RNA–Protein interactions for RNA: ENST00000594759.5

LIG1-207, Transcript of DNA ligase 1, humanhuman

TSL 1 (best)

Gene LIG1, Length 4,102 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-207ENST00000594759 NISCHQ9Y2I1 1504 aa21.67■■□□□ 1.06
LIG1-207ENST00000594759 PELP1Q8IZL8 1130 aaKnown RBP20.74■□□□□ 0.91
LIG1-207ENST00000594759 DCAF8L2P0C7V8 631 aa20.72■□□□□ 0.91
LIG1-207ENST00000594759 MYT1Q01538 1121 aa20.3■□□□□ 0.84
LIG1-207ENST00000594759 HRCP23327 699 aa20.06■□□□□ 0.8
LIG1-207ENST00000594759 PCGF6Q9BYE7 350 aa19.99■□□□□ 0.79
LIG1-207ENST00000594759 SHROOM4Q9ULL8 1493 aa19.99■□□□□ 0.79
LIG1-207ENST00000594759 SUPT5HO00267 1087 aaKnown RBP19.94■□□□□ 0.78
LIG1-207ENST00000594759 PPARGC1BQ86YN6 1023 aaKnown RBP19.67■□□□□ 0.74
LIG1-207ENST00000594759 CENPBP07199 599 aaPredicted RBP19.36■□□□□ 0.69
LIG1-207ENST00000594759 ZEB1P37275 1124 aaPredicted RBP19.36■□□□□ 0.69
LIG1-207ENST00000594759 SCAF1Q9H7N4 1312 aaKnown RBP19.07■□□□□ 0.64
LIG1-207ENST00000594759 TRIM26Q12899 539 aaPredicted RBP19.01■□□□□ 0.63
LIG1-207ENST00000594759 EHMT2Q96KQ7 1210 aa18.95■□□□□ 0.62
LIG1-207ENST00000594759 GTF3C3Q9Y5Q9 886 aa18.93■□□□□ 0.62
LIG1-207ENST00000594759 CHIC1Q5VXU3 224 aa18.88■□□□□ 0.61
LIG1-207ENST00000594759 TTBK1Q5TCY1 1321 aaPredicted RBP18.87■□□□□ 0.61
LIG1-207ENST00000594759 ACIN1Q9UKV3 1341 aaKnown RBP18.84■□□□□ 0.61
LIG1-207ENST00000594759 YTHDC1Q96MU7 727 aaKnown RBP18.81■□□□□ 0.6
LIG1-207ENST00000594759 LOC105371045A0A1W2PR82 267 aa18.79■□□□□ 0.6
LIG1-207ENST00000594759 CCER1Q8TC90 406 aaPredicted RBP18.74■□□□□ 0.59
LIG1-207ENST00000594759 FAM9AQ8IZU1 332 aaPredicted RBP18.64■□□□□ 0.57
LIG1-207ENST00000594759 NEUROD1Q13562 356 aa18.61■□□□□ 0.57
LIG1-207ENST00000594759 DIEXFQ68CQ4 756 aaKnown RBP18.57■□□□□ 0.56
LIG1-207ENST00000594759 ERICH6Q7L0X2 663 aa18.5■□□□□ 0.55
LIG1-207ENST00000594759 ABCC9O60706 1549 aa18.35■□□□□ 0.53
LIG1-207ENST00000594759 MYO15BQ96JP2 1530 aa18.35■□□□□ 0.53
LIG1-207ENST00000594759 BCL11AQ9H165 835 aa18.33■□□□□ 0.52
LIG1-207ENST00000594759 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.32■□□□□ 0.52
LIG1-207ENST00000594759 TRIM41Q8WV44 630 aa18.32■□□□□ 0.52
LIG1-207ENST00000594759 DCAF1Q9Y4B6 1507 aa18.24■□□□□ 0.51
LIG1-207ENST00000594759 NEFLP07196 543 aa18.12■□□□□ 0.49
LIG1-207ENST00000594759 ANP32EQ9BTT0 268 aa18.12■□□□□ 0.49
LIG1-207ENST00000594759 RANGAP1P46060 587 aaPredicted RBP18.07■□□□□ 0.48
LIG1-207ENST00000594759 PABPN1Q86U42 306 aaKnown RBP eCLIP18.04■□□□□ 0.482e-6■■■■□ 25.6
LIG1-207ENST00000594759 ZCCHC6Q5VYS8 1495 aaKnown RBP18.03■□□□□ 0.48
LIG1-207ENST00000594759 ZNF316A6NFI3 1004 aaPredicted RBP17.99■□□□□ 0.47
LIG1-207ENST00000594759 BCANQ96GW7 911 aa17.91■□□□□ 0.46
LIG1-207ENST00000594759 UBTFP17480 764 aaKnown RBP17.86■□□□□ 0.45
LIG1-207ENST00000594759 CCDC180Q9P1Z9 1646 aa17.86■□□□□ 0.45
LIG1-207ENST00000594759 CLSPNQ9HAW4 1339 aa17.83■□□□□ 0.44
LIG1-207ENST00000594759 APLP2Q06481 763 aa17.81■□□□□ 0.44
LIG1-207ENST00000594759 CSRNP3Q8WYN3 585 aa17.78■□□□□ 0.44
LIG1-207ENST00000594759 MIER1Q8N108 512 aa17.74■□□□□ 0.43
LIG1-207ENST00000594759 SCRIBQ14160 1630 aa17.72■□□□□ 0.43
LIG1-207ENST00000594759 HNRNPUL2Q1KMD3 747 aaKnown RBP17.71■□□□□ 0.43
LIG1-207ENST00000594759 RTL5Q5HYW3 569 aaPredicted RBP17.66■□□□□ 0.42
LIG1-207ENST00000594759 PRKCSHP14314 528 aaPredicted RBP17.66■□□□□ 0.42
LIG1-207ENST00000594759 MYT1LQ9UL68 1186 aa17.59■□□□□ 0.41
LIG1-207ENST00000594759 SUPT16HQ9Y5B9 1047 aaKnown RBP17.59■□□□□ 0.41
LIG1-207ENST00000594759 ATP1B4Q9UN42 357 aaPredicted RBP17.58■□□□□ 0.4
LIG1-207ENST00000594759 FKBP8Q14318 412 aa17.57■□□□□ 0.4
LIG1-207ENST00000594759 CDK11AQ9UQ88 783 aaPredicted RBP17.55■□□□□ 0.4
LIG1-207ENST00000594759 TSHZ2Q9NRE2 1034 aa17.54■□□□□ 0.4
LIG1-207ENST00000594759 EIF5BO60841 1220 aaKnown RBP17.47■□□□□ 0.39
LIG1-207ENST00000594759 ITGAEP38570 1179 aa17.36■□□□□ 0.37
LIG1-207ENST00000594759 NBR1Q14596 966 aa17.36■□□□□ 0.37
LIG1-207ENST00000594759 RBM19Q9Y4C8 960 aaKnown RBP17.35■□□□□ 0.37
LIG1-207ENST00000594759 RSF1Q96T23 1441 aaPredicted RBP17.31■□□□□ 0.36
LIG1-207ENST00000594759 DEKP35659 375 aaKnown RBP17.29■□□□□ 0.36
LIG1-207ENST00000594759 CECR2Q9BXF3 1484 aa17.19■□□□□ 0.34
LIG1-207ENST00000594759 DAXXQ9UER7 740 aaPredicted RBP17.19■□□□□ 0.34
LIG1-207ENST00000594759 RTN4Q9NQC3 1192 aaKnown RBP17.19■□□□□ 0.34
LIG1-207ENST00000594759 ANP32AP39687 249 aaKnown RBP17.17■□□□□ 0.34
LIG1-207ENST00000594759 RB1CC1Q8TDY2 1594 aa17.14■□□□□ 0.34
LIG1-207ENST00000594759 GLIPR1L2Q4G1C9 344 aa17.14■□□□□ 0.33
LIG1-207ENST00000594759 ANP32CO43423 234 aa17.13■□□□□ 0.33
LIG1-207ENST00000594759 NACADO15069 1562 aa17.13■□□□□ 0.33
LIG1-207ENST00000594759 TRIM52Q96A61 297 aa17.12■□□□□ 0.33
LIG1-207ENST00000594759 ANO8Q9HCE9 1232 aaPredicted RBP17.1■□□□□ 0.33
LIG1-207ENST00000594759 CCDC136Q96JN2 1154 aa17.09■□□□□ 0.33
LIG1-207ENST00000594759 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.06■□□□□ 0.32
LIG1-207ENST00000594759 ZBTB47Q9UFB7 747 aaPredicted RBP17.05■□□□□ 0.32
LIG1-207ENST00000594759 IRX6P78412 446 aaPredicted RBP17.02■□□□□ 0.32
LIG1-207ENST00000594759 DDX10Q13206 875 aaKnown RBP17.02■□□□□ 0.31
LIG1-207ENST00000594759 ERICH6BQ5W0A0 696 aa17.01■□□□□ 0.31
LIG1-207ENST00000594759 NOP58Q9Y2X3 529 aaKnown RBP16.97■□□□□ 0.31
LIG1-207ENST00000594759 NPM2Q86SE8 214 aaKnown RBP16.96■□□□□ 0.31
LIG1-207ENST00000594759 P3H3Q8IVL6 736 aa16.94■□□□□ 0.3
LIG1-207ENST00000594759 HNRNPUQ00839 825 aaKnown RBP eCLIP16.94■□□□□ 0.3
LIG1-207ENST00000594759 MROH2BQ7Z745 1585 aa16.93■□□□□ 0.3
LIG1-207ENST00000594759 CNGB1Q14028 1251 aaPredicted RBP16.88■□□□□ 0.29
LIG1-207ENST00000594759 SALL2Q9Y467 1007 aaPredicted RBP16.88■□□□□ 0.29
LIG1-207ENST00000594759 FANCIQ9NVI1 1328 aa16.84■□□□□ 0.29
LIG1-207ENST00000594759 FAM50AQ14320 339 aaKnown RBP16.83■□□□□ 0.28
LIG1-207ENST00000594759 CEP162Q5TB80 1403 aa16.81■□□□□ 0.28
LIG1-207ENST00000594759 NEFMP07197 916 aa16.81■□□□□ 0.28
LIG1-207ENST00000594759 BAZ1AQ9NRL2 1556 aaPredicted RBP16.8■□□□□ 0.28
LIG1-207ENST00000594759 ARID3CA6NKF2 412 aa16.79■□□□□ 0.28
LIG1-207ENST00000594759 HIRIP3Q9BW71 556 aaPredicted RBP16.78■□□□□ 0.28
LIG1-207ENST00000594759 KCNH8Q96L42 1107 aa16.78■□□□□ 0.28
LIG1-207ENST00000594759 FBLN2P98095 1184 aa16.77■□□□□ 0.28
LIG1-207ENST00000594759 PPP4R2Q9NY27 417 aa16.76■□□□□ 0.27
LIG1-207ENST00000594759 BAZ1BQ9UIG0 1483 aaKnown RBP16.73■□□□□ 0.27
LIG1-207ENST00000594759 MSH5O43196 834 aa16.71■□□□□ 0.26
LIG1-207ENST00000594759 LAS1LQ9Y4W2 734 aaKnown RBP16.71■□□□□ 0.26
LIG1-207ENST00000594759 POLR3GLQ9BT43 218 aa16.7■□□□□ 0.26
LIG1-207ENST00000594759 WIZO95785 1651 aa16.7■□□□□ 0.26
LIG1-207ENST00000594759 B4GALNT3Q6L9W6 998 aa16.69■□□□□ 0.26
LIG1-207ENST00000594759 WRNQ14191 1432 aaPredicted RBP eCLIP16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms