RNA–Protein interactions for RNA: ENST00000517490.5

CPNE3-203, Transcript of copine 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPNE3, Length 4,865 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-203ENST00000517490 P3H3Q8IVL6 736 aa9.12□□□□□ -0.95
CPNE3-203ENST00000517490 SMARCA4P51532 1647 aa9.11□□□□□ -0.95
CPNE3-203ENST00000517490 KCNA4P22459 653 aa9.11□□□□□ -0.95
CPNE3-203ENST00000517490 KANK4Q5T7N3 995 aaPredicted RBP9.11□□□□□ -0.95
CPNE3-203ENST00000517490 HIRIP3Q9BW71 556 aaPredicted RBP9.11□□□□□ -0.95
CPNE3-203ENST00000517490 CNGB1Q14028 1251 aaPredicted RBP9.1□□□□□ -0.95
CPNE3-203ENST00000517490 SETD5Q9C0A6 1442 aa9.1□□□□□ -0.95
CPNE3-203ENST00000517490 SIN3AQ96ST3 1273 aa9.09□□□□□ -0.95
CPNE3-203ENST00000517490 RAPGEF2Q9Y4G8 1499 aa9.09□□□□□ -0.95
CPNE3-203ENST00000517490 IRX6P78412 446 aaPredicted RBP9.09□□□□□ -0.95
CPNE3-203ENST00000517490 PPP4R2Q9NY27 417 aa9.08□□□□□ -0.96
CPNE3-203ENST00000517490 RAB3GAP2Q9H2M9 1393 aa9.08□□□□□ -0.96
CPNE3-203ENST00000517490 FAM9BQ8IZU0 186 aa9.08□□□□□ -0.96
CPNE3-203ENST00000517490 ERICH6BQ5W0A0 696 aa9.07□□□□□ -0.96
CPNE3-203ENST00000517490 KIF21BO75037 1637 aa9.07□□□□□ -0.96
CPNE3-203ENST00000517490 BICRAQ9NZM4 1560 aa9.07□□□□□ -0.96
CPNE3-203ENST00000517490 MRS2Q9HD23 443 aa9.06□□□□□ -0.96
CPNE3-203ENST00000517490 UNC13AQ9UPW8 1703 aa9.06□□□□□ -0.96
CPNE3-203ENST00000517490 EIF4G2P78344 907 aaKnown RBP eCLIP9.05□□□□□ -0.96
CPNE3-203ENST00000517490 ZBTB47Q9UFB7 747 aaPredicted RBP9.05□□□□□ -0.96
CPNE3-203ENST00000517490 CCDC136Q96JN2 1154 aa9.04□□□□□ -0.96
CPNE3-203ENST00000517490 TULP1O00294 542 aaPredicted RBP9.04□□□□□ -0.96
CPNE3-203ENST00000517490 NBR1Q14596 966 aa9.04□□□□□ -0.96
CPNE3-203ENST00000517490 FHAD1B1AJZ9 1412 aa9.04□□□□□ -0.96
CPNE3-203ENST00000517490 MTUS2Q5JR59 1369 aa9.03□□□□□ -0.96
CPNE3-203ENST00000517490 HMGXB3Q12766 1538 aa9.03□□□□□ -0.96
CPNE3-203ENST00000517490 TPRNQ4KMQ1 711 aa9.03□□□□□ -0.96
CPNE3-203ENST00000517490 KCNH8Q96L42 1107 aa9.03□□□□□ -0.96
CPNE3-203ENST00000517490 PPP1R15AO75807 674 aaPredicted RBP9.02□□□□□ -0.97
CPNE3-203ENST00000517490 HOMEZQ8IX15 550 aa9□□□□□ -0.97
CPNE3-203ENST00000517490 NOP58Q9Y2X3 529 aaKnown RBP9□□□□□ -0.97
CPNE3-203ENST00000517490 ZNF326Q5BKZ1 582 aaKnown RBP8.99□□□□□ -0.97
CPNE3-203ENST00000517490 PEG3Q9GZU2 1588 aa8.99□□□□□ -0.97
CPNE3-203ENST00000517490 NPM2Q86SE8 214 aaKnown RBP8.99□□□□□ -0.97
CPNE3-203ENST00000517490 NCAPD3P42695 1498 aa8.99□□□□□ -0.97
CPNE3-203ENST00000517490 EIF4G1Q04637 1599 aaKnown RBP8.99□□□□□ -0.97
CPNE3-203ENST00000517490 FANCIQ9NVI1 1328 aa8.99□□□□□ -0.97
CPNE3-203ENST00000517490 RRBP1Q9P2E9 1410 aaKnown RBP8.98□□□□□ -0.97
CPNE3-203ENST00000517490 DEKP35659 375 aaKnown RBP8.97□□□□□ -0.97
CPNE3-203ENST00000517490 ARHGAP35Q9NRY4 1499 aa8.97□□□□□ -0.97
CPNE3-203ENST00000517490 CARMIL1Q5VZK9 1371 aa8.96□□□□□ -0.98
CPNE3-203ENST00000517490 TMC1Q8TDI8 760 aa8.96□□□□□ -0.98
CPNE3-203ENST00000517490 CHIC2Q9UKJ5 165 aa8.96□□□□□ -0.98
CPNE3-203ENST00000517490 B4GALNT3Q6L9W6 998 aa8.95□□□□□ -0.98
CPNE3-203ENST00000517490 ERICH3Q5RHP9 1530 aa8.94□□□□□ -0.98
CPNE3-203ENST00000517490 CUX2O14529 1486 aa8.94□□□□□ -0.98
CPNE3-203ENST00000517490 PODXL2Q9NZ53 605 aa8.94□□□□□ -0.98
CPNE3-203ENST00000517490 SYNJ1O43426 1573 aa8.93□□□□□ -0.98
CPNE3-203ENST00000517490 ATAD2BQ9ULI0 1458 aa8.93□□□□□ -0.98
CPNE3-203ENST00000517490 RRP7BPQ9NSQ0 103 aa8.93□□□□□ -0.98
CPNE3-203ENST00000517490 HSPA5P11021 654 aaKnown RBP8.92□□□□□ -0.98
CPNE3-203ENST00000517490 ARAP1Q96P48 1450 aa8.91□□□□□ -0.98
CPNE3-203ENST00000517490 C14orf37Q86TY3 774 aa8.9□□□□□ -0.98
CPNE3-203ENST00000517490 PHF23Q9BUL5 403 aaPredicted RBP8.9□□□□□ -0.98
CPNE3-203ENST00000517490 DDRGK1Q96HY6 314 aa8.9□□□□□ -0.98
CPNE3-203ENST00000517490 PPM1GO15355 546 aaPredicted RBP8.9□□□□□ -0.99
CPNE3-203ENST00000517490 ARXQ96QS3 562 aa8.89□□□□□ -0.99
CPNE3-203ENST00000517490 PRXQ9BXM0 1461 aa8.88□□□□□ -0.99
CPNE3-203ENST00000517490 FMN1Q68DA7 1419 aa8.87□□□□□ -0.99
CPNE3-203ENST00000517490 CC2D2AQ9P2K1 1620 aa8.86□□□□□ -0.99
CPNE3-203ENST00000517490 ARID3CA6NKF2 412 aa8.86□□□□□ -0.99
CPNE3-203ENST00000517490 IPO9Q96P70 1041 aaKnown RBP8.85□□□□□ -0.99
CPNE3-203ENST00000517490 LRRC9Q6ZRR7 1453 aa8.85□□□□□ -0.99
CPNE3-203ENST00000517490 EIF5BO60841 1220 aaKnown RBP8.85□□□□□ -0.99
CPNE3-203ENST00000517490 TOP2BQ02880 1626 aa8.84□□□□□ -0.99
CPNE3-203ENST00000517490 ZBED9Q6R2W3 1325 aa8.84□□□□□ -0.99
CPNE3-203ENST00000517490 NEFMP07197 916 aa8.84□□□□□ -0.99
CPNE3-203ENST00000517490 PHLDB1Q86UU1 1377 aa8.83□□□□□ -1
CPNE3-203ENST00000517490 SALL2Q9Y467 1007 aaPredicted RBP8.83□□□□□ -1
CPNE3-203ENST00000517490 CCDC18Q5T9S5 1454 aa8.83□□□□□ -1
CPNE3-203ENST00000517490 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.83□□□□□ -1
CPNE3-203ENST00000517490 NUDCQ9Y266 331 aa8.83□□□□□ -1
CPNE3-203ENST00000517490 PDS5BQ9NTI5 1447 aa8.83□□□□□ -1
CPNE3-203ENST00000517490 ZNF777Q9ULD5 760 aaPredicted RBP8.82□□□□□ -1
CPNE3-203ENST00000517490 WDR97A6NE52 1622 aa8.82□□□□□ -1
CPNE3-203ENST00000517490 PRKRIP1Q9H875 184 aaPredicted RBP8.81□□□□□ -1
CPNE3-203ENST00000517490 TCERG1O14776 1098 aaKnown RBP8.81□□□□□ -1
CPNE3-203ENST00000517490 LAS1LQ9Y4W2 734 aaKnown RBP8.81□□□□□ -1
CPNE3-203ENST00000517490 FHOD3Q2V2M9 1422 aa8.81□□□□□ -1
CPNE3-203ENST00000517490 UACAQ9BZF9 1416 aa8.81□□□□□ -1
CPNE3-203ENST00000517490 LAMC3Q9Y6N6 1575 aa8.81□□□□□ -1
CPNE3-203ENST00000517490 CANXP27824 592 aaKnown RBP8.8□□□□□ -1
CPNE3-203ENST00000517490 IGF1RP08069 1367 aa8.8□□□□□ -1
CPNE3-203ENST00000517490 MPHOSPH9Q99550 1183 aa8.8□□□□□ -1
CPNE3-203ENST00000517490 TAOK2Q9UL54 1235 aa8.8□□□□□ -1
CPNE3-203ENST00000517490 TIAM1Q13009 1591 aa8.79□□□□□ -1
CPNE3-203ENST00000517490 L3MBTL2Q969R5 705 aa8.79□□□□□ -1
CPNE3-203ENST00000517490 FGD6Q6ZV73 1430 aa8.78□□□□□ -1
CPNE3-203ENST00000517490 CNTLNQ9NXG0 1405 aa8.78□□□□□ -1
CPNE3-203ENST00000517490 MSH5O43196 834 aa8.78□□□□□ -1
CPNE3-203ENST00000517490 UPF2Q9HAU5 1272 aaKnown RBP8.78□□□□□ -1
CPNE3-203ENST00000517490 USP35Q9P2H5 1018 aa8.78□□□□□ -1
CPNE3-203ENST00000517490 MAP3K1Q13233 1512 aa8.77□□□□□ -1
CPNE3-203ENST00000517490 CARD11Q9BXL7 1154 aa8.77□□□□□ -1
CPNE3-203ENST00000517490 KDM2AQ9Y2K7 1162 aa8.77□□□□□ -1.01
CPNE3-203ENST00000517490 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.76□□□□□ -1.01
CPNE3-203ENST00000517490 WDR43Q15061 677 aaKnown RBP eCLIP8.76□□□□□ -1.01
CPNE3-203ENST00000517490 GLIPR1L2Q4G1C9 344 aa8.76□□□□□ -1.01
CPNE3-203ENST00000517490 WASHC2AQ641Q2 1341 aa8.75□□□□□ -1.01
CPNE3-203ENST00000517490 SENP3-EIF4A1A0A087X0R7 540 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms