Q13395 1621 aaKnown RBP16.36■□□□□ 0.21
ARHGEF1-220ENST00000600274 WDR97A6NE52 1622 aa16.36■□□□□ 0.21
ARHGEF1-220ENST00000600274 ZNF326Q5BKZ1 582 aaKnown RBP16.34■□□□□ 0.21
ARHGEF1-220ENST00000600274 CDK11AQ9UQ88 783 aaPredicted RBP16.34■□□□□ 0.21
ARHGEF1-220ENST00000600274 IQGAP2Q13576 1575 aa16.32■□□□□ 0.2
ARHGEF1-220ENST00000600274 POLR3GLQ9BT43 218 aa16.32■□□□□ 0.2
ARHGEF1-220ENST00000600274 CFDP1Q9UEE9 299 aaPredicted RBP16.31■□□□□ 0.2
ARHGEF1-220ENST00000600274 EPRSP07814 1512 aaKnown RBP16.3■□□□□ 0.2
ARHGEF1-220ENST00000600274 MAGI3Q5TCQ9 1506 aa16.3■□□□□ 0.2
ARHGEF1-220ENST00000600274 IFT140Q96RY7 1462 aa16.3■□□□□ 0.2
ARHGEF1-220ENST00000600274 JPH4Q96JJ6 628 aa16.3■□□□□ 0.2
ARHGEF1-220ENST00000600274 SAMD9Q5K651 1589 aa16.29■□□□□ 0.2
ARHGEF1-220ENST00000600274 NAIPQ13075 1403 aa16.29■□□□□ 0.2
ARHGEF1-220ENST00000600274 BCANQ96GW7 911 aa16.28■□□□□ 0.2
ARHGEF1-220ENST00000600274 SLC4A1APQ9BWU0 796 aaKnown RBP16.28■□□□□ 0.2
ARHGEF1-220ENST00000600274 ANP32CO43423 234 aa16.28■□□□□ 0.2
ARHGEF1-220ENST00000600274 MPHOSPH9Q99550 1183 aa16.27■□□□□ 0.19
ARHGEF1-220ENST00000600274 PBRM1Q86U86 1689 aa16.27■□□□□ 0.19
ARHGEF1-220ENST00000600274 HFM1A2PYH4 1435 aa16.26■□□□□ 0.19
ARHGEF1-220ENST00000600274 EHBP1L1Q8N3D4 1523 aa16.26■□□□□ 0.19
ARHGEF1-220ENST00000600274 ADAMTS12P58397 1594 aa16.26■□□□□ 0.19
ARHGEF1-220ENST00000600274 SUPT6HQ7KZ85 1726 aaKnown RBP16.25■□□□□ 0.19
ARHGEF1-220ENST00000600274 THOC2Q8NI27 1593 aaKnown RBP16.25■□□□□ 0.19
ARHGEF1-220ENST00000600274 UACAQ9BZF9 1416 aa16.24■□□□□ 0.19
ARHGEF1-220ENST00000600274 PRG4Q92954 1404 aaPredicted RBP16.24■□□□□ 0.19
ARHGEF1-220ENST00000600274 LRRIQ1Q96JM4 1722 aa16.23■□□□□ 0.19
ARHGEF1-220ENST00000600274 PTPN23Q9H3S7 1636 aa16.23■□□□□ 0.19
ARHGEF1-220ENST00000600274 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.22■□□□□ 0.194e-7■□□□□ 8.1
ARHGEF1-220ENST00000600274 GRIN2AQ12879 1464 aa16.21■□□□□ 0.19
ARHGEF1-220ENST00000600274 PLB1Q6P1J6 1458 aa16.21■□□□□ 0.19
ARHGEF1-220ENST00000600274 PLEKHD1A6NEE1 506 aa16.21■□□□□ 0.19
ARHGEF1-220ENST00000600274 HECW1Q76N89 1606 aa16.21■□□□□ 0.19
ARHGEF1-220ENST00000600274 L3MBTL2Q969R5 705 aa16.2■□□□□ 0.18
ARHGEF1-220ENST00000600274 KIAA0586Q9BVV6 1533 aa16.2■□□□□ 0.18
ARHGEF1-220ENST00000600274 TIMELESSQ9UNS1 1208 aa16.2■□□□□ 0.18
ARHGEF1-220ENST00000600274 UGGT2Q9NYU1 1516 aa16.19■□□□□ 0.18
ARHGEF1-220ENST00000600274 HSPA5P11021 654 aaKnown RBP16.18■□□□□ 0.18
ARHGEF1-220ENST00000600274 EIF4G3O43432 1585 aaKnown RBP16.17■□□□□ 0.18
ARHGEF1-220ENST00000600274 DISP1Q96F81 1524 aa16.16■□□□□ 0.18
ARHGEF1-220ENST00000600274 WDR62O43379 1518 aa16.15■□□□□ 0.18
ARHGEF1-220ENST00000600274 NUP153P49790 1475 aaKnown RBP16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms