RNA–Protein interactions for RNA: ENST00000594759.5

LIG1-207, Transcript of DNA ligase 1, humanhuman

TSL 1 (best)

Gene LIG1, Length 4,102 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-207ENST00000594759 CCDC88BA6NC98 1476 aa16.66■□□□□ 0.26
LIG1-207ENST00000594759 PPM1GO15355 546 aaPredicted RBP16.66■□□□□ 0.26
LIG1-207ENST00000594759 SOGA1O94964 1423 aa16.65■□□□□ 0.26
LIG1-207ENST00000594759 IL27Q8NEV9 243 aa16.64■□□□□ 0.25
LIG1-207ENST00000594759 FAM9BQ8IZU0 186 aa16.63■□□□□ 0.25
LIG1-207ENST00000594759 UBE2Q2Q8WVN8 375 aa16.63■□□□□ 0.25
LIG1-207ENST00000594759 PKNOX2Q96KN3 472 aa16.63■□□□□ 0.25
LIG1-207ENST00000594759 ABCC8Q09428 1581 aa16.63■□□□□ 0.25
LIG1-207ENST00000594759 TNIKQ9UKE5 1360 aa16.59■□□□□ 0.25
LIG1-207ENST00000594759 IPO9Q96P70 1041 aaKnown RBP16.57■□□□□ 0.24
LIG1-207ENST00000594759 CLIP1P30622 1438 aa16.55■□□□□ 0.24
LIG1-207ENST00000594759 VSIG10Q8N0Z9 540 aa16.55■□□□□ 0.24
LIG1-207ENST00000594759 CCER2I3L3R5 266 aa16.54■□□□□ 0.24
LIG1-207ENST00000594759 NAP1L5Q96NT1 182 aaPredicted RBP16.53■□□□□ 0.24
LIG1-207ENST00000594759 TIMELESSQ9UNS1 1208 aa16.52■□□□□ 0.24
LIG1-207ENST00000594759 ARXQ96QS3 562 aa16.51■□□□□ 0.23
LIG1-207ENST00000594759 RSPH6AQ9H0K4 717 aa16.51■□□□□ 0.23
LIG1-207ENST00000594759 DDRGK1Q96HY6 314 aa16.48■□□□□ 0.23
LIG1-207ENST00000594759 MRS2Q9HD23 443 aa16.47■□□□□ 0.23
LIG1-207ENST00000594759 GOLGA3Q08378 1498 aa16.47■□□□□ 0.23
LIG1-207ENST00000594759 SIN3AQ96ST3 1273 aa16.45■□□□□ 0.22
LIG1-207ENST00000594759 USP35Q9P2H5 1018 aa16.45■□□□□ 0.22
LIG1-207ENST00000594759 EEA1Q15075 1411 aa16.44■□□□□ 0.22
LIG1-207ENST00000594759 PAK3O75914 559 aaPredicted RBP16.43■□□□□ 0.22
LIG1-207ENST00000594759 TONSLQ96HA7 1378 aa16.43■□□□□ 0.22
LIG1-207ENST00000594759 TOP2AP11388 1531 aaKnown RBP16.41■□□□□ 0.22
LIG1-207ENST00000594759 PODXL2Q9NZ53 605 aa16.4■□□□□ 0.22
LIG1-207ENST00000594759 SMARCA4P51532 1647 aa16.4■□□□□ 0.22
LIG1-207ENST00000594759 HSP90AA1P07900 732 aaKnown RBP16.38■□□□□ 0.21
LIG1-207ENST00000594759 ZNF777Q9ULD5 760 aaPredicted RBP16.38■□□□□ 0.21
LIG1-207ENST00000594759 ATAD2BQ9ULI0 1458 aa16.38■□□□□ 0.21
LIG1-207ENST00000594759 SENP3-EIF4A1A0A087X0R7 540 aa16.38■□□□□ 0.21
LIG1-207ENST00000594759 DHX57Q6P158 1386 aaKnown RBP16.37■□□□□ 0.21
LIG1-207ENST00000594759 KIF27Q86VH2 1401 aa16.37■□□□□ 0.21
LIG1-207ENST00000594759 RUSC2Q8N2Y8 1516 aa16.36■□□□□ 0.21
LIG1-207ENST00000594759 HSP90AA2PQ14568 343 aaPredicted RBP16.36■□□□□ 0.21
LIG1-207ENST00000594759 GSE1Q14687 1217 aa16.36■□□□□ 0.21
LIG1-207ENST00000594759 CEP164Q9UPV0 1460 aa16.35■□□□□ 0.21
LIG1-207ENST00000594759 CHIC2Q9UKJ5 165 aa16.34■□□□□ 0.21
LIG1-207ENST00000594759 BRPF3Q9ULD4 1205 aa16.34■□□□□ 0.21
LIG1-207ENST00000594759 ZNF326Q5BKZ1 582 aaKnown RBP16.33■□□□□ 0.2
LIG1-207ENST00000594759 SMARCA2P51531 1590 aa16.31■□□□□ 0.2
LIG1-207ENST00000594759 PNNQ9H307 717 aaKnown RBP16.31■□□□□ 0.2
LIG1-207ENST00000594759 CUX2O14529 1486 aa16.27■□□□□ 0.2
LIG1-207ENST00000594759 ARID4BQ4LE39 1312 aaPredicted RBP16.26■□□□□ 0.19
LIG1-207ENST00000594759 CHMP7Q8WUX9 453 aaPredicted RBP16.25■□□□□ 0.19
LIG1-207ENST00000594759 TRIM44Q96DX7 344 aaPredicted RBP16.25■□□□□ 0.19
LIG1-207ENST00000594759 ANP32BQ92688 251 aaKnown RBP16.25■□□□□ 0.19
LIG1-207ENST00000594759 VPS8Q8N3P4 1428 aa16.23■□□□□ 0.19
LIG1-207ENST00000594759 MTUS2Q5JR59 1369 aa16.23■□□□□ 0.19
LIG1-207ENST00000594759 L1TD1Q5T7N2 865 aaKnown RBP16.21■□□□□ 0.19
LIG1-207ENST00000594759 KANK4Q5T7N3 995 aaPredicted RBP16.21■□□□□ 0.19
LIG1-207ENST00000594759 CARMIL1Q5VZK9 1371 aa16.21■□□□□ 0.19
LIG1-207ENST00000594759 TCERG1O14776 1098 aaKnown RBP16.2■□□□□ 0.18
LIG1-207ENST00000594759 TMC1Q8TDI8 760 aa16.2■□□□□ 0.18
LIG1-207ENST00000594759 A0A0U1RQG5 324 aaPredicted RBP16.19■□□□□ 0.18
LIG1-207ENST00000594759 TDRD9Q8NDG6 1382 aaKnown RBP16.17■□□□□ 0.18
LIG1-207ENST00000594759 CCNB3Q8WWL7 1395 aa16.17■□□□□ 0.18
LIG1-207ENST00000594759 EIF4G2P78344 907 aaKnown RBP eCLIP16.17■□□□□ 0.181e-11■■■■■ 55.3
LIG1-207ENST00000594759 SLC24A1O60721 1099 aa16.15■□□□□ 0.18
LIG1-207ENST00000594759 RRP7BPQ9NSQ0 103 aa16.15■□□□□ 0.18
LIG1-207ENST00000594759 CADPSQ9ULU8 1353 aa16.15■□□□□ 0.18
LIG1-207ENST00000594759 RAPGEF2Q9Y4G8 1499 aa16.15■□□□□ 0.18
LIG1-207ENST00000594759 TNNT2P45379 298 aaPredicted RBP16.15■□□□□ 0.18
LIG1-207ENST00000594759 ZMYND15Q9H091 742 aa16.15■□□□□ 0.18
LIG1-207ENST00000594759 UPF2Q9HAU5 1272 aaKnown RBP16.14■□□□□ 0.17
LIG1-207ENST00000594759 BECN1Q14457 450 aa16.14■□□□□ 0.17
LIG1-207ENST00000594759 RAB3GAP2Q9H2M9 1393 aa16.13■□□□□ 0.17
LIG1-207ENST00000594759 PPP1R15AO75807 674 aaPredicted RBP16.12■□□□□ 0.17
LIG1-207ENST00000594759 FRAT1Q92837 279 aaPredicted RBP16.12■□□□□ 0.17
LIG1-207ENST00000594759 PDE4AP27815 886 aa16.12■□□□□ 0.17
LIG1-207ENST00000594759 FAM43AQ8N2R8 423 aa16.11■□□□□ 0.17
LIG1-207ENST00000594759 NFKBIBQ15653 356 aa16.09■□□□□ 0.17
LIG1-207ENST00000594759 SLC4A3P48751 1232 aa16.09■□□□□ 0.17
LIG1-207ENST00000594759 SETD5Q9C0A6 1442 aa16.03■□□□□ 0.16
LIG1-207ENST00000594759 ERCC6Q03468 1493 aa16.03■□□□□ 0.16
LIG1-207ENST00000594759 SLC4A1APQ9BWU0 796 aaKnown RBP16.02■□□□□ 0.16
LIG1-207ENST00000594759 NUDCQ9Y266 331 aa16.02■□□□□ 0.16
LIG1-207ENST00000594759 HSPA5P11021 654 aaKnown RBP16.01■□□□□ 0.15
LIG1-207ENST00000594759 RGS3P49796 1198 aa16.01■□□□□ 0.15
LIG1-207ENST00000594759 NCLP19338 710 aaKnown RBP16.01■□□□□ 0.15
LIG1-207ENST00000594759 CANXP27824 592 aaKnown RBP16■□□□□ 0.15
LIG1-207ENST00000594759 EIF4G1Q04637 1599 aaKnown RBP16■□□□□ 0.15
LIG1-207ENST00000594759 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16■□□□□ 0.152e-7■■■■□ 24.9
LIG1-207ENST00000594759 GOLGA6L3A6NEY3 463 aa16■□□□□ 0.15
LIG1-207ENST00000594759 C11orf95C9JLR9 678 aaPredicted RBP15.99■□□□□ 0.15
LIG1-207ENST00000594759 GZF1Q9H116 711 aaPredicted RBP15.99■□□□□ 0.15
LIG1-207ENST00000594759 RRP9O43818 475 aaKnown RBP15.99■□□□□ 0.15
LIG1-207ENST00000594759 ZBED9Q6R2W3 1325 aa15.98■□□□□ 0.15
LIG1-207ENST00000594759 BICRAQ9NZM4 1560 aa15.98■□□□□ 0.15
LIG1-207ENST00000594759 ARID3AQ99856 593 aa15.97■□□□□ 0.15
LIG1-207ENST00000594759 NCAPD3P42695 1498 aa15.97■□□□□ 0.15
LIG1-207ENST00000594759 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.96■□□□□ 0.15
LIG1-207ENST00000594759 SLKQ9H2G2 1235 aaPredicted RBP15.96■□□□□ 0.15
LIG1-207ENST00000594759 PDS5BQ9NTI5 1447 aa15.96■□□□□ 0.15
LIG1-207ENST00000594759 PLEKHG5O94827 1062 aa15.96■□□□□ 0.15
LIG1-207ENST00000594759 DNAJC5BQ9UF47 199 aa15.95■□□□□ 0.14
LIG1-207ENST00000594759 FANCD2Q9BXW9 1451 aa15.94■□□□□ 0.14
LIG1-207ENST00000594759 MS4A1P11836 297 aa15.94■□□□□ 0.14
LIG1-207ENST00000594759 TSPY4P0CV99 314 aa15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 95.7 ms