RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 CCER2I3L3R5 266 aa17.92■□□□□ 0.46
SFSWAP-209ENST00000540469 ATP1B4Q9UN42 357 aaPredicted RBP17.9■□□□□ 0.46
SFSWAP-209ENST00000540469 ARAP1Q96P48 1450 aa17.89■□□□□ 0.45
SFSWAP-209ENST00000540469 PPP1R15AO75807 674 aaPredicted RBP17.89■□□□□ 0.45
SFSWAP-209ENST00000540469 FANCIQ9NVI1 1328 aa17.87■□□□□ 0.45
SFSWAP-209ENST00000540469 WDR97A6NE52 1622 aa17.85■□□□□ 0.45
SFSWAP-209ENST00000540469 SETD5Q9C0A6 1442 aa17.83■□□□□ 0.44
SFSWAP-209ENST00000540469 CCDC136Q96JN2 1154 aa17.82■□□□□ 0.44
SFSWAP-209ENST00000540469 DEKP35659 375 aaKnown RBP17.81■□□□□ 0.44
SFSWAP-209ENST00000540469 MYT1LQ9UL68 1186 aa17.81■□□□□ 0.44
SFSWAP-209ENST00000540469 CUX2O14529 1486 aa17.8■□□□□ 0.44
SFSWAP-209ENST00000540469 MAPKBP1O60336 1514 aa17.79■□□□□ 0.44
SFSWAP-209ENST00000540469 NBR1Q14596 966 aa17.79■□□□□ 0.44
SFSWAP-209ENST00000540469 TONSLQ96HA7 1378 aa17.78■□□□□ 0.44
SFSWAP-209ENST00000540469 CC2D2AQ9P2K1 1620 aa17.76■□□□□ 0.43
SFSWAP-209ENST00000540469 TIMELESSQ9UNS1 1208 aa17.73■□□□□ 0.43
SFSWAP-209ENST00000540469 ERICH3Q5RHP9 1530 aa17.72■□□□□ 0.43
SFSWAP-209ENST00000540469 PRXQ9BXM0 1461 aa17.72■□□□□ 0.43
SFSWAP-209ENST00000540469 PPP4R2Q9NY27 417 aa17.72■□□□□ 0.43
SFSWAP-209ENST00000540469 B4GALNT3Q6L9W6 998 aa17.71■□□□□ 0.43
SFSWAP-209ENST00000540469 SALL2Q9Y467 1007 aaPredicted RBP17.7■□□□□ 0.42
SFSWAP-209ENST00000540469 RTN4Q9NQC3 1192 aaKnown RBP17.69■□□□□ 0.42
SFSWAP-209ENST00000540469 P3H3Q8IVL6 736 aa17.68■□□□□ 0.42
SFSWAP-209ENST00000540469 KIF27Q86VH2 1401 aa17.68■□□□□ 0.42
SFSWAP-209ENST00000540469 RTL5Q5HYW3 569 aaPredicted RBP17.67■□□□□ 0.42
SFSWAP-209ENST00000540469 ARHGAP35Q9NRY4 1499 aa17.66■□□□□ 0.42
SFSWAP-209ENST00000540469 FAM9BQ8IZU0 186 aa17.66■□□□□ 0.42
SFSWAP-209ENST00000540469 NOP58Q9Y2X3 529 aaKnown RBP17.66■□□□□ 0.42
SFSWAP-209ENST00000540469 TOP2BQ02880 1626 aa17.66■□□□□ 0.42
SFSWAP-209ENST00000540469 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.64■□□□□ 0.41
SFSWAP-209ENST00000540469 PHLDB1Q86UU1 1377 aa17.62■□□□□ 0.41
SFSWAP-209ENST00000540469 NCAPD3P42695 1498 aa17.62■□□□□ 0.41
SFSWAP-209ENST00000540469 ERICH6BQ5W0A0 696 aa17.6■□□□□ 0.41
SFSWAP-209ENST00000540469 CNGB1Q14028 1251 aaPredicted RBP17.59■□□□□ 0.41
SFSWAP-209ENST00000540469 ANP32AP39687 249 aaKnown RBP17.58■□□□□ 0.4
SFSWAP-209ENST00000540469 MRS2Q9HD23 443 aa17.56■□□□□ 0.4
SFSWAP-209ENST00000540469 NESP48681 1621 aa17.55■□□□□ 0.4
SFSWAP-209ENST00000540469 LRRC9Q6ZRR7 1453 aa17.54■□□□□ 0.4
SFSWAP-209ENST00000540469 TIAM1Q13009 1591 aa17.54■□□□□ 0.4
SFSWAP-209ENST00000540469 PAK3O75914 559 aaPredicted RBP17.54■□□□□ 0.4
SFSWAP-209ENST00000540469 PEG3Q9GZU2 1588 aa17.53■□□□□ 0.4
SFSWAP-209ENST00000540469 ZBTB47Q9UFB7 747 aaPredicted RBP17.51■□□□□ 0.39
SFSWAP-209ENST00000540469 HSPA5P11021 654 aaKnown RBP17.5■□□□□ 0.39
SFSWAP-209ENST00000540469 CCDC184Q52MB2 194 aa17.48■□□□□ 0.39
SFSWAP-209ENST00000540469 BIVM-ERCC5R4GMW8 1640 aa17.48■□□□□ 0.39
SFSWAP-209ENST00000540469 IL27Q8NEV9 243 aa17.48■□□□□ 0.39
SFSWAP-209ENST00000540469 EIF4G2P78344 907 aaKnown RBP eCLIP17.47■□□□□ 0.39
SFSWAP-209ENST00000540469 WASHC2AQ641Q2 1341 aa17.46■□□□□ 0.39
SFSWAP-209ENST00000540469 FHAD1B1AJZ9 1412 aa17.46■□□□□ 0.39
SFSWAP-209ENST00000540469 NPM2Q86SE8 214 aaKnown RBP17.45■□□□□ 0.38
SFSWAP-209ENST00000540469 POLR3GLQ9BT43 218 aa17.44■□□□□ 0.38
SFSWAP-209ENST00000540469 CUX1P39880 1505 aa17.43■□□□□ 0.38
SFSWAP-209ENST00000540469 SENP3-EIF4A1A0A087X0R7 540 aa17.42■□□□□ 0.38
SFSWAP-209ENST00000540469 CCDC18Q5T9S5 1454 aa17.42■□□□□ 0.38
SFSWAP-209ENST00000540469 IPO9Q96P70 1041 aaKnown RBP17.42■□□□□ 0.38
SFSWAP-209ENST00000540469 HMGXB3Q12766 1538 aa17.41■□□□□ 0.38
SFSWAP-209ENST00000540469 CARMIL1Q5VZK9 1371 aa17.41■□□□□ 0.38
SFSWAP-209ENST00000540469 CADPSQ9ULU8 1353 aa17.4■□□□□ 0.38
SFSWAP-209ENST00000540469 ZBED9Q6R2W3 1325 aa17.4■□□□□ 0.38
SFSWAP-209ENST00000540469 MAP3K1Q13233 1512 aa17.4■□□□□ 0.38
SFSWAP-209ENST00000540469 PRKRIP1Q9H875 184 aaPredicted RBP17.39■□□□□ 0.37
SFSWAP-209ENST00000540469 IGF1RP08069 1367 aa17.37■□□□□ 0.37
SFSWAP-209ENST00000540469 MTUS2Q5JR59 1369 aa17.37■□□□□ 0.37
SFSWAP-209ENST00000540469 CHIC2Q9UKJ5 165 aa17.37■□□□□ 0.37
SFSWAP-209ENST00000540469 RRP7BPQ9NSQ0 103 aa17.36■□□□□ 0.37
SFSWAP-209ENST00000540469 UACAQ9BZF9 1416 aa17.36■□□□□ 0.37
SFSWAP-209ENST00000540469 EIF5BO60841 1220 aaKnown RBP17.35■□□□□ 0.37
SFSWAP-209ENST00000540469 FHOD3Q2V2M9 1422 aa17.35■□□□□ 0.37
SFSWAP-209ENST00000540469 CNTLNQ9NXG0 1405 aa17.34■□□□□ 0.37
SFSWAP-209ENST00000540469 LAS1LQ9Y4W2 734 aaKnown RBP17.34■□□□□ 0.37
SFSWAP-209ENST00000540469 PCF11O94913 1555 aaKnown RBP17.3■□□□□ 0.36
SFSWAP-209ENST00000540469 FGD6Q6ZV73 1430 aa17.3■□□□□ 0.36
SFSWAP-209ENST00000540469 AKNAQ7Z591 1439 aa17.3■□□□□ 0.36
SFSWAP-209ENST00000540469 NEFMP07197 916 aa17.3■□□□□ 0.36
SFSWAP-209ENST00000540469 CFTRP13569 1480 aa17.28■□□□□ 0.36
SFSWAP-209ENST00000540469 NUDCQ9Y266 331 aa17.27■□□□□ 0.35
SFSWAP-209ENST00000540469 FMN1Q68DA7 1419 aa17.27■□□□□ 0.35
SFSWAP-209ENST00000540469 C11orf95C9JLR9 678 aaPredicted RBP17.26■□□□□ 0.35
SFSWAP-209ENST00000540469 HFM1A2PYH4 1435 aa17.26■□□□□ 0.35
SFSWAP-209ENST00000540469 CCDC7Q96M83 1385 aa17.26■□□□□ 0.35
SFSWAP-209ENST00000540469 L3MBTL2Q969R5 705 aa17.26■□□□□ 0.35
SFSWAP-209ENST00000540469 FOXD1Q16676 465 aa17.25■□□□□ 0.35
SFSWAP-209ENST00000540469 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.25■□□□□ 0.35
SFSWAP-209ENST00000540469 FANCD2Q9BXW9 1451 aa17.25■□□□□ 0.35
SFSWAP-209ENST00000540469 CFAP43Q8NDM7 1665 aa17.22■□□□□ 0.35
SFSWAP-209ENST00000540469 PTPRKQ15262 1439 aa17.22■□□□□ 0.35
SFSWAP-209ENST00000540469 ZNF326Q5BKZ1 582 aaKnown RBP17.22■□□□□ 0.35
SFSWAP-209ENST00000540469 NAIPQ13075 1403 aa17.21■□□□□ 0.35
SFSWAP-209ENST00000540469 AQRO60306 1485 aaKnown RBP eCLIP17.21■□□□□ 0.346e-7■□□□□ 11
SFSWAP-209ENST00000540469 FYCO1Q9BQS8 1478 aa17.2■□□□□ 0.34
SFSWAP-209ENST00000540469 PTPN23Q9H3S7 1636 aa17.2■□□□□ 0.34
SFSWAP-209ENST00000540469 TMC1Q8TDI8 760 aa17.19■□□□□ 0.34
SFSWAP-209ENST00000540469 SMG6Q86US8 1419 aaKnown RBP17.18■□□□□ 0.34
SFSWAP-209ENST00000540469 CASKIN1Q8WXD9 1431 aa17.18■□□□□ 0.34
SFSWAP-209ENST00000540469 KIF7Q2M1P5 1343 aa17.18■□□□□ 0.34
SFSWAP-209ENST00000540469 NCOA2Q15596 1464 aa17.17■□□□□ 0.34
SFSWAP-209ENST00000540469 MPHOSPH9Q99550 1183 aa17.17■□□□□ 0.34
SFSWAP-209ENST00000540469 ERCC6Q03468 1493 aa17.16■□□□□ 0.34
SFSWAP-209ENST00000540469 DAXXQ9UER7 740 aaPredicted RBP17.16■□□□□ 0.34
SFSWAP-209ENST00000540469 PPM1GO15355 546 aaPredicted RBP17.14■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms