RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 ABCA5Q8WWZ7 1642 aa30.99■■■□□ 2.55
VPS53-218ENST00000575207 ABCA10Q8WWZ4 1543 aa30.94■■■□□ 2.54
VPS53-218ENST00000575207 PRG4Q92954 1404 aaPredicted RBP30.92■■■□□ 2.54
VPS53-218ENST00000575207 ADAMTS12P58397 1594 aa30.87■■■□□ 2.53
VPS53-218ENST00000575207 TSPOAP1O95153 1857 aa30.87■■■□□ 2.53
VPS53-218ENST00000575207 JPH4Q96JJ6 628 aa30.81■■■□□ 2.52
VPS53-218ENST00000575207 FHAD1B1AJZ9 1412 aa30.77■■■□□ 2.52
VPS53-218ENST00000575207 ADCY10Q96PN6 1610 aa30.76■■■□□ 2.52
VPS53-218ENST00000575207 LMTK3Q96Q04 1460 aa30.74■■■□□ 2.51
VPS53-218ENST00000575207 COL17A1Q9UMD9 1497 aaPredicted RBP30.56■■■□□ 2.48
VPS53-218ENST00000575207 PPRC1Q5VV67 1664 aaKnown RBP30.55■■■□□ 2.48
VPS53-218ENST00000575207 SOCS7O14512 581 aa30.55■■■□□ 2.48
VPS53-218ENST00000575207 ERICH3Q5RHP9 1530 aa30.51■■■□□ 2.47
VPS53-218ENST00000575207 WRNQ14191 1432 aaPredicted RBP eCLIP30.49■■■□□ 2.47
VPS53-218ENST00000575207 GLI2P10070 1586 aa30.48■■■□□ 2.47
VPS53-218ENST00000575207 RUSC2Q8N2Y8 1516 aa30.47■■■□□ 2.47
VPS53-218ENST00000575207 TOP2BQ02880 1626 aa30.44■■■□□ 2.46
VPS53-218ENST00000575207 ILDR2Q71H61 639 aa30.42■■■□□ 2.46
VPS53-218ENST00000575207 PLB1Q6P1J6 1458 aa30.37■■■□□ 2.45
VPS53-218ENST00000575207 ASXL2Q76L83 1435 aa30.35■■■□□ 2.45
VPS53-218ENST00000575207 ABCC2Q92887 1545 aa30.3■■■□□ 2.44
VPS53-218ENST00000575207 TEX14Q8IWB6 1497 aa30.26■■■□□ 2.44
VPS53-218ENST00000575207 PTPRGP23470 1445 aa30.24■■■□□ 2.43
VPS53-218ENST00000575207 DISP3Q9P2K9 1392 aa30.23■■■□□ 2.43
VPS53-218ENST00000575207 KIAA0586Q9BVV6 1533 aa30.22■■■□□ 2.43
VPS53-218ENST00000575207 MAP3K4Q9Y6R4 1608 aa30.21■■■□□ 2.43
VPS53-218ENST00000575207 EPRSP07814 1512 aaKnown RBP30.17■■■□□ 2.42
VPS53-218ENST00000575207 BIVM-ERCC5R4GMW8 1640 aa30.11■■■□□ 2.41
VPS53-218ENST00000575207 UHRF1BP1LA0JNW5 1464 aa30.08■■■□□ 2.41
VPS53-218ENST00000575207 CUL7Q14999 1698 aa30.05■■■□□ 2.4
VPS53-218ENST00000575207 TNIKQ9UKE5 1360 aa30.04■■■□□ 2.4
VPS53-218ENST00000575207 PTPRMP28827 1452 aa30.03■■■□□ 2.4
VPS53-218ENST00000575207 TTBK1Q5TCY1 1321 aaPredicted RBP30■■■□□ 2.39
VPS53-218ENST00000575207 CERKQ8TCT0 537 aa30■■■□□ 2.39
VPS53-218ENST00000575207 PCF11O94913 1555 aaKnown RBP29.98■■■□□ 2.39
VPS53-218ENST00000575207 KIF21BO75037 1637 aa29.96■■■□□ 2.39
VPS53-218ENST00000575207 KDM5BQ9UGL1 1544 aa29.96■■■□□ 2.39
VPS53-218ENST00000575207 UACAQ9BZF9 1416 aa29.96■■■□□ 2.39
VPS53-218ENST00000575207 CARMIL2Q6F5E8 1435 aa29.94■■■□□ 2.38
VPS53-218ENST00000575207 ADAMTSL3P82987 1691 aa29.9■■■□□ 2.38
VPS53-218ENST00000575207 MAGI3Q5TCQ9 1506 aa29.86■■■□□ 2.37
VPS53-218ENST00000575207 SPATA31D1Q6ZQQ2 1576 aa29.81■■■□□ 2.36
VPS53-218ENST00000575207 CD109Q6YHK3 1445 aa29.79■■■□□ 2.36
VPS53-218ENST00000575207 ZCCHC11Q5TAX3 1644 aaKnown RBP29.78■■■□□ 2.36
VPS53-218ENST00000575207 WDR7Q9Y4E6 1490 aa29.78■■■□□ 2.36
VPS53-218ENST00000575207 IGF1RP08069 1367 aa29.77■■■□□ 2.36
VPS53-218ENST00000575207 HSPA2P54652 639 aa29.71■■■□□ 2.35
VPS53-218ENST00000575207 CFAP43Q8NDM7 1665 aa29.69■■■□□ 2.34
VPS53-218ENST00000575207 ARAP3Q8WWN8 1544 aa29.69■■■□□ 2.34
VPS53-218ENST00000575207 DISP1Q96F81 1524 aa29.66■■■□□ 2.34
VPS53-218ENST00000575207 MADDQ8WXG6 1647 aa29.63■■■□□ 2.33
VPS53-218ENST00000575207 BCORL1Q5H9F3 1711 aa29.62■■■□□ 2.33
VPS53-218ENST00000575207 IQGAP2Q13576 1575 aa29.61■■■□□ 2.33
VPS53-218ENST00000575207 KCNH8Q96L42 1107 aa29.55■■■□□ 2.32
VPS53-218ENST00000575207 KIF27Q86VH2 1401 aa29.52■■■□□ 2.32
VPS53-218ENST00000575207 CARMIL1Q5VZK9 1371 aa29.5■■■□□ 2.31
VPS53-218ENST00000575207 ARID4BQ4LE39 1312 aaPredicted RBP29.48■■■□□ 2.31
VPS53-218ENST00000575207 PHLDB1Q86UU1 1377 aa29.48■■■□□ 2.31
VPS53-218ENST00000575207 RIMS1Q86UR5 1692 aaKnown RBP29.44■■■□□ 2.3
VPS53-218ENST00000575207 UGGT2Q9NYU1 1516 aa29.42■■■□□ 2.3
VPS53-218ENST00000575207 RAPGEF3O95398 923 aa29.42■■■□□ 2.3
VPS53-218ENST00000575207 KIAA0556O60303 1618 aa29.38■■■□□ 2.29
VPS53-218ENST00000575207 DMRT2Q9Y5R5 561 aa29.32■■■□□ 2.28
VPS53-218ENST00000575207 YEATS2Q9ULM3 1422 aa29.29■■■□□ 2.28
VPS53-218ENST00000575207 PLPPR3Q6T4P5 718 aa29.28■■■□□ 2.28
VPS53-218ENST00000575207 FRMPD1Q5SYB0 1578 aa29.26■■■□□ 2.28
VPS53-218ENST00000575207 NEO1Q92859 1461 aa29.25■■■□□ 2.27
VPS53-218ENST00000575207 ABCA8O94911 1581 aa29.24■■■□□ 2.27
VPS53-218ENST00000575207 ARHGEF40Q8TER5 1519 aa29.2■■■□□ 2.27
VPS53-218ENST00000575207 POGZQ7Z3K3 1410 aa29.2■■■□□ 2.26
VPS53-218ENST00000575207 ABCA9Q8IUA7 1624 aa29.19■■■□□ 2.26
VPS53-218ENST00000575207 STRCQ7RTU9 1775 aa29.18■■■□□ 2.26
VPS53-218ENST00000575207 IQSEC2Q5JU85 1478 aa29.16■■■□□ 2.26
VPS53-218ENST00000575207 FANCAO15360 1455 aa29.13■■■□□ 2.25
VPS53-218ENST00000575207 TTC37Q6PGP7 1564 aa29.11■■■□□ 2.25
VPS53-218ENST00000575207 PREX1Q8TCU6 1659 aa29.09■■■□□ 2.25
VPS53-218ENST00000575207 PTPRTO14522 1441 aa29.09■■■□□ 2.25
VPS53-218ENST00000575207 LTBP4Q8N2S1 1624 aa29.09■■■□□ 2.25
VPS53-218ENST00000575207 AKNAQ7Z591 1439 aa29.05■■■□□ 2.24
VPS53-218ENST00000575207 RAPGEF2Q9Y4G8 1499 aa29.03■■■□□ 2.24
VPS53-218ENST00000575207 FHOD3Q2V2M9 1422 aa29.03■■■□□ 2.24
VPS53-218ENST00000575207 ATP10BO94823 1461 aa29.02■■■□□ 2.24
VPS53-218ENST00000575207 GOLGA3Q08378 1498 aa29.02■■■□□ 2.24
VPS53-218ENST00000575207 SIGLEC1Q9BZZ2 1709 aa29.01■■■□□ 2.23
VPS53-218ENST00000575207 SUPT5HO00267 1087 aaKnown RBP29.01■■■□□ 2.23
VPS53-218ENST00000575207 DENND4BO75064 1496 aaPredicted RBP29.01■■■□□ 2.23
VPS53-218ENST00000575207 FER1L4A9Z1Z3 1794 aa29.01■■■□□ 2.23
VPS53-218ENST00000575207 RICTORQ6R327 1708 aa28.99■■■□□ 2.23
VPS53-218ENST00000575207 MLECQ14165 292 aa28.97■■■□□ 2.23
VPS53-218ENST00000575207 UHRF1BP1Q6BDS2 1440 aa28.93■■■□□ 2.22
VPS53-218ENST00000575207 ARID3CA6NKF2 412 aa28.92■■■□□ 2.22
VPS53-218ENST00000575207 ZMYM4Q5VZL5 1548 aa28.92■■■□□ 2.22
VPS53-218ENST00000575207 ARHGEF12Q9NZN5 1544 aa28.91■■■□□ 2.22
VPS53-218ENST00000575207 CEBPAP49715 358 aaPredicted RBP28.91■■■□□ 2.22
VPS53-218ENST00000575207 ZFYVE16Q7Z3T8 1539 aa28.9■■■□□ 2.22
VPS53-218ENST00000575207 EFCAB5A4FU69 1503 aa28.89■■■□□ 2.22
VPS53-218ENST00000575207 SETD1BQ9UPS6 1966 aaKnown RBP28.89■■■□□ 2.22
VPS53-218ENST00000575207 MAGI2Q86UL8 1455 aa28.89■■■□□ 2.22
VPS53-218ENST00000575207 UBAP1LF5GYI3 381 aa28.84■■■□□ 2.21
VPS53-218ENST00000575207 MED1Q15648 1581 aaPredicted RBP28.84■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 89.6 ms