RNA–Protein interactions for RNA: ENST00000538696.5

CLN6-202, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2 BASIC

Gene CLN6, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-202ENST00000538696 EHMT2Q96KQ7 1210 aa28.16■■■□□ 2.1
CLN6-202ENST00000538696 KIAA0586Q9BVV6 1533 aa28.15■■■□□ 2.1
CLN6-202ENST00000538696 IQGAP2Q13576 1575 aa28.14■■■□□ 2.09
CLN6-202ENST00000538696 SHROOM2Q13796 1616 aa28.11■■■□□ 2.09
CLN6-202ENST00000538696 UBTFP17480 764 aaKnown RBP28.02■■■□□ 2.08
CLN6-202ENST00000538696 UGGT2Q9NYU1 1516 aa27.99■■■□□ 2.07
CLN6-202ENST00000538696 LOC105371045A0A1W2PR82 267 aa27.98■■■□□ 2.07
CLN6-202ENST00000538696 TNIKQ9UKE5 1360 aa27.96■■■□□ 2.07
CLN6-202ENST00000538696 JPH4Q96JJ6 628 aa27.94■■■□□ 2.06
CLN6-202ENST00000538696 ERCC6L2Q5T890 1561 aa27.93■■■□□ 2.06
CLN6-202ENST00000538696 PRG4Q92954 1404 aaPredicted RBP27.9■■■□□ 2.06
CLN6-202ENST00000538696 SAMD9Q5K651 1589 aa27.9■■■□□ 2.06
CLN6-202ENST00000538696 ARHGEF11O15085 1522 aa27.89■■■□□ 2.06
CLN6-202ENST00000538696 KIAA0556O60303 1618 aa27.89■■■□□ 2.06
CLN6-202ENST00000538696 DISP1Q96F81 1524 aa27.88■■■□□ 2.05
CLN6-202ENST00000538696 RIMBP3CA6NJZ7 1639 aa27.87■■■□□ 2.05
CLN6-202ENST00000538696 RIMBP3BA6NNM3 1639 aa27.87■■■□□ 2.05
CLN6-202ENST00000538696 RIMBP3Q9UFD9 1639 aa27.87■■■□□ 2.05
CLN6-202ENST00000538696 EFCAB5A4FU69 1503 aa27.83■■■□□ 2.05
CLN6-202ENST00000538696 CARMIL2Q6F5E8 1435 aa27.8■■■□□ 2.04
CLN6-202ENST00000538696 RANGAP1P46060 587 aaPredicted RBP27.8■■■□□ 2.04
CLN6-202ENST00000538696 DNAJC5Q9H3Z4 198 aa27.8■■■□□ 2.04
CLN6-202ENST00000538696 CEP162Q5TB80 1403 aa27.77■■■□□ 2.04
CLN6-202ENST00000538696 ARHGAP35Q9NRY4 1499 aa27.77■■■□□ 2.04
CLN6-202ENST00000538696 CLIP1P30622 1438 aa27.73■■■□□ 2.03
CLN6-202ENST00000538696 ARAP1Q96P48 1450 aa27.72■■■□□ 2.03
CLN6-202ENST00000538696 FHOD3Q2V2M9 1422 aa27.7■■■□□ 2.02
CLN6-202ENST00000538696 P3H3Q8IVL6 736 aa27.67■■■□□ 2.02
CLN6-202ENST00000538696 PTPRGP23470 1445 aa27.6■■■□□ 2.01
CLN6-202ENST00000538696 TTBK1Q5TCY1 1321 aaPredicted RBP27.57■■■□□ 2
CLN6-202ENST00000538696 ABCA8O94911 1581 aa27.54■■■□□ 2
CLN6-202ENST00000538696 PLB1Q6P1J6 1458 aa27.51■■□□□ 1.99
CLN6-202ENST00000538696 RAPGEF6Q8TEU7 1601 aa27.5■■□□□ 1.99
CLN6-202ENST00000538696 FMN1Q68DA7 1419 aa27.5■■□□□ 1.99
CLN6-202ENST00000538696 ADCY10Q96PN6 1610 aa27.5■■□□□ 1.99
CLN6-202ENST00000538696 CYB5RLQ6IPT4 315 aa27.48■■□□□ 1.99
CLN6-202ENST00000538696 UACAQ9BZF9 1416 aa27.47■■□□□ 1.99
CLN6-202ENST00000538696 PCF11O94913 1555 aaKnown RBP27.47■■□□□ 1.99
CLN6-202ENST00000538696 ABCC2Q92887 1545 aa27.47■■□□□ 1.99
CLN6-202ENST00000538696 UHRF1BP1LA0JNW5 1464 aa27.44■■□□□ 1.98
CLN6-202ENST00000538696 HECW1Q76N89 1606 aa27.4■■□□□ 1.98
CLN6-202ENST00000538696 VPS8Q8N3P4 1428 aa27.39■■□□□ 1.97
CLN6-202ENST00000538696 LRRIQ1Q96JM4 1722 aa27.38■■□□□ 1.97
CLN6-202ENST00000538696 CASKIN1Q8WXD9 1431 aa27.37■■□□□ 1.97
CLN6-202ENST00000538696 NUP153P49790 1475 aaKnown RBP27.37■■□□□ 1.97
CLN6-202ENST00000538696 FYCO1Q9BQS8 1478 aa27.37■■□□□ 1.97
CLN6-202ENST00000538696 ZCCHC11Q5TAX3 1644 aaKnown RBP27.34■■□□□ 1.97
CLN6-202ENST00000538696 KDM5BQ9UGL1 1544 aa27.31■■□□□ 1.96
CLN6-202ENST00000538696 CDK13Q14004 1512 aaKnown RBP27.27■■□□□ 1.96
CLN6-202ENST00000538696 EPRSP07814 1512 aaKnown RBP27.26■■□□□ 1.95
CLN6-202ENST00000538696 ATP10BO94823 1461 aa27.25■■□□□ 1.95
CLN6-202ENST00000538696 ARID3CA6NKF2 412 aa27.22■■□□□ 1.95
CLN6-202ENST00000538696 CFAP43Q8NDM7 1665 aa27.22■■□□□ 1.95
CLN6-202ENST00000538696 CCDC18Q5T9S5 1454 aa27.22■■□□□ 1.95
CLN6-202ENST00000538696 ATP1B4Q9UN42 357 aaPredicted RBP27.21■■□□□ 1.95
CLN6-202ENST00000538696 MAPKBP1O60336 1514 aa27.18■■□□□ 1.94
CLN6-202ENST00000538696 NPM1P06748 294 aaKnown RBP eCLIP27.15■■□□□ 1.94
CLN6-202ENST00000538696 TIAM1Q13009 1591 aa27.14■■□□□ 1.94
CLN6-202ENST00000538696 ASXL2Q76L83 1435 aa27.1■■□□□ 1.93
CLN6-202ENST00000538696 MAP3K1Q13233 1512 aa27.09■■□□□ 1.93
CLN6-202ENST00000538696 MAGI3Q5TCQ9 1506 aa27.09■■□□□ 1.93
CLN6-202ENST00000538696 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.09■■□□□ 1.93
CLN6-202ENST00000538696 HNRNPUL2Q1KMD3 747 aaKnown RBP27.09■■□□□ 1.93
CLN6-202ENST00000538696 WDR7Q9Y4E6 1490 aa27.07■■□□□ 1.92
CLN6-202ENST00000538696 TROQ12816 1431 aaPredicted RBP27■■□□□ 1.91
CLN6-202ENST00000538696 EHBP1L1Q8N3D4 1523 aa27■■□□□ 1.91
CLN6-202ENST00000538696 DIP2BQ9P265 1576 aa27■■□□□ 1.91
CLN6-202ENST00000538696 KIF13AQ9H1H9 1805 aa26.99■■□□□ 1.91
CLN6-202ENST00000538696 KIF14Q15058 1648 aa26.98■■□□□ 1.91
CLN6-202ENST00000538696 PLEKHD1A6NEE1 506 aa26.97■■□□□ 1.91
CLN6-202ENST00000538696 LRRC9Q6ZRR7 1453 aa26.97■■□□□ 1.91
CLN6-202ENST00000538696 CDK11AQ9UQ88 783 aaPredicted RBP26.96■■□□□ 1.91
CLN6-202ENST00000538696 ABCC10Q5T3U5 1492 aa26.95■■□□□ 1.9
CLN6-202ENST00000538696 APLP2Q06481 763 aa26.94■■□□□ 1.9
CLN6-202ENST00000538696 MTUS2Q5JR59 1369 aa26.94■■□□□ 1.9
CLN6-202ENST00000538696 GLI2P10070 1586 aa26.92■■□□□ 1.9
CLN6-202ENST00000538696 KANK4Q5T7N3 995 aaPredicted RBP26.9■■□□□ 1.9
CLN6-202ENST00000538696 ABCA9Q8IUA7 1624 aa26.9■■□□□ 1.9
CLN6-202ENST00000538696 SUPT6HQ7KZ85 1726 aaKnown RBP26.9■■□□□ 1.9
CLN6-202ENST00000538696 TTC37Q6PGP7 1564 aa26.9■■□□□ 1.9
CLN6-202ENST00000538696 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.89■■□□□ 1.892e-6■■■■□ 19.9
CLN6-202ENST00000538696 KCNH8Q96L42 1107 aa26.88■■□□□ 1.89
CLN6-202ENST00000538696 MAP3K4Q9Y6R4 1608 aa26.86■■□□□ 1.89
CLN6-202ENST00000538696 MYO5CQ9NQX4 1742 aa26.81■■□□□ 1.88
CLN6-202ENST00000538696 NCOA2Q15596 1464 aa26.81■■□□□ 1.88
CLN6-202ENST00000538696 FAM69CQ0P6D2 419 aa26.8■■□□□ 1.88
CLN6-202ENST00000538696 CDC42BPAQ5VT25 1732 aa26.79■■□□□ 1.88
CLN6-202ENST00000538696 TSPOAP1O95153 1857 aa26.78■■□□□ 1.88
CLN6-202ENST00000538696 PPRC1Q5VV67 1664 aaKnown RBP26.78■■□□□ 1.88
CLN6-202ENST00000538696 PREX2Q70Z35 1606 aa26.76■■□□□ 1.87
CLN6-202ENST00000538696 CDC42BPBQ9Y5S2 1711 aa26.74■■□□□ 1.87
CLN6-202ENST00000538696 ITSN2Q9NZM3 1697 aa26.74■■□□□ 1.87
CLN6-202ENST00000538696 PPARGC1BQ86YN6 1023 aaKnown RBP26.74■■□□□ 1.87
CLN6-202ENST00000538696 CD109Q6YHK3 1445 aa26.72■■□□□ 1.87
CLN6-202ENST00000538696 TRHP20396 242 aaPredicted RBP26.72■■□□□ 1.87
CLN6-202ENST00000538696 GPATCH8Q9UKJ3 1502 aaKnown RBP26.69■■□□□ 1.86
CLN6-202ENST00000538696 ARAP3Q8WWN8 1544 aa26.69■■□□□ 1.86
CLN6-202ENST00000538696 CCNB3Q8WWL7 1395 aa26.68■■□□□ 1.86
CLN6-202ENST00000538696 PLCH2O75038 1416 aa26.66■■□□□ 1.86
CLN6-202ENST00000538696 PHLDB1Q86UU1 1377 aa26.66■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms