RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 ATP1B4Q9UN42 357 aaPredicted RBP20.49■□□□□ 0.87
LIG1-203ENST00000536218 TDRD9Q8NDG6 1382 aaKnown RBP20.48■□□□□ 0.87
LIG1-203ENST00000536218 ARHGAP35Q9NRY4 1499 aa20.47■□□□□ 0.87
LIG1-203ENST00000536218 PDS5BQ9NTI5 1447 aa20.47■□□□□ 0.87
LIG1-203ENST00000536218 TSHZ2Q9NRE2 1034 aa20.46■□□□□ 0.87
LIG1-203ENST00000536218 LAMC3Q9Y6N6 1575 aa20.46■□□□□ 0.87
LIG1-203ENST00000536218 URB2Q14146 1524 aaKnown RBP20.46■□□□□ 0.87
LIG1-203ENST00000536218 SUPT16HQ9Y5B9 1047 aaKnown RBP20.42■□□□□ 0.86
LIG1-203ENST00000536218 ABCA10Q8WWZ4 1543 aa20.41■□□□□ 0.86
LIG1-203ENST00000536218 ITGAEP38570 1179 aa20.36■□□□□ 0.85
LIG1-203ENST00000536218 KIF21AQ7Z4S6 1674 aa20.3■□□□□ 0.84
LIG1-203ENST00000536218 GAPVD1Q14C86 1478 aa20.27■□□□□ 0.84
LIG1-203ENST00000536218 FHOD3Q2V2M9 1422 aa20.27■□□□□ 0.84
LIG1-203ENST00000536218 AQRO60306 1485 aaKnown RBP eCLIP20.2■□□□□ 0.822e-7■■■■■ 34
LIG1-203ENST00000536218 FHAD1B1AJZ9 1412 aa20.17■□□□□ 0.82
LIG1-203ENST00000536218 CCNB3Q8WWL7 1395 aa20.16■□□□□ 0.82
LIG1-203ENST00000536218 BCANQ96GW7 911 aa20.16■□□□□ 0.82
LIG1-203ENST00000536218 CUL7Q14999 1698 aa20.16■□□□□ 0.82
LIG1-203ENST00000536218 FAM50AQ14320 339 aaKnown RBP20.16■□□□□ 0.82
LIG1-203ENST00000536218 CLSPNQ9HAW4 1339 aa20.15■□□□□ 0.82
LIG1-203ENST00000536218 WDR97A6NE52 1622 aa20.13■□□□□ 0.81
LIG1-203ENST00000536218 ABCA5Q8WWZ7 1642 aa20.13■□□□□ 0.81
LIG1-203ENST00000536218 MRC2Q9UBG0 1479 aa20.12■□□□□ 0.81
LIG1-203ENST00000536218 RRBP1Q9P2E9 1410 aaKnown RBP20.11■□□□□ 0.81
LIG1-203ENST00000536218 TIAM1Q13009 1591 aa20.11■□□□□ 0.81
LIG1-203ENST00000536218 LRRC9Q6ZRR7 1453 aa20.09■□□□□ 0.81
LIG1-203ENST00000536218 PCF11O94913 1555 aaKnown RBP20.09■□□□□ 0.81
LIG1-203ENST00000536218 TARBP1Q13395 1621 aaKnown RBP20.08■□□□□ 0.81
LIG1-203ENST00000536218 PHLDB1Q86UU1 1377 aa20.08■□□□□ 0.8
LIG1-203ENST00000536218 ERCC6Q03468 1493 aa20.07■□□□□ 0.8
LIG1-203ENST00000536218 ERICH6Q7L0X2 663 aa20.06■□□□□ 0.8
LIG1-203ENST00000536218 ARID3CA6NKF2 412 aa20.06■□□□□ 0.8
LIG1-203ENST00000536218 ZNF608Q9ULD9 1512 aaPredicted RBP20.05■□□□□ 0.8
LIG1-203ENST00000536218 CTTNBP2Q8WZ74 1663 aa20.04■□□□□ 0.8
LIG1-203ENST00000536218 EFCAB5A4FU69 1503 aa20.03■□□□□ 0.8
LIG1-203ENST00000536218 FMN1Q68DA7 1419 aa20.02■□□□□ 0.79
LIG1-203ENST00000536218 CASKIN1Q8WXD9 1431 aa20.01■□□□□ 0.79
LIG1-203ENST00000536218 DHX57Q6P158 1386 aaKnown RBP20.01■□□□□ 0.79
LIG1-203ENST00000536218 FBLN2P98095 1184 aa20■□□□□ 0.79
LIG1-203ENST00000536218 MAP3K1Q13233 1512 aa20■□□□□ 0.79
LIG1-203ENST00000536218 MTUS2Q5JR59 1369 aa19.98■□□□□ 0.79
LIG1-203ENST00000536218 FYCO1Q9BQS8 1478 aa19.98■□□□□ 0.79
LIG1-203ENST00000536218 RBM19Q9Y4C8 960 aaKnown RBP19.97■□□□□ 0.79
LIG1-203ENST00000536218 GRIN2BQ13224 1484 aa19.96■□□□□ 0.79
LIG1-203ENST00000536218 IFT140Q96RY7 1462 aa19.94■□□□□ 0.78
LIG1-203ENST00000536218 RAB3GAP2Q9H2M9 1393 aa19.93■□□□□ 0.78
LIG1-203ENST00000536218 PBRM1Q86U86 1689 aa19.92■□□□□ 0.78
LIG1-203ENST00000536218 SNAPC4Q5SXM2 1469 aa19.9■□□□□ 0.78
LIG1-203ENST00000536218 CHMP7Q8WUX9 453 aaPredicted RBP19.89■□□□□ 0.78
LIG1-203ENST00000536218 WDR62O43379 1518 aa19.89■□□□□ 0.78
LIG1-203ENST00000536218 CFAP43Q8NDM7 1665 aa19.89■□□□□ 0.77
LIG1-203ENST00000536218 FKBP8Q14318 412 aa19.89■□□□□ 0.77
LIG1-203ENST00000536218 SAMD9Q5K651 1589 aa19.87■□□□□ 0.77
LIG1-203ENST00000536218 ADAMTS12P58397 1594 aa19.87■□□□□ 0.77
LIG1-203ENST00000536218 SETD5Q9C0A6 1442 aa19.85■□□□□ 0.77
LIG1-203ENST00000536218 IQGAP2Q13576 1575 aa19.84■□□□□ 0.77
LIG1-203ENST00000536218 ANO8Q9HCE9 1232 aaPredicted RBP19.82■□□□□ 0.76
LIG1-203ENST00000536218 MSH5O43196 834 aa19.81■□□□□ 0.76
LIG1-203ENST00000536218 FGD6Q6ZV73 1430 aa19.79■□□□□ 0.76
LIG1-203ENST00000536218 SIN3AQ96ST3 1273 aa19.78■□□□□ 0.76
LIG1-203ENST00000536218 EIF4G3O43432 1585 aaKnown RBP19.77■□□□□ 0.76
LIG1-203ENST00000536218 NCOA2Q15596 1464 aa19.77■□□□□ 0.76
LIG1-203ENST00000536218 CHIC2Q9UKJ5 165 aa19.76■□□□□ 0.75
LIG1-203ENST00000536218 GRIN2AQ12879 1464 aa19.74■□□□□ 0.75
LIG1-203ENST00000536218 LRRIQ1Q96JM4 1722 aa19.74■□□□□ 0.75
LIG1-203ENST00000536218 KIAA0586Q9BVV6 1533 aa19.73■□□□□ 0.75
LIG1-203ENST00000536218 CDK13Q14004 1512 aaKnown RBP19.73■□□□□ 0.75
LIG1-203ENST00000536218 THOC2Q8NI27 1593 aaKnown RBP19.72■□□□□ 0.75
LIG1-203ENST00000536218 NEFLP07196 543 aa19.71■□□□□ 0.75
LIG1-203ENST00000536218 MYOM3Q5VTT5 1437 aa19.71■□□□□ 0.75
LIG1-203ENST00000536218 KCNH8Q96L42 1107 aa19.71■□□□□ 0.75
LIG1-203ENST00000536218 MAGI3Q5TCQ9 1506 aa19.7■□□□□ 0.74
LIG1-203ENST00000536218 RRP7BPQ9NSQ0 103 aa19.7■□□□□ 0.74
LIG1-203ENST00000536218 EPRSP07814 1512 aaKnown RBP19.7■□□□□ 0.74
LIG1-203ENST00000536218 PTPRKQ15262 1439 aa19.69■□□□□ 0.74
LIG1-203ENST00000536218 JPH4Q96JJ6 628 aa19.68■□□□□ 0.74
LIG1-203ENST00000536218 DEKP35659 375 aaKnown RBP19.68■□□□□ 0.74
LIG1-203ENST00000536218 UGGT2Q9NYU1 1516 aa19.67■□□□□ 0.74
LIG1-203ENST00000536218 CCDC18Q5T9S5 1454 aa19.66■□□□□ 0.74
LIG1-203ENST00000536218 DISP1Q96F81 1524 aa19.66■□□□□ 0.74
LIG1-203ENST00000536218 EHBP1L1Q8N3D4 1523 aa19.66■□□□□ 0.74
LIG1-203ENST00000536218 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.66■□□□□ 0.74
LIG1-203ENST00000536218 MAPKBP1O60336 1514 aa19.65■□□□□ 0.74
LIG1-203ENST00000536218 HECW1Q76N89 1606 aa19.65■□□□□ 0.74
LIG1-203ENST00000536218 SYNJ2O15056 1496 aa19.64■□□□□ 0.74
LIG1-203ENST00000536218 MAGI1Q96QZ7 1491 aaPredicted RBP19.64■□□□□ 0.74
LIG1-203ENST00000536218 SUPT6HQ7KZ85 1726 aaKnown RBP19.64■□□□□ 0.74
LIG1-203ENST00000536218 KIAA0556O60303 1618 aa19.6■□□□□ 0.73
LIG1-203ENST00000536218 CDK11AQ9UQ88 783 aaPredicted RBP19.6■□□□□ 0.73
LIG1-203ENST00000536218 TRIM52Q96A61 297 aa19.59■□□□□ 0.73
LIG1-203ENST00000536218 CEP170Q5SW79 1584 aa19.59■□□□□ 0.73
LIG1-203ENST00000536218 ZNF644Q9H582 1327 aaPredicted RBP19.58■□□□□ 0.72
LIG1-203ENST00000536218 PLB1Q6P1J6 1458 aa19.57■□□□□ 0.72
LIG1-203ENST00000536218 CCDC136Q96JN2 1154 aa19.56■□□□□ 0.72
LIG1-203ENST00000536218 PTPN23Q9H3S7 1636 aa19.56■□□□□ 0.72
LIG1-203ENST00000536218 SALL2Q9Y467 1007 aaPredicted RBP19.56■□□□□ 0.72
LIG1-203ENST00000536218 NUP153P49790 1475 aaKnown RBP19.56■□□□□ 0.72
LIG1-203ENST00000536218 ZNF777Q9ULD5 760 aaPredicted RBP19.56■□□□□ 0.72
LIG1-203ENST00000536218 HFM1A2PYH4 1435 aa19.54■□□□□ 0.72
LIG1-203ENST00000536218 NAIPQ13075 1403 aa19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms