RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 KDM2AQ9Y2K7 1162 aa22.45■■□□□ 1.18
CUX1-213ENST00000549414 MYT1Q01538 1121 aa22.43■■□□□ 1.18
CUX1-213ENST00000549414 CCNB3Q8WWL7 1395 aa22.42■■□□□ 1.18
CUX1-213ENST00000549414 TSPY4P0CV99 314 aa22.42■■□□□ 1.18
CUX1-213ENST00000549414 TSPY10P0CW01 314 aa22.42■■□□□ 1.18
CUX1-213ENST00000549414 CHGAP10645 457 aaKnown RBP22.39■■□□□ 1.18
CUX1-213ENST00000549414 RAPGEF2Q9Y4G8 1499 aa22.37■■□□□ 1.17
CUX1-213ENST00000549414 CLSPNQ9HAW4 1339 aa22.37■■□□□ 1.17
CUX1-213ENST00000549414 SALL2Q9Y467 1007 aaPredicted RBP22.36■■□□□ 1.17
CUX1-213ENST00000549414 KCNH8Q96L42 1107 aa22.34■■□□□ 1.17
CUX1-213ENST00000549414 ESF1Q9H501 851 aaKnown RBP22.33■■□□□ 1.17
CUX1-213ENST00000549414 TDRD9Q8NDG6 1382 aaKnown RBP22.33■■□□□ 1.17
CUX1-213ENST00000549414 PLEKHD1A6NEE1 506 aa22.29■■□□□ 1.16
CUX1-213ENST00000549414 CFDP1Q9UEE9 299 aaPredicted RBP22.29■■□□□ 1.16
CUX1-213ENST00000549414 EIF4G2P78344 907 aaKnown RBP eCLIP22.29■■□□□ 1.161e-6■■■■■ 34
CUX1-213ENST00000549414 MRS2Q9HD23 443 aa22.28■■□□□ 1.16
CUX1-213ENST00000549414 SENP3-EIF4A1A0A087X0R7 540 aa22.28■■□□□ 1.16
CUX1-213ENST00000549414 FHAD1B1AJZ9 1412 aa22.27■■□□□ 1.15
CUX1-213ENST00000549414 IRX6P78412 446 aaPredicted RBP22.26■■□□□ 1.15
CUX1-213ENST00000549414 SENP3Q9H4L4 574 aaPredicted RBP22.25■■□□□ 1.15
CUX1-213ENST00000549414 EIF4G1Q04637 1599 aaKnown RBP22.25■■□□□ 1.15
CUX1-213ENST00000549414 CADPSQ9ULU8 1353 aa22.22■■□□□ 1.15
CUX1-213ENST00000549414 STAG3Q9UJ98 1225 aa22.22■■□□□ 1.15
CUX1-213ENST00000549414 RGL3Q3MIN7 710 aa22.21■■□□□ 1.15
CUX1-213ENST00000549414 TMC1Q8TDI8 760 aa22.2■■□□□ 1.14
CUX1-213ENST00000549414 SLC24A1O60721 1099 aa22.19■■□□□ 1.14
CUX1-213ENST00000549414 ERCC6Q03468 1493 aa22.17■■□□□ 1.14
CUX1-213ENST00000549414 BCL11AQ9H165 835 aa22.14■■□□□ 1.13
CUX1-213ENST00000549414 RAB3GAP2Q9H2M9 1393 aa22.12■■□□□ 1.13
CUX1-213ENST00000549414 FHOD3Q2V2M9 1422 aa22.11■■□□□ 1.13
CUX1-213ENST00000549414 SETD5Q9C0A6 1442 aa22.1■■□□□ 1.13
CUX1-213ENST00000549414 FOXD1Q16676 465 aa22.1■■□□□ 1.13
CUX1-213ENST00000549414 RTL5Q5HYW3 569 aaPredicted RBP22.1■■□□□ 1.13
CUX1-213ENST00000549414 CANXP27824 592 aaKnown RBP22.1■■□□□ 1.13
CUX1-213ENST00000549414 ARHGAP35Q9NRY4 1499 aa22.05■■□□□ 1.12
CUX1-213ENST00000549414 PDS5BQ9NTI5 1447 aa22.04■■□□□ 1.12
CUX1-213ENST00000549414 NPM2Q86SE8 214 aaKnown RBP22.02■■□□□ 1.12
CUX1-213ENST00000549414 CARD11Q9BXL7 1154 aa21.98■■□□□ 1.11
CUX1-213ENST00000549414 FANCD2Q9BXW9 1451 aa21.95■■□□□ 1.1
CUX1-213ENST00000549414 CCDC136Q96JN2 1154 aa21.94■■□□□ 1.1
CUX1-213ENST00000549414 FMN1Q68DA7 1419 aa21.94■■□□□ 1.1
CUX1-213ENST00000549414 SUPT16HQ9Y5B9 1047 aaKnown RBP21.94■■□□□ 1.1
CUX1-213ENST00000549414 IGF1RP08069 1367 aa21.92■■□□□ 1.1
CUX1-213ENST00000549414 DHX57Q6P158 1386 aaKnown RBP21.9■■□□□ 1.1
CUX1-213ENST00000549414 PLEKHG5O94827 1062 aa21.89■■□□□ 1.09
CUX1-213ENST00000549414 NEFMP07197 916 aa21.88■■□□□ 1.09
CUX1-213ENST00000549414 HSPA5P11021 654 aaKnown RBP21.87■■□□□ 1.09
CUX1-213ENST00000549414 ANP32AP39687 249 aaKnown RBP21.87■■□□□ 1.09
CUX1-213ENST00000549414 WDR43Q15061 677 aaKnown RBP eCLIP21.87■■□□□ 1.09
CUX1-213ENST00000549414 FGD5Q6ZNL6 1462 aa21.87■■□□□ 1.09
