RNA–Protein interactions for RNA: ENST00000540805.5

PROM1-220, Transcript of prominin 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene PROM1, Length 3,908 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1-220ENST00000540805 RIMBP3BA6NNM3 1639 aa7.75□□□□□ -1.17
PROM1-220ENST00000540805 RIMBP3Q9UFD9 1639 aa7.75□□□□□ -1.17
PROM1-220ENST00000540805 ARAP1Q96P48 1450 aa7.74□□□□□ -1.17
PROM1-220ENST00000540805 IGF1RP08069 1367 aa7.74□□□□□ -1.17
PROM1-220ENST00000540805 ABCA5Q8WWZ7 1642 aa7.74□□□□□ -1.17
PROM1-220ENST00000540805 TARBP1Q13395 1621 aaKnown RBP7.74□□□□□ -1.17
PROM1-220ENST00000540805 KIF27Q86VH2 1401 aa7.73□□□□□ -1.17
PROM1-220ENST00000540805 RAD54L2Q9Y4B4 1467 aa7.72□□□□□ -1.17
PROM1-220ENST00000540805 HNRNPUL2Q1KMD3 747 aaKnown RBP7.71□□□□□ -1.17
PROM1-220ENST00000540805 MYT1LQ9UL68 1186 aa7.71□□□□□ -1.17
PROM1-220ENST00000540805 CLIP1P30622 1438 aa7.71□□□□□ -1.18
PROM1-220ENST00000540805 VPS8Q8N3P4 1428 aa7.69□□□□□ -1.18
PROM1-220ENST00000540805 MIER1Q8N108 512 aa7.69□□□□□ -1.18
PROM1-220ENST00000540805 ARHGAP35Q9NRY4 1499 aa7.69□□□□□ -1.18
PROM1-220ENST00000540805 TSHZ2Q9NRE2 1034 aa7.68□□□□□ -1.18
PROM1-220ENST00000540805 CUL7Q14999 1698 aa7.68□□□□□ -1.18
PROM1-220ENST00000540805 CTTNBP2Q8WZ74 1663 aa7.66□□□□□ -1.18
PROM1-220ENST00000540805 MRC2Q9UBG0 1479 aa7.66□□□□□ -1.18
PROM1-220ENST00000540805 PBRM1Q86U86 1689 aa7.65□□□□□ -1.18
PROM1-220ENST00000540805 ITGAEP38570 1179 aa7.65□□□□□ -1.19
PROM1-220ENST00000540805 LRRIQ1Q96JM4 1722 aa7.64□□□□□ -1.19
PROM1-220ENST00000540805 PDS5BQ9NTI5 1447 aa7.64□□□□□ -1.19
PROM1-220ENST00000540805 BCANQ96GW7 911 aa7.64□□□□□ -1.19
PROM1-220ENST00000540805 ANO8Q9HCE9 1232 aaPredicted RBP7.64□□□□□ -1.19
PROM1-220ENST00000540805 CARMIL1Q5VZK9 1371 aa7.63□□□□□ -1.19
PROM1-220ENST00000540805 SUPT16HQ9Y5B9 1047 aaKnown RBP7.62□□□□□ -1.19
PROM1-220ENST00000540805 SAMD9Q5K651 1589 aa7.62□□□□□ -1.19
PROM1-220ENST00000540805 CLSPNQ9HAW4 1339 aa7.61□□□□□ -1.19
PROM1-220ENST00000540805 ARHGEF11O15085 1522 aa7.61□□□□□ -1.19
PROM1-220ENST00000540805 CFAP43Q8NDM7 1665 aa7.6□□□□□ -1.19
PROM1-220ENST00000540805 GAPVD1Q14C86 1478 aa7.59□□□□□ -1.19
PROM1-220ENST00000540805 ADAMTS12P58397 1594 aa7.59□□□□□ -1.19
PROM1-220ENST00000540805 CNGB1Q14028 1251 aaPredicted RBP7.59□□□□□ -1.2
PROM1-220ENST00000540805 PCF11O94913 1555 aaKnown RBP7.58□□□□□ -1.2
PROM1-220ENST00000540805 MAP3K1Q13233 1512 aa7.58□□□□□ -1.2
PROM1-220ENST00000540805 CCDC136Q96JN2 1154 aa7.58□□□□□ -1.2
PROM1-220ENST00000540805 TIAM1Q13009 1591 aa7.57□□□□□ -1.2
PROM1-220ENST00000540805 TDRD9Q8NDG6 1382 aaKnown RBP7.57□□□□□ -1.2
PROM1-220ENST00000540805 SNAPC4Q5SXM2 1469 aa7.57□□□□□ -1.2
PROM1-220ENST00000540805 ZNF608Q9ULD9 1512 aaPredicted RBP7.57□□□□□ -1.2
PROM1-220ENST00000540805 KANK4Q5T7N3 995 aaPredicted RBP7.56□□□□□ -1.2
PROM1-220ENST00000540805 EFCAB5A4FU69 1503 aa7.56□□□□□ -1.2
PROM1-220ENST00000540805 EIF4G3O43432 1585 aaKnown RBP7.55□□□□□ -1.2
PROM1-220ENST00000540805 POLR3GLQ9BT43 218 aa7.55□□□□□ -1.2
PROM1-220ENST00000540805 RRBP1Q9P2E9 1410 aaKnown RBP7.54□□□□□ -1.2
PROM1-220ENST00000540805 AQRO60306 1485 aaKnown RBP eCLIP7.54□□□□□ -1.2
PROM1-220ENST00000540805 FBLN2P98095 1184 aa7.53□□□□□ -1.2
PROM1-220ENST00000540805 AEBP2Q6ZN18 517 aaPredicted RBP7.53□□□□□ -1.2
PROM1-220ENST00000540805 OSCARQ8IYS5 282 aa7.52□□□□□ -1.21
PROM1-220ENST00000540805 IFT140Q96RY7 1462 aa7.52□□□□□ -1.21
PROM1-220ENST00000540805 MSH5O43196 834 aa7.51□□□□□ -1.21
PROM1-220ENST00000540805 LRRC9Q6ZRR7 1453 aa7.51□□□□□ -1.21
PROM1-220ENST00000540805 FYCO1Q9BQS8 1478 aa7.51□□□□□ -1.21
PROM1-220ENST00000540805 GRIN2BQ13224 1484 aa7.51□□□□□ -1.21
PROM1-220ENST00000540805 FHOD3Q2V2M9 1422 aa7.5□□□□□ -1.21
PROM1-220ENST00000540805 SALL2Q9Y467 1007 aaPredicted RBP7.5□□□□□ -1.21
PROM1-220ENST00000540805 FHAD1B1AJZ9 1412 aa7.5□□□□□ -1.21
PROM1-220ENST00000540805 CASKIN1Q8WXD9 1431 aa7.5□□□□□ -1.21
PROM1-220ENST00000540805 MAGI3Q5TCQ9 1506 aa7.49□□□□□ -1.21
PROM1-220ENST00000540805 KCNH8Q96L42 1107 aa7.48□□□□□ -1.21
PROM1-220ENST00000540805 UGGT2Q9NYU1 1516 aa7.48□□□□□ -1.21
PROM1-220ENST00000540805 IQGAP2Q13576 1575 aa7.48□□□□□ -1.21
PROM1-220ENST00000540805 CEP170Q5SW79 1584 aa7.48□□□□□ -1.21
PROM1-220ENST00000540805 CHD1O14646 1710 aa7.47□□□□□ -1.21
PROM1-220ENST00000540805 DISP1Q96F81 1524 aa7.47□□□□□ -1.21
PROM1-220ENST00000540805 PHLDB1Q86UU1 1377 aa7.46□□□□□ -1.21
PROM1-220ENST00000540805 RBM19Q9Y4C8 960 aaKnown RBP7.46□□□□□ -1.21
PROM1-220ENST00000540805 CLASP1Q7Z460 1538 aa7.45□□□□□ -1.22
PROM1-220ENST00000540805 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.45□□□□□ -1.22
PROM1-220ENST00000540805 GRIN2AQ12879 1464 aa7.45□□□□□ -1.22
PROM1-220ENST00000540805 KIAA0556O60303 1618 aa7.45□□□□□ -1.22
PROM1-220ENST00000540805 ARID3CA6NKF2 412 aa7.44□□□□□ -1.22
PROM1-220ENST00000540805 DHX57Q6P158 1386 aaKnown RBP7.44□□□□□ -1.22
PROM1-220ENST00000540805 RTN4Q9NQC3 1192 aaKnown RBP7.44□□□□□ -1.22
PROM1-220ENST00000540805 SLC4A1APQ9BWU0 796 aaKnown RBP7.43□□□□□ -1.22
PROM1-220ENST00000540805 MAGI1Q96QZ7 1491 aaPredicted RBP7.43□□□□□ -1.22
PROM1-220ENST00000540805 FMN1Q68DA7 1419 aa7.42□□□□□ -1.22
PROM1-220ENST00000540805 KIAA0586Q9BVV6 1533 aa7.42□□□□□ -1.22
PROM1-220ENST00000540805 NUP160Q12769 1436 aa7.41□□□□□ -1.22
PROM1-220ENST00000540805 CCNB3Q8WWL7 1395 aa7.41□□□□□ -1.22
PROM1-220ENST00000540805 FKBP8Q14318 412 aa7.41□□□□□ -1.22
PROM1-220ENST00000540805 SYNJ2O15056 1496 aa7.41□□□□□ -1.22
PROM1-220ENST00000540805 ERICH6Q7L0X2 663 aa7.41□□□□□ -1.22
PROM1-220ENST00000540805 P3H3Q8IVL6 736 aa7.4□□□□□ -1.22
PROM1-220ENST00000540805 MAPKBP1O60336 1514 aa7.4□□□□□ -1.22
PROM1-220ENST00000540805 HECW1Q76N89 1606 aa7.39□□□□□ -1.23
PROM1-220ENST00000540805 PTPRKQ15262 1439 aa7.39□□□□□ -1.23
PROM1-220ENST00000540805 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP7.39□□□□□ -1.23
PROM1-220ENST00000540805 EPRSP07814 1512 aaKnown RBP7.38□□□□□ -1.23
PROM1-220ENST00000540805 DEKP35659 375 aaKnown RBP7.38□□□□□ -1.23
PROM1-220ENST00000540805 NUP153P49790 1475 aaKnown RBP7.38□□□□□ -1.23
PROM1-220ENST00000540805 SUPT6HQ7KZ85 1726 aaKnown RBP7.38□□□□□ -1.23
PROM1-220ENST00000540805 CDK13Q14004 1512 aaKnown RBP7.38□□□□□ -1.23
PROM1-220ENST00000540805 EHBP1L1Q8N3D4 1523 aa7.38□□□□□ -1.23
PROM1-220ENST00000540805 PLPPR3Q6T4P5 718 aa7.37□□□□□ -1.23
PROM1-220ENST00000540805 SHROOM2Q13796 1616 aa7.37□□□□□ -1.23
PROM1-220ENST00000540805 RAPGEF6Q8TEU7 1601 aa7.37□□□□□ -1.23
PROM1-220ENST00000540805 KIF13AQ9H1H9 1805 aa7.37□□□□□ -1.23
PROM1-220ENST00000540805 NCOA2Q15596 1464 aa7.36□□□□□ -1.23
PROM1-220ENST00000540805 TCOF1Q13428 1488 aaKnown RBP7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms