RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 TSHZ2Q9NRE2 1034 aa25.06■■□□□ 1.6
SYNE3-202ENST00000553340 PHLDB1Q86UU1 1377 aa25.05■■□□□ 1.6
SYNE3-202ENST00000553340 FHAD1B1AJZ9 1412 aa25.04■■□□□ 1.6
SYNE3-202ENST00000553340 WDR97A6NE52 1622 aa25.02■■□□□ 1.6
SYNE3-202ENST00000553340 TIMELESSQ9UNS1 1208 aa25.01■■□□□ 1.59
SYNE3-202ENST00000553340 FAM50AQ14320 339 aaKnown RBP25■■□□□ 1.59
SYNE3-202ENST00000553340 DDX10Q13206 875 aaKnown RBP24.99■■□□□ 1.59
SYNE3-202ENST00000553340 SIN3AQ96ST3 1273 aa24.99■■□□□ 1.59
SYNE3-202ENST00000553340 CFAP43Q8NDM7 1665 aa24.97■■□□□ 1.59
SYNE3-202ENST00000553340 FGD5Q6ZNL6 1462 aa24.96■■□□□ 1.59
SYNE3-202ENST00000553340 CADPSQ9ULU8 1353 aa24.92■■□□□ 1.58
SYNE3-202ENST00000553340 PCF11O94913 1555 aaKnown RBP24.92■■□□□ 1.58
SYNE3-202ENST00000553340 PPP1R15AO75807 674 aaPredicted RBP24.91■■□□□ 1.58
SYNE3-202ENST00000553340 FKBP8Q14318 412 aa24.86■■□□□ 1.57
SYNE3-202ENST00000553340 ATP1B4Q9UN42 357 aaPredicted RBP24.86■■□□□ 1.57
SYNE3-202ENST00000553340 P3H3Q8IVL6 736 aa24.85■■□□□ 1.57
SYNE3-202ENST00000553340 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.85■■□□□ 1.57
SYNE3-202ENST00000553340 CCER2I3L3R5 266 aa24.84■■□□□ 1.57
SYNE3-202ENST00000553340 BCANQ96GW7 911 aa24.83■■□□□ 1.57
SYNE3-202ENST00000553340 FYCO1Q9BQS8 1478 aa24.83■■□□□ 1.57
SYNE3-202ENST00000553340 ANP32EQ9BTT0 268 aa24.81■■□□□ 1.56
SYNE3-202ENST00000553340 ANP32CO43423 234 aa24.8■■□□□ 1.56
SYNE3-202ENST00000553340 FHOD3Q2V2M9 1422 aa24.79■■□□□ 1.56
SYNE3-202ENST00000553340 EFCAB5A4FU69 1503 aa24.79■■□□□ 1.56
SYNE3-202ENST00000553340 CASKIN1Q8WXD9 1431 aa24.78■■□□□ 1.56
SYNE3-202ENST00000553340 NEFLP07196 543 aa24.78■■□□□ 1.56
SYNE3-202ENST00000553340 AQRO60306 1485 aaKnown RBP eCLIP24.78■■□□□ 1.565e-6■■□□□ 14.3
SYNE3-202ENST00000553340 HIRIP3Q9BW71 556 aaPredicted RBP24.76■■□□□ 1.55
SYNE3-202ENST00000553340 TONSLQ96HA7 1378 aa24.72■■□□□ 1.55
SYNE3-202ENST00000553340 FGD6Q6ZV73 1430 aa24.7■■□□□ 1.54
SYNE3-202ENST00000553340 TRIM52Q96A61 297 aa24.69■■□□□ 1.54
SYNE3-202ENST00000553340 FANCD2Q9BXW9 1451 aa24.68■■□□□ 1.54
SYNE3-202ENST00000553340 ABCA10Q8WWZ4 1543 aa24.67■■□□□ 1.54
SYNE3-202ENST00000553340 CCDC18Q5T9S5 1454 aa24.67■■□□□ 1.54
SYNE3-202ENST00000553340 FMN1Q68DA7 1419 aa24.67■■□□□ 1.54
SYNE3-202ENST00000553340 CC2D2AQ9P2K1 1620 aa24.66■■□□□ 1.54
SYNE3-202ENST00000553340 DNMBPQ6XZF7 1577 aa24.65■■□□□ 1.54
SYNE3-202ENST00000553340 CUL7Q14999 1698 aa24.64■■□□□ 1.54
SYNE3-202ENST00000553340 UACAQ9BZF9 1416 aa24.64■■□□□ 1.54
SYNE3-202ENST00000553340 CTTNBP2Q8WZ74 1663 aa24.64■■□□□ 1.53
SYNE3-202ENST00000553340 RAD54L2Q9Y4B4 1467 aa24.64■■□□□ 1.53
SYNE3-202ENST00000553340 HFM1A2PYH4 1435 aa24.63■■□□□ 1.53
SYNE3-202ENST00000553340 MTUS2Q5JR59 1369 aa24.6■■□□□ 1.53
SYNE3-202ENST00000553340 POLA1P09884 1462 aaPredicted RBP24.59■■□□□ 1.53
SYNE3-202ENST00000553340 PTPN23Q9H3S7 1636 aa24.58■■□□□ 1.53
SYNE3-202ENST00000553340 SNAPC4Q5SXM2 1469 aa24.58■■□□□ 1.53
SYNE3-202ENST00000553340 TOPBP1Q92547 1522 aa24.56■■□□□ 1.52
SYNE3-202ENST00000553340 PTPRKQ15262 1439 aa24.56■■□□□ 1.52
SYNE3-202ENST00000553340 RBM19Q9Y4C8 960 aaKnown RBP24.56■■□□□ 1.52
SYNE3-202ENST00000553340 NAIPQ13075 1403 aa24.52■■□□□ 1.52
SYNE3-202ENST00000553340 MYOM3Q5VTT5 1437 aa24.51■■□□□ 1.51
SYNE3-202ENST00000553340 NCOA2Q15596 1464 aa24.49■■□□□ 1.51
SYNE3-202ENST00000553340 SAMD9Q5K651 1589 aa24.46■■□□□ 1.51
SYNE3-202ENST00000553340 SUPT6HQ7KZ85 1726 aaKnown RBP24.44■■□□□ 1.5
SYNE3-202ENST00000553340 KDM5BQ9UGL1 1544 aa24.44■■□□□ 1.5
SYNE3-202ENST00000553340 LRRIQ1Q96JM4 1722 aa24.44■■□□□ 1.5
SYNE3-202ENST00000553340 THOC2Q8NI27 1593 aaKnown RBP24.44■■□□□ 1.5
SYNE3-202ENST00000553340 GRIN2BQ13224 1484 aa24.43■■□□□ 1.5
SYNE3-202ENST00000553340 HNRNPUQ00839 825 aaKnown RBP eCLIP24.42■■□□□ 1.5
SYNE3-202ENST00000553340 EHBP1L1Q8N3D4 1523 aa24.42■■□□□ 1.5
SYNE3-202ENST00000553340 UGGT2Q9NYU1 1516 aa24.35■■□□□ 1.49
SYNE3-202ENST00000553340 WASHC2AQ641Q2 1341 aa24.35■■□□□ 1.49
SYNE3-202ENST00000553340 NESP48681 1621 aa24.34■■□□□ 1.49
SYNE3-202ENST00000553340 HSPA5P11021 654 aaKnown RBP24.34■■□□□ 1.49
SYNE3-202ENST00000553340 ARHGEF11O15085 1522 aa24.32■■□□□ 1.48
SYNE3-202ENST00000553340 ABCA5Q8WWZ7 1642 aa24.32■■□□□ 1.48
SYNE3-202ENST00000553340 RRP7BPQ9NSQ0 103 aa24.31■■□□□ 1.48
SYNE3-202ENST00000553340 HECW1Q76N89 1606 aa24.31■■□□□ 1.48
SYNE3-202ENST00000553340 GCC2Q8IWJ2 1684 aa24.31■■□□□ 1.48
SYNE3-202ENST00000553340 EIF4G2P78344 907 aaKnown RBP eCLIP24.3■■□□□ 1.48
SYNE3-202ENST00000553340 TDRD9Q8NDG6 1382 aaKnown RBP24.3■■□□□ 1.48
SYNE3-202ENST00000553340 TCOF1Q13428 1488 aaKnown RBP24.29■■□□□ 1.48
SYNE3-202ENST00000553340 GAPVD1Q14C86 1478 aa24.29■■□□□ 1.48
SYNE3-202ENST00000553340 KIF21AQ7Z4S6 1674 aa24.29■■□□□ 1.48
SYNE3-202ENST00000553340 CDK11AQ9UQ88 783 aaPredicted RBP24.29■■□□□ 1.48
SYNE3-202ENST00000553340 URB2Q14146 1524 aaKnown RBP24.28■■□□□ 1.48
SYNE3-202ENST00000553340 AKNAQ7Z591 1439 aa24.28■■□□□ 1.48
SYNE3-202ENST00000553340 ERICH6BQ5W0A0 696 aa24.27■■□□□ 1.48
SYNE3-202ENST00000553340 CHIC2Q9UKJ5 165 aa24.27■■□□□ 1.48
SYNE3-202ENST00000553340 DENND4BO75064 1496 aaPredicted RBP24.26■■□□□ 1.47
SYNE3-202ENST00000553340 MAGI3Q5TCQ9 1506 aa24.26■■□□□ 1.47
SYNE3-202ENST00000553340 CNTLNQ9NXG0 1405 aa24.25■■□□□ 1.47
SYNE3-202ENST00000553340 IRX6P78412 446 aaPredicted RBP24.24■■□□□ 1.47
SYNE3-202ENST00000553340 FANCIQ9NVI1 1328 aa24.23■■□□□ 1.47
SYNE3-202ENST00000553340 LAMC3Q9Y6N6 1575 aa24.21■■□□□ 1.47
SYNE3-202ENST00000553340 MPHOSPH9Q99550 1183 aa24.2■■□□□ 1.47
SYNE3-202ENST00000553340 MSH5O43196 834 aa24.2■■□□□ 1.46
SYNE3-202ENST00000553340 L3MBTL2Q969R5 705 aa24.17■■□□□ 1.46
SYNE3-202ENST00000553340 KDM6BO15054 1643 aa24.17■■□□□ 1.46
SYNE3-202ENST00000553340 MIA2Q96PC5 1412 aa24.17■■□□□ 1.46
SYNE3-202ENST00000553340 PPP4R2Q9NY27 417 aa24.16■■□□□ 1.46
SYNE3-202ENST00000553340 BCL11AQ9H165 835 aa24.16■■□□□ 1.46
SYNE3-202ENST00000553340 NCOA1Q15788 1441 aa24.16■■□□□ 1.46
SYNE3-202ENST00000553340 CCDC7Q96M83 1385 aa24.15■■□□□ 1.46
SYNE3-202ENST00000553340 PRKRIP1Q9H875 184 aaPredicted RBP24.15■■□□□ 1.46
SYNE3-202ENST00000553340 CCDC184Q52MB2 194 aa24.14■■□□□ 1.45
SYNE3-202ENST00000553340 EPRSP07814 1512 aaKnown RBP24.13■■□□□ 1.45
SYNE3-202ENST00000553340 C11orf95C9JLR9 678 aaPredicted RBP24.11■■□□□ 1.45
SYNE3-202ENST00000553340 FAM9BQ8IZU0 186 aa24.1■■□□□ 1.45
SYNE3-202ENST00000553340 MRS2Q9HD23 443 aa24.1■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms