RNA–Protein interactions for RNA: ENST00000517838.5

PVT1-206, Transcript of Pvt1 oncogene, humanhuman

TSL 2

Gene PVT1, Length 518 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PVT1-206ENST00000517838 SYNJ1O43426 1573 aa13.32□□□□□ -0.28
PVT1-206ENST00000517838 RNF39Q9H2S5 420 aa13.32□□□□□ -0.28
PVT1-206ENST00000517838 GAPVD1Q14C86 1478 aa13.31□□□□□ -0.28
PVT1-206ENST00000517838 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.31□□□□□ -0.283e-7■■■■□ 19.8
PVT1-206ENST00000517838 CUX1P39880 1505 aa13.3□□□□□ -0.28
PVT1-206ENST00000517838 WDR97A6NE52 1622 aa13.29□□□□□ -0.28
PVT1-206ENST00000517838 SLC4A2P04920 1241 aa13.29□□□□□ -0.28
PVT1-206ENST00000517838 ERCC6L2Q5T890 1561 aa13.2□□□□□ -0.3
PVT1-206ENST00000517838 ABCA10Q8WWZ4 1543 aa13.18□□□□□ -0.3
PVT1-206ENST00000517838 GRIN2AQ12879 1464 aa13.16□□□□□ -0.3
PVT1-206ENST00000517838 NUP160Q12769 1436 aa13.15□□□□□ -0.3
PVT1-206ENST00000517838 C1QBPQ07021 282 aaKnown RBP13.14□□□□□ -0.31
PVT1-206ENST00000517838 U3KPZ7 1027 aaPredicted RBP13.14□□□□□ -0.31
PVT1-206ENST00000517838 ABCA5Q8WWZ7 1642 aa13.13□□□□□ -0.31
PVT1-206ENST00000517838 PBRM1Q86U86 1689 aa13.12□□□□□ -0.31
PVT1-206ENST00000517838 CEP170Q5SW79 1584 aa13.12□□□□□ -0.31
PVT1-206ENST00000517838 WRNQ14191 1432 aaPredicted RBP eCLIP13.11□□□□□ -0.31
PVT1-206ENST00000517838 FHAD1B1AJZ9 1412 aa13.09□□□□□ -0.31
PVT1-206ENST00000517838 JPH4Q96JJ6 628 aa13.08□□□□□ -0.32
PVT1-206ENST00000517838 FAM69CQ0P6D2 419 aa13.07□□□□□ -0.32
PVT1-206ENST00000517838 PRG4Q92954 1404 aaPredicted RBP13.06□□□□□ -0.32
PVT1-206ENST00000517838 ADAMTS12P58397 1594 aa13.06□□□□□ -0.32
PVT1-206ENST00000517838 SHROOM2Q13796 1616 aa13.05□□□□□ -0.32
PVT1-206ENST00000517838 KDM4FA0A1W2PPD8 638 aa13.03□□□□□ -0.32
PVT1-206ENST00000517838 CACNB1Q02641 598 aaPredicted RBP13.03□□□□□ -0.32
PVT1-206ENST00000517838 FOXD4L1Q9NU39 408 aa13.03□□□□□ -0.32
PVT1-206ENST00000517838 ZBTB22O15209 634 aa13.01□□□□□ -0.33
PVT1-206ENST00000517838 ABCC10Q5T3U5 1492 aa13.01□□□□□ -0.33
PVT1-206ENST00000517838 NPM1P06748 294 aaKnown RBP eCLIP13□□□□□ -0.33
PVT1-206ENST00000517838 ERICH3Q5RHP9 1530 aa12.99□□□□□ -0.33
PVT1-206ENST00000517838 SUPT5HO00267 1087 aaKnown RBP12.99□□□□□ -0.33
PVT1-206ENST00000517838 KIF13AQ9H1H9 1805 aa12.97□□□□□ -0.33
PVT1-206ENST00000517838 TOP2BQ02880 1626 aa12.95□□□□□ -0.34
PVT1-206ENST00000517838 MAPKBP1O60336 1514 aa12.93□□□□□ -0.34
PVT1-206ENST00000517838 MYCNP04198 464 aaPredicted RBP12.93□□□□□ -0.34
PVT1-206ENST00000517838 ILDR1Q86SU0 546 aaPredicted RBP12.93□□□□□ -0.34
PVT1-206ENST00000517838 BIVM-ERCC5R4GMW8 1640 aa12.92□□□□□ -0.34
PVT1-206ENST00000517838 DIP2BQ9P265 1576 aa12.9□□□□□ -0.34
PVT1-206ENST00000517838 ADCY10Q96PN6 1610 aa12.88□□□□□ -0.35
PVT1-206ENST00000517838 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.88□□□□□ -0.35
PVT1-206ENST00000517838 HNRNPUL2Q1KMD3 747 aaKnown RBP12.88□□□□□ -0.35
PVT1-206ENST00000517838 RUSC2Q8N2Y8 1516 aa12.88□□□□□ -0.35
PVT1-206ENST00000517838 IGF1RP08069 1367 aa12.87□□□□□ -0.35
PVT1-206ENST00000517838 KIAA0586Q9BVV6 1533 aa12.86□□□□□ -0.35
PVT1-206ENST00000517838 KDM6BO15054 1643 aa12.84□□□□□ -0.35
PVT1-206ENST00000517838 SAMD1Q6SPF0 538 aaPredicted RBP12.84□□□□□ -0.35
PVT1-206ENST00000517838 PTPRGP23470 1445 aa12.83□□□□□ -0.36
PVT1-206ENST00000517838 TTBK1Q5TCY1 1321 aaPredicted RBP12.82□□□□□ -0.36
PVT1-206ENST00000517838 SPINK5Q9NQ38 1064 aaPredicted RBP12.81□□□□□ -0.36
PVT1-206ENST00000517838 ASXL2Q76L83 1435 aa12.78□□□□□ -0.36
PVT1-206ENST00000517838 CSRNP3Q8WYN3 585 aa12.77□□□□□ -0.37
PVT1-206ENST00000517838 EHMT2Q96KQ7 1210 aa12.77□□□□□ -0.37
PVT1-206ENST00000517838 TNIKQ9UKE5 1360 aa12.77□□□□□ -0.37
PVT1-206ENST00000517838 COL17A1Q9UMD9 1497 aaPredicted RBP12.77□□□□□ -0.37
PVT1-206ENST00000517838 APLP2Q06481 763 aa12.76□□□□□ -0.37
PVT1-206ENST00000517838 KIF27Q86VH2 1401 aa12.76□□□□□ -0.37
PVT1-206ENST00000517838 ABCC2Q92887 1545 aa12.76□□□□□ -0.37
PVT1-206ENST00000517838 ADGRL1O94910 1474 aa12.75□□□□□ -0.37
PVT1-206ENST00000517838 PLB1Q6P1J6 1458 aa12.75□□□□□ -0.37
PVT1-206ENST00000517838 CARMIL1Q5VZK9 1371 aa12.74□□□□□ -0.37
PVT1-206ENST00000517838 TSPOAP1O95153 1857 aa12.74□□□□□ -0.37
PVT1-206ENST00000517838 CARMIL2Q6F5E8 1435 aa12.73□□□□□ -0.37
PVT1-206ENST00000517838 GLI2P10070 1586 aa12.72□□□□□ -0.37
PVT1-206ENST00000517838 CAPN15O75808 1086 aa12.71□□□□□ -0.37
PVT1-206ENST00000517838 UHRF1BP1LA0JNW5 1464 aa12.71□□□□□ -0.38
PVT1-206ENST00000517838 UACAQ9BZF9 1416 aa12.71□□□□□ -0.38
PVT1-206ENST00000517838 EPRSP07814 1512 aaKnown RBP12.68□□□□□ -0.38
PVT1-206ENST00000517838 PPRC1Q5VV67 1664 aaKnown RBP12.67□□□□□ -0.38
PVT1-206ENST00000517838 DISP1Q96F81 1524 aa12.67□□□□□ -0.38
PVT1-206ENST00000517838 CUL7Q14999 1698 aa12.67□□□□□ -0.38
PVT1-206ENST00000517838 KDM5BQ9UGL1 1544 aa12.66□□□□□ -0.38
PVT1-206ENST00000517838 ZNF219Q9P2Y4 722 aaPredicted RBP12.64□□□□□ -0.39
PVT1-206ENST00000517838 HECW2Q9P2P5 1572 aa12.64□□□□□ -0.39
PVT1-206ENST00000517838 IQGAP2Q13576 1575 aa12.63□□□□□ -0.39
PVT1-206ENST00000517838 TEX14Q8IWB6 1497 aa12.62□□□□□ -0.39
PVT1-206ENST00000517838 ATF5Q9Y2D1 282 aaPredicted RBP12.62□□□□□ -0.39
PVT1-206ENST00000517838 ATXN8OSP0DMR3 200 aa12.61□□□□□ -0.39
PVT1-206ENST00000517838 DSG3P32926 999 aa12.6□□□□□ -0.39
PVT1-206ENST00000517838 MAP3K4Q9Y6R4 1608 aa12.59□□□□□ -0.39
PVT1-206ENST00000517838 KCNH8Q96L42 1107 aa12.58□□□□□ -0.4
PVT1-206ENST00000517838 WDR7Q9Y4E6 1490 aa12.58□□□□□ -0.4
PVT1-206ENST00000517838 UGGT2Q9NYU1 1516 aa12.57□□□□□ -0.4
PVT1-206ENST00000517838 CD109Q6YHK3 1445 aa12.56□□□□□ -0.4
PVT1-206ENST00000517838 ZCCHC11Q5TAX3 1644 aaKnown RBP12.55□□□□□ -0.4
PVT1-206ENST00000517838 RAPGEF2Q9Y4G8 1499 aa12.54□□□□□ -0.4
PVT1-206ENST00000517838 MAGI3Q5TCQ9 1506 aa12.54□□□□□ -0.4
PVT1-206ENST00000517838 FBXO41Q8TF61 875 aa12.54□□□□□ -0.4
PVT1-206ENST00000517838 KIAA0556O60303 1618 aa12.51□□□□□ -0.41
PVT1-206ENST00000517838 ABCB7O75027 752 aa12.47□□□□□ -0.41
PVT1-206ENST00000517838 ABCA8O94911 1581 aa12.45□□□□□ -0.42
PVT1-206ENST00000517838 ARID3CA6NKF2 412 aa12.45□□□□□ -0.42
PVT1-206ENST00000517838 ARAP3Q8WWN8 1544 aa12.45□□□□□ -0.42
PVT1-206ENST00000517838 RAPGEF3O95398 923 aa12.44□□□□□ -0.42
PVT1-206ENST00000517838 PTPRMP28827 1452 aa12.44□□□□□ -0.42
PVT1-206ENST00000517838 GOLGA3Q08378 1498 aa12.43□□□□□ -0.42
PVT1-206ENST00000517838 CFAP43Q8NDM7 1665 aa12.42□□□□□ -0.42
PVT1-206ENST00000517838 PHLDB1Q86UU1 1377 aa12.41□□□□□ -0.42
PVT1-206ENST00000517838 KIF21BO75037 1637 aa12.4□□□□□ -0.42
PVT1-206ENST00000517838 ATP10BO94823 1461 aa12.4□□□□□ -0.42
PVT1-206ENST00000517838 POLA2Q14181 598 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms