RNA–Protein interactions for RNA: ENST00000542354.1

TRAV1-1-201, Transcript of T cell receptor alpha variable 1-1, humanhuman

APPRIS P1 BASIC

Gene TRAV1-1, Length 392 nt, Biotype TR V gene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1-201ENST00000542354 AEBP2Q6ZN18 517 aaPredicted RBP10.34□□□□□ -0.75
TRAV1-1-201ENST00000542354 CHIC1Q5VXU3 224 aa9.97□□□□□ -0.81
TRAV1-1-201ENST00000542354 SENP3Q9H4L4 574 aaPredicted RBP9.1□□□□□ -0.95
TRAV1-1-201ENST00000542354 PHF23Q9BUL5 403 aaPredicted RBP8.85□□□□□ -0.99
TRAV1-1-201ENST00000542354 FOXD1Q16676 465 aa8.32□□□□□ -1.08
TRAV1-1-201ENST00000542354 MSH5O43196 834 aa8.04□□□□□ -1.12
TRAV1-1-201ENST00000542354 PLPPR3Q6T4P5 718 aa7.98□□□□□ -1.13
TRAV1-1-201ENST00000542354 PIAS4Q8N2W9 510 aaPredicted RBP7.86□□□□□ -1.15
TRAV1-1-201ENST00000542354 POTEDQ86YR6 584 aa7.8□□□□□ -1.16
TRAV1-1-201ENST00000542354 ADRA2BP18089 450 aa7.64□□□□□ -1.19
TRAV1-1-201ENST00000542354 PPP6R1Q9UPN7 881 aa7.61□□□□□ -1.19
TRAV1-1-201ENST00000542354 SCAF1Q9H7N4 1312 aaKnown RBP7.3□□□□□ -1.24
TRAV1-1-201ENST00000542354 DMRT2Q9Y5R5 561 aa7.13□□□□□ -1.27
TRAV1-1-201ENST00000542354 MAPK8IP2Q13387 824 aaPredicted RBP6.99□□□□□ -1.29
TRAV1-1-201ENST00000542354 DCAF8L1A6NGE4 600 aa6.89□□□□□ -1.31
TRAV1-1-201ENST00000542354 PPP4R3CPQ6ZMV5 832 aa6.89□□□□□ -1.31
TRAV1-1-201ENST00000542354 CACNB1Q02641 598 aaPredicted RBP6.88□□□□□ -1.31
TRAV1-1-201ENST00000542354 CNKSR2Q8WXI2 1034 aa6.86□□□□□ -1.31
TRAV1-1-201ENST00000542354 HOXD11P31277 338 aaPredicted RBP6.84□□□□□ -1.31
TRAV1-1-201ENST00000542354 RNF216Q9NWF9 866 aaPredicted RBP6.81□□□□□ -1.32
TRAV1-1-201ENST00000542354 NCBP3Q53F19 620 aaKnown RBP6.78□□□□□ -1.32
TRAV1-1-201ENST00000542354 DNAJC5BQ9UF47 199 aa6.75□□□□□ -1.33
TRAV1-1-201ENST00000542354 C1QBPQ07021 282 aaKnown RBP6.73□□□□□ -1.33
TRAV1-1-201ENST00000542354 RNF39Q9H2S5 420 aa6.72□□□□□ -1.33
TRAV1-1-201ENST00000542354 DNAJC5Q9H3Z4 198 aa6.67□□□□□ -1.34
TRAV1-1-201ENST00000542354 GRWD1Q9BQ67 446 aaKnown RBP eCLIP6.58□□□□□ -1.36
TRAV1-1-201ENST00000542354 APLP2Q06481 763 aa6.47□□□□□ -1.37
TRAV1-1-201ENST00000542354 NPM3O75607 178 aaKnown RBP6.46□□□□□ -1.38
TRAV1-1-201ENST00000542354 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP6.38□□□□□ -1.39
TRAV1-1-201ENST00000542354 HNRNPUL2Q1KMD3 747 aaKnown RBP6.38□□□□□ -1.39
TRAV1-1-201ENST00000542354 CAPN15O75808 1086 aa6.34□□□□□ -1.39
TRAV1-1-201ENST00000542354 U3KPZ7 1027 aaPredicted RBP6.31□□□□□ -1.4
TRAV1-1-201ENST00000542354 ABCC9O60706 1549 aa6.3□□□□□ -1.4
TRAV1-1-201ENST00000542354 ZNF219Q9P2Y4 722 aaPredicted RBP6.29□□□□□ -1.4
TRAV1-1-201ENST00000542354 SAMD1Q6SPF0 538 aaPredicted RBP6.27□□□□□ -1.41
TRAV1-1-201ENST00000542354 DSG3P32926 999 aa6.24□□□□□ -1.41
TRAV1-1-201ENST00000542354 KCNA4P22459 653 aa6.22□□□□□ -1.41
TRAV1-1-201ENST00000542354 SPINK5Q9NQ38 1064 aaPredicted RBP6.19□□□□□ -1.42
TRAV1-1-201ENST00000542354 TRHP20396 242 aaPredicted RBP6.18□□□□□ -1.42
TRAV1-1-201ENST00000542354 RBM42Q9BTD8 480 aaKnown RBP6.17□□□□□ -1.42
TRAV1-1-201ENST00000542354 POTEHQ6S545 545 aa6.15□□□□□ -1.42
TRAV1-1-201ENST00000542354 SLC4A2P04920 1241 aa6.13□□□□□ -1.43
TRAV1-1-201ENST00000542354 MYCNP04198 464 aaPredicted RBP6.11□□□□□ -1.43
TRAV1-1-201ENST00000542354 ABCB7O75027 752 aa6.09□□□□□ -1.43
TRAV1-1-201ENST00000542354 ZBTB12Q9Y330 459 aaPredicted RBP6.07□□□□□ -1.44
TRAV1-1-201ENST00000542354 TRIM41Q8WV44 630 aa6.06□□□□□ -1.44
TRAV1-1-201ENST00000542354 NISCHQ9Y2I1 1504 aa5.99□□□□□ -1.45
TRAV1-1-201ENST00000542354 POLA2Q14181 598 aa5.98□□□□□ -1.45
TRAV1-1-201ENST00000542354 SLC4A1APQ9BWU0 796 aaKnown RBP5.97□□□□□ -1.45
TRAV1-1-201ENST00000542354 FOXD4L1Q9NU39 408 aa5.97□□□□□ -1.45
TRAV1-1-201ENST00000542354 CHRDL2Q6WN34 429 aa5.92□□□□□ -1.46
TRAV1-1-201ENST00000542354 AKT1S1Q96B36 256 aa5.91□□□□□ -1.46
TRAV1-1-201ENST00000542354 ATXN8OSP0DMR3 200 aa5.86□□□□□ -1.47
TRAV1-1-201ENST00000542354 ILDR1Q86SU0 546 aaPredicted RBP5.85□□□□□ -1.47
TRAV1-1-201ENST00000542354 FBLN2P98095 1184 aa5.83□□□□□ -1.48
TRAV1-1-201ENST00000542354 PABPN1Q86U42 306 aaKnown RBP eCLIP5.8□□□□□ -1.48
TRAV1-1-201ENST00000542354 REM2Q8IYK8 340 aaPredicted RBP5.78□□□□□ -1.48
TRAV1-1-201ENST00000542354 SPDYE2BA6NHP3 402 aa5.77□□□□□ -1.49
TRAV1-1-201ENST00000542354 SPDYE6P0CI01 402 aa5.77□□□□□ -1.49
TRAV1-1-201ENST00000542354 SPDYE2Q495Y8 402 aa5.77□□□□□ -1.49
TRAV1-1-201ENST00000542354 OSCARQ8IYS5 282 aa5.77□□□□□ -1.49
TRAV1-1-201ENST00000542354 CECR2Q9BXF3 1484 aa5.77□□□□□ -1.49
TRAV1-1-201ENST00000542354 SP7Q8TDD2 431 aaPredicted RBP5.75□□□□□ -1.49
TRAV1-1-201ENST00000542354 CUX2O14529 1486 aa5.75□□□□□ -1.49
TRAV1-1-201ENST00000542354 ATF5Q9Y2D1 282 aaPredicted RBP5.73□□□□□ -1.49
TRAV1-1-201ENST00000542354 HAX1O00165 279 aa5.71□□□□□ -1.5
TRAV1-1-201ENST00000542354 PIP4P2Q8N4L2 257 aa5.71□□□□□ -1.5
TRAV1-1-201ENST00000542354 SPDYE1Q8NFV5 336 aaPredicted RBP5.71□□□□□ -1.5
TRAV1-1-201ENST00000542354 PITPNM1O00562 1244 aa5.7□□□□□ -1.5
TRAV1-1-201ENST00000542354 FXR2P51116 673 aaKnown RBP eCLIP5.68□□□□□ -1.5
TRAV1-1-201ENST00000542354 RB1CC1Q8TDY2 1594 aa5.66□□□□□ -1.5
TRAV1-1-201ENST00000542354 ZNF692Q9BU19 519 aaPredicted RBP5.64□□□□□ -1.51
TRAV1-1-201ENST00000542354 CLEC11AQ9Y240 323 aa5.63□□□□□ -1.51
TRAV1-1-201ENST00000542354 ZBTB22O15209 634 aa5.62□□□□□ -1.51
TRAV1-1-201ENST00000542354 CC2D2AQ9P2K1 1620 aa5.62□□□□□ -1.51
TRAV1-1-201ENST00000542354 PRKAR2AP13861 404 aaKnown RBP5.59□□□□□ -1.51
TRAV1-1-201ENST00000542354 SSUH2Q9Y2M2 353 aa5.59□□□□□ -1.51
TRAV1-1-201ENST00000542354 CLCN6P51797 869 aa5.58□□□□□ -1.52
TRAV1-1-201ENST00000542354 PRR29P0C7W0 189 aa5.57□□□□□ -1.52
TRAV1-1-201ENST00000542354 ERCC6Q03468 1493 aa5.52□□□□□ -1.53
TRAV1-1-201ENST00000542354 SOCS7O14512 581 aa5.52□□□□□ -1.53
TRAV1-1-201ENST00000542354 C19orf67A6NJJ6 358 aa5.51□□□□□ -1.53
TRAV1-1-201ENST00000542354 STAG3Q9UJ98 1225 aa5.51□□□□□ -1.53
TRAV1-1-201ENST00000542354 CCDC180Q9P1Z9 1646 aa5.51□□□□□ -1.53
TRAV1-1-201ENST00000542354 MKRN4PQ13434 485 aaPredicted RBP5.5□□□□□ -1.53
TRAV1-1-201ENST00000542354 BICRAQ9NZM4 1560 aa5.46□□□□□ -1.53
TRAV1-1-201ENST00000542354 LMTK3Q96Q04 1460 aa5.46□□□□□ -1.53
TRAV1-1-201ENST00000542354 NACADO15069 1562 aa5.45□□□□□ -1.54
TRAV1-1-201ENST00000542354 PAK3O75914 559 aaPredicted RBP5.44□□□□□ -1.54
TRAV1-1-201ENST00000542354 GABBR2O75899 941 aa5.43□□□□□ -1.54
TRAV1-1-201ENST00000542354 CD44P16070 742 aaKnown RBP5.43□□□□□ -1.54
TRAV1-1-201ENST00000542354 EIF4G1Q04637 1599 aaKnown RBP5.42□□□□□ -1.54
TRAV1-1-201ENST00000542354 FARP1Q9Y4F1 1045 aaPredicted RBP5.42□□□□□ -1.54
TRAV1-1-201ENST00000542354 UNC13AQ9UPW8 1703 aa5.42□□□□□ -1.54
TRAV1-1-201ENST00000542354 CHADLQ6NUI6 762 aa5.41□□□□□ -1.54
TRAV1-1-201ENST00000542354 FBXO41Q8TF61 875 aa5.41□□□□□ -1.54
TRAV1-1-201ENST00000542354 DCAF8L2P0C7V8 631 aa5.4□□□□□ -1.54
TRAV1-1-201ENST00000542354 EVX2Q03828 476 aa5.4□□□□□ -1.54
TRAV1-1-201ENST00000542354 DCBLD2Q96PD2 775 aa5.4□□□□□ -1.54
TRAV1-1-201ENST00000542354 NPM1P06748 294 aaKnown RBP eCLIP5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms