RNA–Protein interactions for RNA: ENST00000527046.5

NEDD8-205, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 847 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-205ENST00000527046 SHROOM2Q13796 1616 aa17.83■□□□□ 0.45
NEDD8-205ENST00000527046 JPH4Q96JJ6 628 aa17.82■□□□□ 0.44
NEDD8-205ENST00000527046 ERCC6L2Q5T890 1561 aa17.79■□□□□ 0.44
NEDD8-205ENST00000527046 ARHGEF11O15085 1522 aa17.77■□□□□ 0.43
NEDD8-205ENST00000527046 EHMT2Q96KQ7 1210 aa17.76■□□□□ 0.43
NEDD8-205ENST00000527046 IQGAP2Q13576 1575 aa17.75■□□□□ 0.43
NEDD8-205ENST00000527046 CTTNBP2Q8WZ74 1663 aa17.75■□□□□ 0.43
NEDD8-205ENST00000527046 RIMBP3CA6NJZ7 1639 aa17.75■□□□□ 0.43
NEDD8-205ENST00000527046 RIMBP3BA6NNM3 1639 aa17.75■□□□□ 0.43
NEDD8-205ENST00000527046 RIMBP3Q9UFD9 1639 aa17.75■□□□□ 0.43
NEDD8-205ENST00000527046 GOLGA3Q08378 1498 aa17.75■□□□□ 0.43
NEDD8-205ENST00000527046 PRG4Q92954 1404 aaPredicted RBP17.73■□□□□ 0.43
NEDD8-205ENST00000527046 LOC105371045A0A1W2PR82 267 aa17.72■□□□□ 0.43
NEDD8-205ENST00000527046 UGGT2Q9NYU1 1516 aa17.72■□□□□ 0.43
NEDD8-205ENST00000527046 DISP1Q96F81 1524 aa17.71■□□□□ 0.43
NEDD8-205ENST00000527046 UBTFP17480 764 aaKnown RBP17.68■□□□□ 0.42
NEDD8-205ENST00000527046 ARAP1Q96P48 1450 aa17.67■□□□□ 0.42
NEDD8-205ENST00000527046 TNIKQ9UKE5 1360 aa17.64■□□□□ 0.41
NEDD8-205ENST00000527046 AEBP2Q6ZN18 517 aaPredicted RBP17.61■□□□□ 0.41
NEDD8-205ENST00000527046 CYB5RLQ6IPT4 315 aa17.6■□□□□ 0.41
NEDD8-205ENST00000527046 SAMD9Q5K651 1589 aa17.6■□□□□ 0.41
NEDD8-205ENST00000527046 KIAA0556O60303 1618 aa17.6■□□□□ 0.41
NEDD8-205ENST00000527046 CARMIL2Q6F5E8 1435 aa17.57■□□□□ 0.4
NEDD8-205ENST00000527046 RANGAP1P46060 587 aaPredicted RBP17.57■□□□□ 0.4
NEDD8-205ENST00000527046 P3H3Q8IVL6 736 aa17.57■□□□□ 0.4
NEDD8-205ENST00000527046 ARHGAP35Q9NRY4 1499 aa17.55■□□□□ 0.4
NEDD8-205ENST00000527046 PTPRGP23470 1445 aa17.54■□□□□ 0.4
NEDD8-205ENST00000527046 FHOD3Q2V2M9 1422 aa17.49■□□□□ 0.39
NEDD8-205ENST00000527046 EFCAB5A4FU69 1503 aa17.49■□□□□ 0.39
NEDD8-205ENST00000527046 TTBK1Q5TCY1 1321 aaPredicted RBP17.47■□□□□ 0.39
NEDD8-205ENST00000527046 CLIP1P30622 1438 aa17.46■□□□□ 0.39
NEDD8-205ENST00000527046 CEP162Q5TB80 1403 aa17.45■□□□□ 0.38
NEDD8-205ENST00000527046 PLB1Q6P1J6 1458 aa17.44■□□□□ 0.38
NEDD8-205ENST00000527046 ADCY10Q96PN6 1610 aa17.44■□□□□ 0.38
NEDD8-205ENST00000527046 UACAQ9BZF9 1416 aa17.44■□□□□ 0.38
NEDD8-205ENST00000527046 ABCA8O94911 1581 aa17.44■□□□□ 0.38
NEDD8-205ENST00000527046 UHRF1BP1LA0JNW5 1464 aa17.42■□□□□ 0.38
NEDD8-205ENST00000527046 ABCC2Q92887 1545 aa17.39■□□□□ 0.37
NEDD8-205ENST00000527046 KDM5BQ9UGL1 1544 aa17.36■□□□□ 0.37
NEDD8-205ENST00000527046 NUP153P49790 1475 aaKnown RBP17.34■□□□□ 0.37
NEDD8-205ENST00000527046 RAPGEF6Q8TEU7 1601 aa17.33■□□□□ 0.37
NEDD8-205ENST00000527046 ATP10BO94823 1461 aa17.32■□□□□ 0.36
NEDD8-205ENST00000527046 FMN1Q68DA7 1419 aa17.32■□□□□ 0.36
NEDD8-205ENST00000527046 ZCCHC11Q5TAX3 1644 aaKnown RBP17.29■□□□□ 0.36
NEDD8-205ENST00000527046 LRRIQ1Q96JM4 1722 aa17.28■□□□□ 0.36
NEDD8-205ENST00000527046 CASKIN1Q8WXD9 1431 aa17.28■□□□□ 0.36
NEDD8-205ENST00000527046 ARID3CA6NKF2 412 aa17.27■□□□□ 0.36
NEDD8-205ENST00000527046 PCF11O94913 1555 aaKnown RBP17.26■□□□□ 0.35
NEDD8-205ENST00000527046 MAPKBP1O60336 1514 aa17.25■□□□□ 0.35
NEDD8-205ENST00000527046 NPM1P06748 294 aaKnown RBP eCLIP17.24■□□□□ 0.35
NEDD8-205ENST00000527046 EPRSP07814 1512 aaKnown RBP17.23■□□□□ 0.35
NEDD8-205ENST00000527046 ASXL2Q76L83 1435 aa17.22■□□□□ 0.35
NEDD8-205ENST00000527046 VPS8Q8N3P4 1428 aa17.22■□□□□ 0.35
NEDD8-205ENST00000527046 CDK13Q14004 1512 aaKnown RBP17.22■□□□□ 0.35
NEDD8-205ENST00000527046 FYCO1Q9BQS8 1478 aa17.2■□□□□ 0.34
NEDD8-205ENST00000527046 HECW1Q76N89 1606 aa17.2■□□□□ 0.34
NEDD8-205ENST00000527046 ATP1B4Q9UN42 357 aaPredicted RBP17.18■□□□□ 0.34
NEDD8-205ENST00000527046 ABCC10Q5T3U5 1492 aa17.17■□□□□ 0.34
NEDD8-205ENST00000527046 WDR7Q9Y4E6 1490 aa17.15■□□□□ 0.34
NEDD8-205ENST00000527046 MAGI3Q5TCQ9 1506 aa17.15■□□□□ 0.34
NEDD8-205ENST00000527046 KIF13AQ9H1H9 1805 aa17.14■□□□□ 0.34
NEDD8-205ENST00000527046 DIP2BQ9P265 1576 aa17.13■□□□□ 0.33
NEDD8-205ENST00000527046 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.12■□□□□ 0.33
NEDD8-205ENST00000527046 HNRNPUL2Q1KMD3 747 aaKnown RBP17.12■□□□□ 0.33
NEDD8-205ENST00000527046 PLEKHD1A6NEE1 506 aa17.11■□□□□ 0.33
NEDD8-205ENST00000527046 KCNH8Q96L42 1107 aa17.11■□□□□ 0.33
NEDD8-205ENST00000527046 FAM69CQ0P6D2 419 aa17.1■□□□□ 0.33
NEDD8-205ENST00000527046 CCDC18Q5T9S5 1454 aa17.1■□□□□ 0.33
NEDD8-205ENST00000527046 GLI2P10070 1586 aa17.1■□□□□ 0.33
NEDD8-205ENST00000527046 TRHP20396 242 aaPredicted RBP17.07■□□□□ 0.32
NEDD8-205ENST00000527046 KANK4Q5T7N3 995 aaPredicted RBP17.07■□□□□ 0.32
NEDD8-205ENST00000527046 MAP3K1Q13233 1512 aa17.06■□□□□ 0.32
NEDD8-205ENST00000527046 TROQ12816 1431 aaPredicted RBP17.06■□□□□ 0.32
NEDD8-205ENST00000527046 TIAM1Q13009 1591 aa17.06■□□□□ 0.32
NEDD8-205ENST00000527046 CFAP43Q8NDM7 1665 aa17.04■□□□□ 0.32
NEDD8-205ENST00000527046 KIF14Q15058 1648 aa17.03■□□□□ 0.32
NEDD8-205ENST00000527046 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.03■□□□□ 0.32
NEDD8-205ENST00000527046 CDK11AQ9UQ88 783 aaPredicted RBP17.03■□□□□ 0.32
NEDD8-205ENST00000527046 ABCA9Q8IUA7 1624 aa17.03■□□□□ 0.32
NEDD8-205ENST00000527046 MAP3K4Q9Y6R4 1608 aa17.03■□□□□ 0.32
NEDD8-205ENST00000527046 PPRC1Q5VV67 1664 aaKnown RBP17.02■□□□□ 0.32
NEDD8-205ENST00000527046 LRRC9Q6ZRR7 1453 aa17■□□□□ 0.31
NEDD8-205ENST00000527046 TTC37Q6PGP7 1564 aa16.98■□□□□ 0.31
NEDD8-205ENST00000527046 CD109Q6YHK3 1445 aa16.97■□□□□ 0.31
NEDD8-205ENST00000527046 MTUS2Q5JR59 1369 aa16.96■□□□□ 0.31
NEDD8-205ENST00000527046 TSPOAP1O95153 1857 aa16.96■□□□□ 0.31
NEDD8-205ENST00000527046 EHBP1L1Q8N3D4 1523 aa16.95■□□□□ 0.3
NEDD8-205ENST00000527046 PLCH2O75038 1416 aa16.93■□□□□ 0.3
NEDD8-205ENST00000527046 GPATCH8Q9UKJ3 1502 aaKnown RBP16.91■□□□□ 0.3
NEDD8-205ENST00000527046 NCOA2Q15596 1464 aa16.91■□□□□ 0.3
NEDD8-205ENST00000527046 CDC42BPBQ9Y5S2 1711 aa16.9■□□□□ 0.3
NEDD8-205ENST00000527046 COL17A1Q9UMD9 1497 aaPredicted RBP16.9■□□□□ 0.3
NEDD8-205ENST00000527046 CDC42BPAQ5VT25 1732 aa16.9■□□□□ 0.3
NEDD8-205ENST00000527046 APLP2Q06481 763 aa16.89■□□□□ 0.29
NEDD8-205ENST00000527046 PPARGC1BQ86YN6 1023 aaKnown RBP16.88■□□□□ 0.29
NEDD8-205ENST00000527046 SUPT6HQ7KZ85 1726 aaKnown RBP16.87■□□□□ 0.29
NEDD8-205ENST00000527046 ARAP3Q8WWN8 1544 aa16.86■□□□□ 0.29
NEDD8-205ENST00000527046 MYO5CQ9NQX4 1742 aa16.86■□□□□ 0.29
NEDD8-205ENST00000527046 PHLDB1Q86UU1 1377 aa16.85■□□□□ 0.29
NEDD8-205ENST00000527046 PREX2Q70Z35 1606 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms