RNA–Protein interactions for RNA: ENST00000542354.1

TRAV1-1-201, Transcript of T cell receptor alpha variable 1-1, humanhuman

APPRIS P1 BASIC

Gene TRAV1-1, Length 392 nt, Biotype TR V gene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1-201ENST00000542354 LHX8Q68G74 356 aa5.38□□□□□ -1.55
TRAV1-1-201ENST00000542354 CYB5RLQ6IPT4 315 aa5.37□□□□□ -1.55
TRAV1-1-201ENST00000542354 ILDR2Q71H61 639 aa5.37□□□□□ -1.55
TRAV1-1-201ENST00000542354 SHROOM4Q9ULL8 1493 aa5.37□□□□□ -1.55
TRAV1-1-201ENST00000542354 SPDYE4A6NLX3 237 aa5.35□□□□□ -1.55
TRAV1-1-201ENST00000542354 PLEKHG5O94827 1062 aa5.35□□□□□ -1.55
TRAV1-1-201ENST00000542354 ZNF579Q8NAF0 562 aaKnown RBP5.35□□□□□ -1.55
TRAV1-1-201ENST00000542354 CSRNP3Q8WYN3 585 aa5.35□□□□□ -1.55
TRAV1-1-201ENST00000542354 ZRANB1Q9UGI0 708 aa5.34□□□□□ -1.55
TRAV1-1-201ENST00000542354 RIMBP3CA6NJZ7 1639 aa5.32□□□□□ -1.56
TRAV1-1-201ENST00000542354 RIMBP3BA6NNM3 1639 aa5.32□□□□□ -1.56
TRAV1-1-201ENST00000542354 RIMBP3Q9UFD9 1639 aa5.32□□□□□ -1.56
TRAV1-1-201ENST00000542354 DISP3Q9P2K9 1392 aa5.29□□□□□ -1.56
TRAV1-1-201ENST00000542354 EHMT2Q96KQ7 1210 aa5.29□□□□□ -1.56
TRAV1-1-201ENST00000542354 CREBZFQ9NS37 354 aa5.28□□□□□ -1.56
TRAV1-1-201ENST00000542354 BAZ1AQ9NRL2 1556 aaPredicted RBP5.25□□□□□ -1.57
TRAV1-1-201ENST00000542354 ARHGEF11O15085 1522 aa5.25□□□□□ -1.57
TRAV1-1-201ENST00000542354 KDM4FA0A1W2PPD8 638 aa5.23□□□□□ -1.57
TRAV1-1-201ENST00000542354 MAMSTRQ6ZN01 415 aa5.23□□□□□ -1.57
TRAV1-1-201ENST00000542354 ZBTB47Q9UFB7 747 aaPredicted RBP5.23□□□□□ -1.57
TRAV1-1-201ENST00000542354 ERCC6L2Q5T890 1561 aa5.22□□□□□ -1.57
TRAV1-1-201ENST00000542354 THOC2Q8NI27 1593 aaKnown RBP5.21□□□□□ -1.57
TRAV1-1-201ENST00000542354 SLC39A7Q92504 469 aa5.21□□□□□ -1.58
TRAV1-1-201ENST00000542354 POTEIP0CG38 1075 aa5.2□□□□□ -1.58
TRAV1-1-201ENST00000542354 GALR2O43603 387 aaPredicted RBP5.19□□□□□ -1.58
TRAV1-1-201ENST00000542354 C7P10643 843 aa5.19□□□□□ -1.58
TRAV1-1-201ENST00000542354 NESP48681 1621 aa5.17□□□□□ -1.58
TRAV1-1-201ENST00000542354 PHF12Q96QT6 1004 aa5.17□□□□□ -1.58
TRAV1-1-201ENST00000542354 SCUBE2Q9NQ36 999 aa5.17□□□□□ -1.58
TRAV1-1-201ENST00000542354 PCDH10Q9P2E7 1040 aa5.16□□□□□ -1.58
TRAV1-1-201ENST00000542354 ASTLQ6HA08 431 aaPredicted RBP5.15□□□□□ -1.59
TRAV1-1-201ENST00000542354 MIER1Q8N108 512 aa5.15□□□□□ -1.59
TRAV1-1-201ENST00000542354 MNX1P50219 401 aaPredicted RBP5.14□□□□□ -1.59
TRAV1-1-201ENST00000542354 PROM2Q8N271 834 aa5.14□□□□□ -1.59
TRAV1-1-201ENST00000542354 METRNQ9UJH8 293 aa5.14□□□□□ -1.59
TRAV1-1-201ENST00000542354 ARAP1Q96P48 1450 aa5.13□□□□□ -1.59
TRAV1-1-201ENST00000542354 SMARCA2P51531 1590 aa5.13□□□□□ -1.59
TRAV1-1-201ENST00000542354 PLCD3Q8N3E9 789 aa5.13□□□□□ -1.59
TRAV1-1-201ENST00000542354 TSPYL2Q9H2G4 693 aaPredicted RBP5.13□□□□□ -1.59
TRAV1-1-201ENST00000542354 MYO15BQ96JP2 1530 aa5.13□□□□□ -1.59
TRAV1-1-201ENST00000542354 MS4A3Q96HJ5 214 aa5.12□□□□□ -1.59
TRAV1-1-201ENST00000542354 SGIP1Q9BQI5 828 aa5.12□□□□□ -1.59
TRAV1-1-201ENST00000542354 PLSCR2Q9NRY7 297 aa5.12□□□□□ -1.59
TRAV1-1-201ENST00000542354 HECW2Q9P2P5 1572 aa5.11□□□□□ -1.59
TRAV1-1-201ENST00000542354 SYNJ2O15056 1496 aa5.1□□□□□ -1.59
TRAV1-1-201ENST00000542354 ATMINO43313 823 aaPredicted RBP5.1□□□□□ -1.59
TRAV1-1-201ENST00000542354 SEC24BO95487 1268 aa5.1□□□□□ -1.59
TRAV1-1-201ENST00000542354 TIE1P35590 1138 aa5.1□□□□□ -1.59
TRAV1-1-201ENST00000542354 PDS5BQ9NTI5 1447 aa5.1□□□□□ -1.59
TRAV1-1-201ENST00000542354 CCDC61Q9Y6R9 512 aa5.1□□□□□ -1.59
TRAV1-1-201ENST00000542354 FAM212AQ96EL1 285 aa5.09□□□□□ -1.59
TRAV1-1-201ENST00000542354 OTUD5Q96G74 571 aa5.09□□□□□ -1.59
TRAV1-1-201ENST00000542354 IER5LQ5T953 404 aa5.08□□□□□ -1.6
TRAV1-1-201ENST00000542354 SCRIBQ14160 1630 aa5.08□□□□□ -1.6
TRAV1-1-201ENST00000542354 POTEMA6NI47 508 aa5.07□□□□□ -1.6
TRAV1-1-201ENST00000542354 KIF12Q96FN5 646 aa5.07□□□□□ -1.6
TRAV1-1-201ENST00000542354 FBXO3Q9UK99 471 aa5.07□□□□□ -1.6
TRAV1-1-201ENST00000542354 NCAPD3P42695 1498 aa5.07□□□□□ -1.6
TRAV1-1-201ENST00000542354 POTEGQ6S5H5 508 aa5.05□□□□□ -1.6
TRAV1-1-201ENST00000542354 SPATA31D1Q6ZQQ2 1576 aa5.04□□□□□ -1.6
TRAV1-1-201ENST00000542354 PCDHB13Q9Y5F0 798 aa5.04□□□□□ -1.6
TRAV1-1-201ENST00000542354 MRC2Q9UBG0 1479 aa5.04□□□□□ -1.6
TRAV1-1-201ENST00000542354 ATN1P54259 1190 aaPredicted RBP5.03□□□□□ -1.6
TRAV1-1-201ENST00000542354 RSF1Q96T23 1441 aaPredicted RBP5.03□□□□□ -1.6
TRAV1-1-201ENST00000542354 LAMC3Q9Y6N6 1575 aa5.03□□□□□ -1.6
TRAV1-1-201ENST00000542354 KIF21AQ7Z4S6 1674 aa5.02□□□□□ -1.61
TRAV1-1-201ENST00000542354 MAP3K13O43283 966 aa5.02□□□□□ -1.61
TRAV1-1-201ENST00000542354 PELP1Q8IZL8 1130 aaKnown RBP5.02□□□□□ -1.61
TRAV1-1-201ENST00000542354 BMP2KQ9NSY1 1161 aaPredicted RBP5.02□□□□□ -1.61
TRAV1-1-201ENST00000542354 WDR62O43379 1518 aa5.02□□□□□ -1.61
TRAV1-1-201ENST00000542354 PLCG2P16885 1265 aa5.01□□□□□ -1.61
TRAV1-1-201ENST00000542354 TTLL13PA6NNM8 815 aa5□□□□□ -1.61
TRAV1-1-201ENST00000542354 POTEB2H3BUK9 544 aa5□□□□□ -1.61
TRAV1-1-201ENST00000542354 SNPHO15079 494 aa5□□□□□ -1.61
TRAV1-1-201ENST00000542354 RASEFQ8IZ41 740 aa5□□□□□ -1.61
TRAV1-1-201ENST00000542354 CERKQ8TCT0 537 aa4.99□□□□□ -1.61
TRAV1-1-201ENST00000542354 GOLGA2Q08379 1002 aa4.98□□□□□ -1.61
TRAV1-1-201ENST00000542354 GSE1Q14687 1217 aa4.98□□□□□ -1.61
TRAV1-1-201ENST00000542354 FAM163AQ96GL9 167 aaPredicted RBP4.98□□□□□ -1.61
TRAV1-1-201ENST00000542354 TRIM35Q9UPQ4 493 aa4.98□□□□□ -1.61
TRAV1-1-201ENST00000542354 TMEM106CQ9BVX2 250 aa4.97□□□□□ -1.61
TRAV1-1-201ENST00000542354 ADGRL1O94910 1474 aa4.96□□□□□ -1.62
TRAV1-1-201ENST00000542354 DCAF8Q5TAQ9 597 aa4.96□□□□□ -1.62
TRAV1-1-201ENST00000542354 ZNF467Q7Z7K2 595 aaPredicted RBP4.96□□□□□ -1.62
TRAV1-1-201ENST00000542354 NUBP1P53384 320 aa4.95□□□□□ -1.62
TRAV1-1-201ENST00000542354 FKBP8Q14318 412 aa4.95□□□□□ -1.62
TRAV1-1-201ENST00000542354 TMEM121BQ9BXQ6 578 aaPredicted RBP4.95□□□□□ -1.62
TRAV1-1-201ENST00000542354 SLAIN1Q8ND83 568 aa4.94□□□□□ -1.62
TRAV1-1-201ENST00000542354 OCEL1Q9H607 264 aa4.94□□□□□ -1.62
TRAV1-1-201ENST00000542354 IFNL1Q8IU54 200 aa4.93□□□□□ -1.62
TRAV1-1-201ENST00000542354 KLHL34Q8N239 644 aa4.93□□□□□ -1.62
TRAV1-1-201ENST00000542354 EIF2AK3Q9NZJ5 1116 aaKnown RBP4.93□□□□□ -1.62
TRAV1-1-201ENST00000542354 G3V3G9 751 aa4.92□□□□□ -1.62
TRAV1-1-201ENST00000542354 L3MBTL3Q96JM7 780 aaPredicted RBP4.92□□□□□ -1.62
TRAV1-1-201ENST00000542354 ATAD2BQ9ULI0 1458 aa4.92□□□□□ -1.62
TRAV1-1-201ENST00000542354 FAM69CQ0P6D2 419 aa4.91□□□□□ -1.62
TRAV1-1-201ENST00000542354 MKRN3Q13064 507 aaKnown RBP4.91□□□□□ -1.62
TRAV1-1-201ENST00000542354 C3orf67Q6ZVT6 689 aa4.91□□□□□ -1.62
TRAV1-1-201ENST00000542354 POTEJP0CG39 1038 aa4.9□□□□□ -1.63
TRAV1-1-201ENST00000542354 IFFO2Q5TF58 517 aa4.9□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms