RNA–Protein interactions for RNA: ENST00000541284.5

CNOT4-212, Transcript of CCR4-NOT transcription complex subunit 4, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene CNOT4, Length 3,563 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4-212ENST00000541284 PDS5BQ9NTI5 1447 aa14.6□□□□□ -0.07
CNOT4-212ENST00000541284 MRC2Q9UBG0 1479 aa14.6□□□□□ -0.07
CNOT4-212ENST00000541284 AQRO60306 1485 aaKnown RBP eCLIP14.56□□□□□ -0.082e-7■■■■□ 23.2
CNOT4-212ENST00000541284 TIAM1Q13009 1591 aa14.55□□□□□ -0.08
CNOT4-212ENST00000541284 PCF11O94913 1555 aaKnown RBP14.55□□□□□ -0.08
CNOT4-212ENST00000541284 EIF4G3O43432 1585 aaKnown RBP14.55□□□□□ -0.08
CNOT4-212ENST00000541284 SNAPC4Q5SXM2 1469 aa14.54□□□□□ -0.08
CNOT4-212ENST00000541284 DIEXFQ68CQ4 756 aaKnown RBP14.48□□□□□ -0.09
CNOT4-212ENST00000541284 GAPVD1Q14C86 1478 aa14.47□□□□□ -0.09
CNOT4-212ENST00000541284 ARHGEF11O15085 1522 aa14.47□□□□□ -0.09
CNOT4-212ENST00000541284 CARMIL1Q5VZK9 1371 aa14.47□□□□□ -0.09
CNOT4-212ENST00000541284 RRBP1Q9P2E9 1410 aaKnown RBP14.46□□□□□ -0.09
CNOT4-212ENST00000541284 ACIN1Q9UKV3 1341 aaKnown RBP14.46□□□□□ -0.09
CNOT4-212ENST00000541284 NEUROD1Q13562 356 aa14.46□□□□□ -0.09
CNOT4-212ENST00000541284 IFT140Q96RY7 1462 aa14.45□□□□□ -0.1
CNOT4-212ENST00000541284 UGGT2Q9NYU1 1516 aa14.44□□□□□ -0.1
CNOT4-212ENST00000541284 FYCO1Q9BQS8 1478 aa14.44□□□□□ -0.1
CNOT4-212ENST00000541284 GRIN2BQ13224 1484 aa14.42□□□□□ -0.1
CNOT4-212ENST00000541284 ZNF316A6NFI3 1004 aaPredicted RBP14.39□□□□□ -0.11
CNOT4-212ENST00000541284 IQGAP2Q13576 1575 aa14.38□□□□□ -0.11
CNOT4-212ENST00000541284 HNRNPUL2Q1KMD3 747 aaKnown RBP14.37□□□□□ -0.11
CNOT4-212ENST00000541284 CEP170Q5SW79 1584 aa14.36□□□□□ -0.11
CNOT4-212ENST00000541284 ZNF608Q9ULD9 1512 aaPredicted RBP14.36□□□□□ -0.11
CNOT4-212ENST00000541284 CASKIN1Q8WXD9 1431 aa14.36□□□□□ -0.11
CNOT4-212ENST00000541284 FHAD1B1AJZ9 1412 aa14.35□□□□□ -0.11
CNOT4-212ENST00000541284 KIAA0556O60303 1618 aa14.35□□□□□ -0.11
CNOT4-212ENST00000541284 SHROOM2Q13796 1616 aa14.35□□□□□ -0.11
CNOT4-212ENST00000541284 LRRC9Q6ZRR7 1453 aa14.34□□□□□ -0.11
CNOT4-212ENST00000541284 MAGI3Q5TCQ9 1506 aa14.32□□□□□ -0.12
CNOT4-212ENST00000541284 ADCY10Q96PN6 1610 aa14.32□□□□□ -0.12
CNOT4-212ENST00000541284 DISP1Q96F81 1524 aa14.31□□□□□ -0.12
