RNA–Protein interactions for RNA: ENST00000587988.5

SMARCA4-213, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 2

Gene SMARCA4, Length 552 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-213ENST00000587988 DNAJC5Q9H3Z4 198 aa17.59■□□□□ 0.41
SMARCA4-213ENST00000587988 GOLGA3Q08378 1498 aa17.56■□□□□ 0.4
SMARCA4-213ENST00000587988 CTTNBP2Q8WZ74 1663 aa17.55■□□□□ 0.4
SMARCA4-213ENST00000587988 JPH4Q96JJ6 628 aa17.54■□□□□ 0.4
SMARCA4-213ENST00000587988 UBTFP17480 764 aaKnown RBP17.53■□□□□ 0.4
SMARCA4-213ENST00000587988 IQGAP2Q13576 1575 aa17.53■□□□□ 0.4
SMARCA4-213ENST00000587988 SHROOM2Q13796 1616 aa17.52■□□□□ 0.4
SMARCA4-213ENST00000587988 LOC105371045A0A1W2PR82 267 aa17.5■□□□□ 0.39
SMARCA4-213ENST00000587988 ERCC6L2Q5T890 1561 aa17.49■□□□□ 0.39
SMARCA4-213ENST00000587988 PRG4Q92954 1404 aaPredicted RBP17.47■□□□□ 0.39
SMARCA4-213ENST00000587988 ARHGEF11O15085 1522 aa17.47■□□□□ 0.39
SMARCA4-213ENST00000587988 RIMBP3CA6NJZ7 1639 aa17.46■□□□□ 0.39
SMARCA4-213ENST00000587988 RIMBP3BA6NNM3 1639 aa17.46■□□□□ 0.39
SMARCA4-213ENST00000587988 RIMBP3Q9UFD9 1639 aa17.46■□□□□ 0.39
SMARCA4-213ENST00000587988 UGGT2Q9NYU1 1516 aa17.45■□□□□ 0.38
SMARCA4-213ENST00000587988 RANGAP1P46060 587 aaPredicted RBP17.44■□□□□ 0.38
SMARCA4-213ENST00000587988 DISP1Q96F81 1524 aa17.41■□□□□ 0.38
SMARCA4-213ENST00000587988 TNIKQ9UKE5 1360 aa17.4■□□□□ 0.38
SMARCA4-213ENST00000587988 ARAP1Q96P48 1450 aa17.37■□□□□ 0.37
SMARCA4-213ENST00000587988 KIAA0556O60303 1618 aa17.37■□□□□ 0.37
SMARCA4-213ENST00000587988 CARMIL2Q6F5E8 1435 aa17.37■□□□□ 0.37
SMARCA4-213ENST00000587988 P3H3Q8IVL6 736 aa17.36■□□□□ 0.37
SMARCA4-213ENST00000587988 SAMD9Q5K651 1589 aa17.34■□□□□ 0.37
SMARCA4-213ENST00000587988 TTBK1Q5TCY1 1321 aaPredicted RBP17.33■□□□□ 0.36
SMARCA4-213ENST00000587988 CYB5RLQ6IPT4 315 aa17.33■□□□□ 0.36
SMARCA4-213ENST00000587988 ARHGAP35Q9NRY4 1499 aa17.31■□□□□ 0.36
SMARCA4-213ENST00000587988 EFCAB5A4FU69 1503 aa17.29■□□□□ 0.36
SMARCA4-213ENST00000587988 PTPRGP23470 1445 aa17.29■□□□□ 0.36
SMARCA4-213ENST00000587988 FHOD3Q2V2M9 1422 aa17.28■□□□□ 0.36
SMARCA4-213ENST00000587988 CLIP1P30622 1438 aa17.27■□□□□ 0.35
SMARCA4-213ENST00000587988 CEP162Q5TB80 1403 aa17.27■□□□□ 0.35
SMARCA4-213ENST00000587988 PLB1Q6P1J6 1458 aa17.19■□□□□ 0.34
SMARCA4-213ENST00000587988 UACAQ9BZF9 1416 aa17.18■□□□□ 0.34
SMARCA4-213ENST00000587988 ABCA8O94911 1581 aa17.17■□□□□ 0.34
SMARCA4-213ENST00000587988 ADCY10Q96PN6 1610 aa17.17■□□□□ 0.34
SMARCA4-213ENST00000587988 ABCC2Q92887 1545 aa17.14■□□□□ 0.33
SMARCA4-213ENST00000587988 FMN1Q68DA7 1419 aa17.13■□□□□ 0.33
SMARCA4-213ENST00000587988 UHRF1BP1LA0JNW5 1464 aa17.13■□□□□ 0.33
SMARCA4-213ENST00000587988 RAPGEF6Q8TEU7 1601 aa17.13■□□□□ 0.33
SMARCA4-213ENST00000587988 ARID3CA6NKF2 412 aa17.09■□□□□ 0.33
SMARCA4-213ENST00000587988 NUP153P49790 1475 aaKnown RBP17.07■□□□□ 0.32
SMARCA4-213ENST00000587988 PCF11O94913 1555 aaKnown RBP17.06■□□□□ 0.32
SMARCA4-213ENST00000587988 KDM5BQ9UGL1 1544 aa17.06■□□□□ 0.32
SMARCA4-213ENST00000587988 NPM1P06748 294 aaKnown RBP eCLIP17.06■□□□□ 0.32
SMARCA4-213ENST00000587988 ATP1B4Q9UN42 357 aaPredicted RBP17.06■□□□□ 0.32
SMARCA4-213ENST00000587988 CASKIN1Q8WXD9 1431 aa17.05■□□□□ 0.32
SMARCA4-213ENST00000587988 ATP10BO94823 1461 aa17.05■□□□□ 0.32
SMARCA4-213ENST00000587988 ZCCHC11Q5TAX3 1644 aaKnown RBP17.04■□□□□ 0.32
SMARCA4-213ENST00000587988 VPS8Q8N3P4 1428 aa17.03■□□□□ 0.32
SMARCA4-213ENST00000587988 HECW1Q76N89 1606 aa17.03■□□□□ 0.32
SMARCA4-213ENST00000587988 LRRIQ1Q96JM4 1722 aa17.02■□□□□ 0.32
SMARCA4-213ENST00000587988 FYCO1Q9BQS8 1478 aa17■□□□□ 0.31
SMARCA4-213ENST00000587988 EPRSP07814 1512 aaKnown RBP17■□□□□ 0.31
SMARCA4-213ENST00000587988 CDK13Q14004 1512 aaKnown RBP17■□□□□ 0.31
SMARCA4-213ENST00000587988 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.99■□□□□ 0.31
SMARCA4-213ENST00000587988 HNRNPUL2Q1KMD3 747 aaKnown RBP16.99■□□□□ 0.31
SMARCA4-213ENST00000587988 MAPKBP1O60336 1514 aa16.97■□□□□ 0.31
SMARCA4-213ENST00000587988 ASXL2Q76L83 1435 aa16.96■□□□□ 0.31
SMARCA4-213ENST00000587988 CCDC18Q5T9S5 1454 aa16.93■□□□□ 0.3
SMARCA4-213ENST00000587988 WDR7Q9Y4E6 1490 aa16.92■□□□□ 0.3
SMARCA4-213ENST00000587988 PLEKHD1A6NEE1 506 aa16.9■□□□□ 0.3
SMARCA4-213ENST00000587988 KCNH8Q96L42 1107 aa16.89■□□□□ 0.29
SMARCA4-213ENST00000587988 ABCC10Q5T3U5 1492 aa16.88■□□□□ 0.29
SMARCA4-213ENST00000587988 MAGI3Q5TCQ9 1506 aa16.88■□□□□ 0.29
SMARCA4-213ENST00000587988 TRHP20396 242 aaPredicted RBP16.87■□□□□ 0.29
SMARCA4-213ENST00000587988 CDK11AQ9UQ88 783 aaPredicted RBP16.87■□□□□ 0.29
SMARCA4-213ENST00000587988 DIP2BQ9P265 1576 aa16.86■□□□□ 0.29
SMARCA4-213ENST00000587988 FAM69CQ0P6D2 419 aa16.86■□□□□ 0.29
SMARCA4-213ENST00000587988 TIAM1Q13009 1591 aa16.85■□□□□ 0.29
SMARCA4-213ENST00000587988 CFAP43Q8NDM7 1665 aa16.85■□□□□ 0.29
SMARCA4-213ENST00000587988 KIF13AQ9H1H9 1805 aa16.85■□□□□ 0.29
SMARCA4-213ENST00000587988 TROQ12816 1431 aaPredicted RBP16.84■□□□□ 0.29
SMARCA4-213ENST00000587988 MAP3K1Q13233 1512 aa16.82■□□□□ 0.28
SMARCA4-213ENST00000587988 KANK4Q5T7N3 995 aaPredicted RBP16.82■□□□□ 0.28
SMARCA4-213ENST00000587988 GLI2P10070 1586 aa16.81■□□□□ 0.28
SMARCA4-213ENST00000587988 APLP2Q06481 763 aa16.81■□□□□ 0.28
SMARCA4-213ENST00000587988 KIF14Q15058 1648 aa16.81■□□□□ 0.28
SMARCA4-213ENST00000587988 MTUS2Q5JR59 1369 aa16.8■□□□□ 0.28
SMARCA4-213ENST00000587988 LRRC9Q6ZRR7 1453 aa16.79■□□□□ 0.28
SMARCA4-213ENST00000587988 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.78■□□□□ 0.28
SMARCA4-213ENST00000587988 EHBP1L1Q8N3D4 1523 aa16.77■□□□□ 0.28
SMARCA4-213ENST00000587988 ABCA9Q8IUA7 1624 aa16.77■□□□□ 0.27
SMARCA4-213ENST00000587988 MAP3K4Q9Y6R4 1608 aa16.76■□□□□ 0.27
SMARCA4-213ENST00000587988 TTC37Q6PGP7 1564 aa16.76■□□□□ 0.27
SMARCA4-213ENST00000587988 TSPOAP1O95153 1857 aa16.74■□□□□ 0.27
SMARCA4-213ENST00000587988 CD109Q6YHK3 1445 aa16.74■□□□□ 0.27
SMARCA4-213ENST00000587988 PPARGC1BQ86YN6 1023 aaKnown RBP16.73■□□□□ 0.27
SMARCA4-213ENST00000587988 PPRC1Q5VV67 1664 aaKnown RBP16.72■□□□□ 0.27
SMARCA4-213ENST00000587988 SUPT6HQ7KZ85 1726 aaKnown RBP16.7■□□□□ 0.26
SMARCA4-213ENST00000587988 NCOA2Q15596 1464 aa16.7■□□□□ 0.26
SMARCA4-213ENST00000587988 PLCH2O75038 1416 aa16.67■□□□□ 0.26
SMARCA4-213ENST00000587988 CDC42BPAQ5VT25 1732 aa16.67■□□□□ 0.26
SMARCA4-213ENST00000587988 MYO5CQ9NQX4 1742 aa16.67■□□□□ 0.26
SMARCA4-213ENST00000587988 GPATCH8Q9UKJ3 1502 aaKnown RBP16.66■□□□□ 0.26
SMARCA4-213ENST00000587988 CCNB3Q8WWL7 1395 aa16.65■□□□□ 0.26
SMARCA4-213ENST00000587988 CDC42BPBQ9Y5S2 1711 aa16.65■□□□□ 0.26
SMARCA4-213ENST00000587988 PREX2Q70Z35 1606 aa16.63■□□□□ 0.25
SMARCA4-213ENST00000587988 PHLDB1Q86UU1 1377 aa16.63■□□□□ 0.25
SMARCA4-213ENST00000587988 TEX14Q8IWB6 1497 aa16.62■□□□□ 0.25
SMARCA4-213ENST00000587988 ARHGAP5Q13017 1502 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms