RNA–Protein interactions for RNA: ENST00000555573.5

KTN1-223, Transcript of kinectin 1, human

TSL 2 BASIC

Gene KTN1, Length 1,712 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
KTN1-223	ENST00000555573	FAM212A	Q96EL1	285 aa		11.43	□□□□□ -0.58
KTN1-223	ENST00000555573	RNF25	Q96BH1	459 aa	Predicted RBP	11.41	□□□□□ -0.58
KTN1-223	ENST00000555573	CHADL	Q6NUI6	762 aa		11.4	□□□□□ -0.58
KTN1-223	ENST00000555573	HAP1	P54257	671 aa	Predicted RBP	11.4	□□□□□ -0.58
KTN1-223	ENST00000555573	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	11.39	□□□□□ -0.59
KTN1-223	ENST00000555573	CHGA	P10645	457 aa	Known RBP	11.38	□□□□□ -0.59
KTN1-223	ENST00000555573	LHX8	Q68G74	356 aa		11.35	□□□□□ -0.59
KTN1-223	ENST00000555573	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	11.33	□□□□□ -0.6
KTN1-223	ENST00000555573	RIOK3	O14730	519 aa	Known RBP	11.32	□□□□□ -0.6
KTN1-223	ENST00000555573	CFAP44	Q96MT7	982 aa		11.32	□□□□□ -0.6
KTN1-223	ENST00000555573	HAX1	O00165	279 aa		11.31	□□□□□ -0.6
KTN1-223	ENST00000555573	FARP1	Q9Y4F1	1045 aa	Predicted RBP	11.31	□□□□□ -0.6
KTN1-223	ENST00000555573	HS6ST3	Q8IZP7	471 aa		11.3	□□□□□ -0.6
KTN1-223	ENST00000555573	CHRM1	P11229	460 aa	Predicted RBP	11.29	□□□□□ -0.6
KTN1-223	ENST00000555573	PRKAR2A	P13861	404 aa	Known RBP	11.29	□□□□□ -0.6
KTN1-223	ENST00000555573	PYGB	P11216	843 aa		11.29	□□□□□ -0.6
KTN1-223	ENST00000555573	FXR2	P51116	673 aa	Known RBP eCLIP	11.28	□□□□□ -0.6	8e-8	■■■□□ 15.5
KTN1-223	ENST00000555573	SPRYD3	Q8NCJ5	442 aa		11.26	□□□□□ -0.61
KTN1-223	ENST00000555573	TSPYL2	Q9H2G4	693 aa	Predicted RBP	11.25	□□□□□ -0.61
KTN1-223	ENST00000555573	TAOK2	Q9UL54	1235 aa		11.23	□□□□□ -0.61
KTN1-223	ENST00000555573	VGF	O15240	615 aa	Predicted RBP	11.22	□□□□□ -0.61
KTN1-223	ENST00000555573	VSIG10	Q8N0Z9	540 aa		11.21	□□□□□ -0.62
KTN1-223	ENST00000555573	DNAJC5	Q9H3Z4	198 aa		11.21	□□□□□ -0.62
KTN1-223	ENST00000555573	PIP4P2	Q8N4L2	257 aa		11.2	□□□□□ -0.62
KTN1-223	ENST00000555573	STK25	O00506	426 aa		11.19	□□□□□ -0.62
KTN1-223	ENST00000555573	NKX1-1	Q15270	411 aa	Predicted RBP	11.18	□□□□□ -0.62
KTN1-223	ENST00000555573	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	11.17	□□□□□ -0.62
KTN1-223	ENST00000555573	ZFP91	Q96JP5	570 aa	Predicted RBP	11.17	□□□□□ -0.62
KTN1-223	ENST00000555573	SGIP1	Q9BQI5	828 aa		11.16	□□□□□ -0.62
KTN1-223	ENST00000555573	TSHZ2	Q9NRE2	1034 aa		11.16	□□□□□ -0.62
KTN1-223	ENST00000555573	KDM2A	Q9Y2K7	1162 aa		11.15	□□□□□ -0.62
KTN1-223	ENST00000555573	BCL11B	Q9C0K0	894 aa	Predicted RBP	11.14	□□□□□ -0.63
KTN1-223	ENST00000555573	CCDC61	Q9Y6R9	512 aa		11.14	□□□□□ -0.63
KTN1-223	ENST00000555573	STK24	Q9Y6E0	443 aa		11.13	□□□□□ -0.63
KTN1-223	ENST00000555573	ZNF467	Q7Z7K2	595 aa	Predicted RBP	11.09	□□□□□ -0.63
KTN1-223	ENST00000555573	PCDHB8	Q9UN66	801 aa		11.09	□□□□□ -0.63
KTN1-223	ENST00000555573	PCDHB13	Q9Y5F0	798 aa		11.09	□□□□□ -0.63
KTN1-223	ENST00000555573	GTPBP6	O43824	516 aa	Predicted RBP	11.09	□□□□□ -0.63
KTN1-223	ENST00000555573	PAK3	O75914	559 aa	Predicted RBP	11.07	□□□□□ -0.64
KTN1-223	ENST00000555573	PDAP1	Q13442	181 aa	Known RBP	11.04	□□□□□ -0.64
KTN1-223	ENST00000555573	ZNF579	Q8NAF0	562 aa	Known RBP	11.03	□□□□□ -0.64
KTN1-223	ENST00000555573	MAP3K13	O43283	966 aa		11.01	□□□□□ -0.65
KTN1-223	ENST00000555573	KIF12	Q96FN5	646 aa		11.01	□□□□□ -0.65
KTN1-223	ENST00000555573	IFNL1	Q8IU54	200 aa		11	□□□□□ -0.65
KTN1-223	ENST00000555573	CD44	P16070	742 aa	Known RBP	10.99	□□□□□ -0.65
KTN1-223	ENST00000555573	PSEN1	P49768	467 aa		10.99	□□□□□ -0.65
KTN1-223	ENST00000555573	BCAN	Q96GW7	911 aa		10.99	□□□□□ -0.65
KTN1-223	ENST00000555573	ZRANB1	Q9UGI0	708 aa		10.99	□□□□□ -0.65
KTN1-223	ENST00000555573	RYDEN	Q9NUL5	291 aa	Known RBP	10.95	□□□□□ -0.66
KTN1-223	ENST00000555573	PHF12	Q96QT6	1004 aa		10.95	□□□□□ -0.66
KTN1-223	ENST00000555573	PCDH10	Q9P2E7	1040 aa		10.89	□□□□□ -0.67
KTN1-223	ENST00000555573	MFRP	Q9BY79	579 aa		10.89	□□□□□ -0.67
KTN1-223	ENST00000555573	C19orf67	A6NJJ6	358 aa		10.88	□□□□□ -0.67
KTN1-223	ENST00000555573	CABP2	Q9NPB3	220 aa		10.87	□□□□□ -0.67
KTN1-223	ENST00000555573	EFCAB3	Q8N7B9	438 aa		10.86	□□□□□ -0.67
KTN1-223	ENST00000555573	EVX2	Q03828	476 aa		10.84	□□□□□ -0.67
KTN1-223	ENST00000555573	MS4A3	Q96HJ5	214 aa		10.81	□□□□□ -0.68
KTN1-223	ENST00000555573	TRPC6	Q9Y210	931 aa		10.81	□□□□□ -0.68
KTN1-223	ENST00000555573	CADPS2	Q86UW7	1296 aa		10.8	□□□□□ -0.68
KTN1-223	ENST00000555573	PHF8	Q9UPP1	1060 aa		10.8	□□□□□ -0.68
KTN1-223	ENST00000555573	FBXO22	Q8NEZ5	403 aa		10.79	□□□□□ -0.68
KTN1-223	ENST00000555573	SOX12	O15370	315 aa		10.78	□□□□□ -0.68
KTN1-223	ENST00000555573	PPP1R37	O75864	691 aa		10.78	□□□□□ -0.68
KTN1-223	ENST00000555573	NLRP6	P59044	892 aa		10.78	□□□□□ -0.68
KTN1-223	ENST00000555573	TMEM106C	Q9BVX2	250 aa		10.78	□□□□□ -0.68
KTN1-223	ENST00000555573	POTEM	A6NI47	508 aa		10.75	□□□□□ -0.69
KTN1-223	ENST00000555573	PRKCSH	P14314	528 aa	Predicted RBP	10.73	□□□□□ -0.69
KTN1-223	ENST00000555573	NBR1	Q14596	966 aa		10.73	□□□□□ -0.69
KTN1-223	ENST00000555573	GOLGA2	Q08379	1002 aa		10.72	□□□□□ -0.69
KTN1-223	ENST00000555573	MS4A4A	Q96JQ5	239 aa		10.7	□□□□□ -0.7
KTN1-223	ENST00000555573	TTLL13P	A6NNM8	815 aa		10.69	□□□□□ -0.7
KTN1-223	ENST00000555573	GALR2	O43603	387 aa	Predicted RBP	10.69	□□□□□ -0.7
KTN1-223	ENST00000555573	TIE1	P35590	1138 aa		10.69	□□□□□ -0.7
KTN1-223	ENST00000555573	GABBR2	O75899	941 aa		10.67	□□□□□ -0.7
KTN1-223	ENST00000555573	BMP2K	Q9NSY1	1161 aa	Predicted RBP	10.67	□□□□□ -0.7
KTN1-223	ENST00000555573	MKRN3	Q13064	507 aa	Known RBP	10.67	□□□□□ -0.7
KTN1-223	ENST00000555573	WDR70	Q9NW82	654 aa		10.67	□□□□□ -0.7
KTN1-223	ENST00000555573	TPRN	Q4KMQ1	711 aa		10.65	□□□□□ -0.7
KTN1-223	ENST00000555573	POTEG	Q6S5H5	508 aa		10.65	□□□□□ -0.7
KTN1-223	ENST00000555573	P3H3	Q8IVL6	736 aa		10.62	□□□□□ -0.71
KTN1-223	ENST00000555573	KCNV2	Q8TDN2	545 aa		10.62	□□□□□ -0.71
KTN1-223	ENST00000555573	TRIM35	Q9UPQ4	493 aa		10.61	□□□□□ -0.71
KTN1-223	ENST00000555573	NCKAP5L	Q9HCH0	1330 aa		10.59	□□□□□ -0.71
KTN1-223	ENST00000555573	ILDR1	Q86SU0	546 aa	Predicted RBP	10.58	□□□□□ -0.72
KTN1-223	ENST00000555573	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	10.58	□□□□□ -0.72	2e-8	■■■■□ 23
KTN1-223	ENST00000555573	CLCN6	P51797	869 aa		10.58	□□□□□ -0.72
KTN1-223	ENST00000555573	ATN1	P54259	1190 aa	Predicted RBP	10.55	□□□□□ -0.72
KTN1-223	ENST00000555573	LARP6	Q9BRS8	491 aa	Known RBP	10.54	□□□□□ -0.72
KTN1-223	ENST00000555573	PDE4A	P27815	886 aa		10.53	□□□□□ -0.72
KTN1-223	ENST00000555573	E2F4	Q16254	413 aa		10.53	□□□□□ -0.72
KTN1-223	ENST00000555573	CRISPLD2	Q9H0B8	497 aa		10.53	□□□□□ -0.72
KTN1-223	ENST00000555573	ATMIN	O43313	823 aa	Predicted RBP	10.52	□□□□□ -0.73
KTN1-223	ENST00000555573	DPY19L2	Q6NUT2	758 aa		10.52	□□□□□ -0.73
KTN1-223	ENST00000555573	MFSD10	Q14728	455 aa		10.5	□□□□□ -0.73
KTN1-223	ENST00000555573	ASTL	Q6HA08	431 aa	Predicted RBP	10.5	□□□□□ -0.73
KTN1-223	ENST00000555573	PDCD7	Q8N8D1	485 aa	Known RBP	10.49	□□□□□ -0.73
KTN1-223	ENST00000555573	ARHGEF1	Q92888	912 aa	Known RBP	10.49	□□□□□ -0.73
KTN1-223	ENST00000555573	DDX27	Q96GQ7	796 aa	Known RBP	10.48	□□□□□ -0.73
KTN1-223	ENST00000555573	IRX5	P78411	483 aa	Predicted RBP	10.47	□□□□□ -0.73
KTN1-223	ENST00000555573	IER5L	Q5T953	404 aa		10.44	□□□□□ -0.74

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