CNOT4-212ENST00000541284 MAGI1Q96QZ7 1491 aaPredicted RBP14.31□□□□□ -0.12
CNOT4-212ENST00000541284 KANK4Q5T7N3 995 aaPredicted RBP14.3□□□□□ -0.12
CNOT4-212ENST00000541284 DHX57Q6P158 1386 aaKnown RBP14.29□□□□□ -0.12
CNOT4-212ENST00000541284 GRIN2AQ12879 1464 aa14.27□□□□□ -0.13
CNOT4-212ENST00000541284 PELP1Q8IZL8 1130 aaKnown RBP14.27□□□□□ -0.13
CNOT4-212ENST00000541284 NUP160Q12769 1436 aa14.26□□□□□ -0.13
CNOT4-212ENST00000541284 RANGAP1P46060 587 aaPredicted RBP14.26□□□□□ -0.13
CNOT4-212ENST00000541284 HECW1Q76N89 1606 aa14.25□□□□□ -0.13
CNOT4-212ENST00000541284 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.25□□□□□ -0.13
CNOT4-212ENST00000541284 GTF3C3Q9Y5Q9 886 aa14.25□□□□□ -0.13
CNOT4-212ENST00000541284 CHD1O14646 1710 aa14.23□□□□□ -0.13
CNOT4-212ENST00000541284 TDRD9Q8NDG6 1382 aaKnown RBP14.23□□□□□ -0.13
CNOT4-212ENST00000541284 GCC2Q8IWJ2 1684 aa14.23□□□□□ -0.13
CNOT4-212ENST00000541284 MIER1Q8N108 512 aa14.22□□□□□ -0.13
CNOT4-212ENST00000541284 SUPT6HQ7KZ85 1726 aaKnown RBP14.22□□□□□ -0.13
CNOT4-212ENST00000541284 APLP2Q06481 763 aa14.22□□□□□ -0.13
CNOT4-212ENST00000541284 CLSPNQ9HAW4 1339 aa14.21□□□□□ -0.13
CNOT4-212ENST00000541284 KIAA0586Q9BVV6 1533 aa14.21□□□□□ -0.13
CNOT4-212ENST00000541284 CENPBP07199 599 aaPredicted RBP14.21□□□□□ -0.13
CNOT4-212ENST00000541284 EHBP1L1Q8N3D4 1523 aa14.21□□□□□ -0.13
CNOT4-212ENST00000541284 SYNJ2O15056 1496 aa14.21□□□□□ -0.14
CNOT4-212ENST00000541284 FHOD3Q2V2M9 1422 aa14.19□□□□□ -0.14
CNOT4-212ENST00000541284 RAPGEF6Q8TEU7 1601 aa14.19□□□□□ -0.14
CNOT4-212ENST00000541284 TCOF1Q13428 1488 aaKnown RBP14.19□□□□□ -0.14
CNOT4-212ENST00000541284 CROCC2H7BZ55 1655 aa14.19□□□□□ -0.14
CNOT4-212ENST00000541284 FMN1Q68DA7 1419 aa14.18□□□□□ -0.14
CNOT4-212ENST00000541284 ABCA8O94911 1581 aa14.17□□□□□ -0.14
CNOT4-212ENST00000541284 CCDC18Q5T9S5 1454 aa14.16□□□□□ -0.14
CNOT4-212ENST00000541284 MAPKBP1O60336 1514 aa14.15□□□□□ -0.14
CNOT4-212ENST00000541284 CCNB3Q8WWL7 1395 aa14.14□□□□□ -0.15
CNOT4-212ENST00000541284 PHLDB1Q86UU1 1377 aa14.13□□□□□ -0.15
CNOT4-212ENST00000541284 CLASP1Q7Z460 1538 aa14.13□□□□□ -0.15
CNOT4-212ENST00000541284 EPRSP07814 1512 aaKnown RBP14.11□□□□□ -0.15
CNOT4-212ENST00000541284 NUP153P49790 1475 aaKnown RBP14.1□□□□□ -0.15
CNOT4-212ENST00000541284 PTPN23Q9H3S7 1636 aa14.1□□□□□ -0.15
CNOT4-212ENST00000541284 CDC42BPAQ5VT25 1732 aa14.08□□□□□ -0.16
CNOT4-212ENST00000541284 YTHDC1Q96MU7 727 aaKnown RBP14.06□□□□□ -0.16
CNOT4-212ENST00000541284 DNMT1P26358 1616 aaKnown RBP14.05□□□□□ -0.16
CNOT4-212ENST00000541284 ADGBQ8N7X0 1667 aa14.05□□□□□ -0.16
CNOT4-212ENST00000541284 ITSN2Q9NZM3 1697 aa14.05□□□□□ -0.16
CNOT4-212ENST00000541284 RAB3GAP2Q9H2M9 1393 aa14.04□□□□□ -0.16
CNOT4-212ENST00000541284 AKNAQ7Z591 1439 aa14.03□□□□□ -0.16
CNOT4-212ENST00000541284 NCOA2Q15596 1464 aa14.03□□□□□ -0.16
CNOT4-212ENST00000541284 KDM5BQ9UGL1 1544 aa14.03□□□□□ -0.16
CNOT4-212ENST00000541284 DENND4BO75064 1496 aaPredicted RBP14.02□□□□□ -0.16
CNOT4-212ENST00000541284 ERCC6Q03468 1493 aa14.02□□□□□ -0.16
CNOT4-212ENST00000541284 FGD6Q6ZV73 1430 aa14.02□□□□□ -0.17
CNOT4-212ENST00000541284 CDK13Q14004 1512 aaKnown RBP14.01□□□□□ -0.17
CNOT4-212ENST00000541284 KIF14Q15058 1648 aa14.01□□□□□ -0.17
CNOT4-212ENST00000541284 PTPRKQ15262 1439 aa14.01□□□□□ -0.17
CNOT4-212ENST00000541284 KDM6BO15054 1643 aa13.99□□□□□ -0.17
CNOT4-212ENST00000541284 MYOM3Q5VTT5 1437 aa13.98□□□□□ -0.17
CNOT4-212ENST00000541284 CDC42BPBQ9Y5S2 1711 aa13.98□□□□□ -0.17
CNOT4-212ENST00000541284 SETD5Q9C0A6 1442 aa13.96□□□□□ -0.17
CNOT4-212ENST00000541284 ABCC10Q5T3U5 1492 aa13.96□□□□□ -0.17
CNOT4-212ENST00000541284 PREX2Q70Z35 1606 aa13.95□□□□□ -0.18
CNOT4-212ENST00000541284 MIA2Q96PC5 1412 aa13.94□□□□□ -0.18
CNOT4-212ENST00000541284 HFM1A2PYH4 1435 aa13.94□□□□□ -0.18
CNOT4-212ENST00000541284 ITGAEP38570 1179 aa13.91□□□□□ -0.18
CNOT4-212ENST00000541284 ERCC6L2Q5T890 1561 aa13.9□□□□□ -0.18
CNOT4-212ENST00000541284 ADGRL2O95490 1459 aa13.89□□□□□ -0.19
CNOT4-212ENST00000541284 ARHGEF5Q12774 1597 aa13.88□□□□□ -0.19
CNOT4-212ENST00000541284 MAST1Q9Y2H9 1570 aa13.88□□□□□ -0.19
CNOT4-212ENST00000541284 NAIPQ13075 1403 aa13.87□□□□□ -0.19
CNOT4-212ENST00000541284 PLB1Q6P1J6 1458 aa13.86□□□□□ -0.19
CNOT4-212ENST00000541284 P3H3Q8IVL6 736 aa13.85□□□□□ -0.19
CNOT4-212ENST00000541284 UHRF1BP1LA0JNW5 1464 aa13.85□□□□□ -0.19
CNOT4-212ENST00000541284 KDM5DQ9BY66 1539 aa13.85□□□□□ -0.19
CNOT4-212ENST00000541284 POLR1AO95602 1720 aaPredicted RBP13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 375 ms