CUX1-213ENST00000549414 RAD54L2Q9Y4B4 1467 aa21.86■■□□□ 1.09
CUX1-213ENST00000549414 TIMELESSQ9UNS1 1208 aa21.86■■□□□ 1.09
CUX1-213ENST00000549414 DCAF11Q8TEB1 546 aa21.86■■□□□ 1.09
CUX1-213ENST00000549414 SYNJ1O43426 1573 aa21.85■■□□□ 1.09
CUX1-213ENST00000549414 PPP1R15AO75807 674 aaPredicted RBP21.84■■□□□ 1.09
CUX1-213ENST00000549414 MPHOSPH9Q99550 1183 aa21.84■■□□□ 1.09
CUX1-213ENST00000549414 PKD2Q13563 968 aa21.84■■□□□ 1.09
CUX1-213ENST00000549414 NCAPD3P42695 1498 aa21.84■■□□□ 1.09
CUX1-213ENST00000549414 ARID4BQ4LE39 1312 aaPredicted RBP21.8■■□□□ 1.08
CUX1-213ENST00000549414 KIF21BO75037 1637 aa21.78■■□□□ 1.08
CUX1-213ENST00000549414 L3MBTL2Q969R5 705 aa21.75■■□□□ 1.07
CUX1-213ENST00000549414 ZBTB47Q9UFB7 747 aaPredicted RBP21.74■■□□□ 1.07
CUX1-213ENST00000549414 TRHP20396 242 aaPredicted RBP21.72■■□□□ 1.07
CUX1-213ENST00000549414 CC2D1BQ5T0F9 858 aaKnown RBP21.71■■□□□ 1.07
CUX1-213ENST00000549414 CARMIL2Q6F5E8 1435 aa21.71■■□□□ 1.07
CUX1-213ENST00000549414 JPH4Q96JJ6 628 aa21.7■■□□□ 1.06
CUX1-213ENST00000549414 ARAP1Q96P48 1450 aa21.69■■□□□ 1.06
CUX1-213ENST00000549414 HNRNPMP52272 730 aaKnown RBP eCLIP21.69■■□□□ 1.069e-7■■■□□ 19.2
CUX1-213ENST00000549414 KNSTRNQ9Y448 316 aa21.69■■□□□ 1.06
CUX1-213ENST00000549414 NUP155O75694 1391 aa21.68■■□□□ 1.06
CUX1-213ENST00000549414 PHLDB1Q86UU1 1377 aa21.66■■□□□ 1.06
CUX1-213ENST00000549414 CCER2I3L3R5 266 aa21.65■■□□□ 1.06
CUX1-213ENST00000549414 CFTRP13569 1480 aa21.64■■□□□ 1.05
CUX1-213ENST00000549414 GAPVD1Q14C86 1478 aa21.63■■□□□ 1.05
CUX1-213ENST00000549414 NESP48681 1621 aa21.63■■□□□ 1.05
CUX1-213ENST00000549414 TNNT2P45379 298 aaPredicted RBP21.62■■□□□ 1.05
CUX1-213ENST00000549414 MLECQ14165 292 aa21.61■■□□□ 1.05
CUX1-213ENST00000549414 NBR1Q14596 966 aa21.61■■□□□ 1.05
CUX1-213ENST00000549414 B4GALNT3Q6L9W6 998 aa21.61■■□□□ 1.05
CUX1-213ENST00000549414 NEUROD2Q15784 382 aa21.6■■□□□ 1.05
CUX1-213ENST00000549414 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.6■■□□□ 1.05
CUX1-213ENST00000549414 C14orf37Q86TY3 774 aa21.58■■□□□ 1.05
CUX1-213ENST00000549414 BICRAQ9NZM4 1560 aa21.58■■□□□ 1.05
CUX1-213ENST00000549414 ANKRD30AQ9BXX3 1397 aa21.57■■□□□ 1.04
CUX1-213ENST00000549414 AQRO60306 1485 aaKnown RBP eCLIP21.57■■□□□ 1.044e-7■■■■□ 26.1
CUX1-213ENST00000549414 CUX1P39880 1505 aa21.56■■□□□ 1.04
CUX1-213ENST00000549414 ZNF644Q9H582 1327 aaPredicted RBP21.56■■□□□ 1.04
CUX1-213ENST00000549414 CCDC18Q5T9S5 1454 aa21.56■■□□□ 1.04
CUX1-213ENST00000549414 ZBTB7CA1YPR0 619 aa21.55■■□□□ 1.04
CUX1-213ENST00000549414 PRXQ9BXM0 1461 aa21.55■■□□□ 1.04
CUX1-213ENST00000549414 CDCA8Q53HL2 280 aa21.55■■□□□ 1.04
CUX1-213ENST00000549414 A0A0G2JS52 829 aa21.54■■□□□ 1.04
CUX1-213ENST00000549414 GGT6Q6P531 493 aa21.53■■□□□ 1.04
CUX1-213ENST00000549414 LRRC9Q6ZRR7 1453 aa21.52■■□□□ 1.04
CUX1-213ENST00000549414 TMF1P82094 1093 aa21.51■■□□□ 1.03
CUX1-213ENST00000549414 PPM1GO15355 546 aaPredicted RBP21.51■■□□□ 1.03
CUX1-213ENST00000549414 PPP4R2Q9NY27 417 aa21.51■■□□□ 1.03
CUX1-213ENST00000549414 TOP2BQ02880 1626 aa21.5■■□□□ 1.03
CUX1-213ENST00000549414 EFCAB2Q5VUJ9 269 aa21.49■■□□□ 1.03
CUX1-213ENST00000549414 FGD6Q6ZV73 1430 aa21.49■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms