RNA–Protein interactions for RNA: ENST00000513818.1

TOPBP1-209, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 1 (best)

Gene TOPBP1, Length 898 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-209ENST00000513818 RAPGEF2Q9Y4G8 1499 aa16.33■□□□□ 0.2
TOPBP1-209ENST00000513818 PPP6R1Q9UPN7 881 aa16.32■□□□□ 0.2
TOPBP1-209ENST00000513818 CSRNP3Q8WYN3 585 aa16.31■□□□□ 0.2
TOPBP1-209ENST00000513818 ADRA2BP18089 450 aa16.29■□□□□ 0.2
TOPBP1-209ENST00000513818 DNAJC5Q9H3Z4 198 aa16.28■□□□□ 0.2
TOPBP1-209ENST00000513818 EHMT2Q96KQ7 1210 aa16.27■□□□□ 0.2
TOPBP1-209ENST00000513818 KIF21BO75037 1637 aa16.26■□□□□ 0.19
TOPBP1-209ENST00000513818 CTTNBP2Q8WZ74 1663 aa16.24■□□□□ 0.19
TOPBP1-209ENST00000513818 RIMBP3CA6NJZ7 1639 aa16.23■□□□□ 0.19
TOPBP1-209ENST00000513818 RIMBP3BA6NNM3 1639 aa16.23■□□□□ 0.19
TOPBP1-209ENST00000513818 RIMBP3Q9UFD9 1639 aa16.23■□□□□ 0.19
TOPBP1-209ENST00000513818 ARHGEF11O15085 1522 aa16.22■□□□□ 0.19
TOPBP1-209ENST00000513818 SHROOM2Q13796 1616 aa16.22■□□□□ 0.19
TOPBP1-209ENST00000513818 ERCC6L2Q5T890 1561 aa16.21■□□□□ 0.19
TOPBP1-209ENST00000513818 IQGAP2Q13576 1575 aa16.21■□□□□ 0.18
TOPBP1-209ENST00000513818 KIAA0586Q9BVV6 1533 aa16.2■□□□□ 0.18
TOPBP1-209ENST00000513818 GOLGA3Q08378 1498 aa16.17■□□□□ 0.18
TOPBP1-209ENST00000513818 PRG4Q92954 1404 aaPredicted RBP16.13■□□□□ 0.17
TOPBP1-209ENST00000513818 ARAP1Q96P48 1450 aa16.12■□□□□ 0.17
TOPBP1-209ENST00000513818 JPH4Q96JJ6 628 aa16.12■□□□□ 0.17
TOPBP1-209ENST00000513818 PIAS4Q8N2W9 510 aaPredicted RBP16.11■□□□□ 0.17
TOPBP1-209ENST00000513818 UGGT2Q9NYU1 1516 aa16.09■□□□□ 0.17
TOPBP1-209ENST00000513818 RANGAP1P46060 587 aaPredicted RBP16.08■□□□□ 0.16
TOPBP1-209ENST00000513818 KIAA0556O60303 1618 aa16.08■□□□□ 0.16
TOPBP1-209ENST00000513818 UBTFP17480 764 aaKnown RBP16.07■□□□□ 0.16
TOPBP1-209ENST00000513818 DISP1Q96F81 1524 aa16.07■□□□□ 0.16
TOPBP1-209ENST00000513818 TTBK1Q5TCY1 1321 aaPredicted RBP16.04■□□□□ 0.16
TOPBP1-209ENST00000513818 SAMD9Q5K651 1589 aa16.02■□□□□ 0.16
TOPBP1-209ENST00000513818 CYB5RLQ6IPT4 315 aa16.01■□□□□ 0.15
TOPBP1-209ENST00000513818 CARMIL2Q6F5E8 1435 aa16.01■□□□□ 0.15
TOPBP1-209ENST00000513818 LOC105371045A0A1W2PR82 267 aa16■□□□□ 0.15
TOPBP1-209ENST00000513818 P3H3Q8IVL6 736 aa15.99■□□□□ 0.15
TOPBP1-209ENST00000513818 FHOD3Q2V2M9 1422 aa15.96■□□□□ 0.15
TOPBP1-209ENST00000513818 TNIKQ9UKE5 1360 aa15.96■□□□□ 0.15
TOPBP1-209ENST00000513818 EFCAB5A4FU69 1503 aa15.94■□□□□ 0.14
TOPBP1-209ENST00000513818 PTPRGP23470 1445 aa15.94■□□□□ 0.14
TOPBP1-209ENST00000513818 ARHGAP35Q9NRY4 1499 aa15.93■□□□□ 0.14
TOPBP1-209ENST00000513818 ADCY10Q96PN6 1610 aa15.92■□□□□ 0.14
TOPBP1-209ENST00000513818 MSH5O43196 834 aa15.9■□□□□ 0.14
TOPBP1-209ENST00000513818 PLB1Q6P1J6 1458 aa15.89■□□□□ 0.13
TOPBP1-209ENST00000513818 CLIP1P30622 1438 aa15.88■□□□□ 0.13
TOPBP1-209ENST00000513818 CEP162Q5TB80 1403 aa15.88■□□□□ 0.13
TOPBP1-209ENST00000513818 ABCA8O94911 1581 aa15.86■□□□□ 0.13
TOPBP1-209ENST00000513818 ABCC2Q92887 1545 aa15.85■□□□□ 0.13
TOPBP1-209ENST00000513818 UACAQ9BZF9 1416 aa15.85■□□□□ 0.13
TOPBP1-209ENST00000513818 RAPGEF6Q8TEU7 1601 aa15.83■□□□□ 0.12
TOPBP1-209ENST00000513818 ARID3CA6NKF2 412 aa15.81■□□□□ 0.12
TOPBP1-209ENST00000513818 UHRF1BP1LA0JNW5 1464 aa15.8■□□□□ 0.12
TOPBP1-209ENST00000513818 ZCCHC11Q5TAX3 1644 aaKnown RBP15.79■□□□□ 0.12
TOPBP1-209ENST00000513818 PCF11O94913 1555 aaKnown RBP15.79■□□□□ 0.12
TOPBP1-209ENST00000513818 NUP153P49790 1475 aaKnown RBP15.76■□□□□ 0.11
TOPBP1-209ENST00000513818 FMN1Q68DA7 1419 aa15.76■□□□□ 0.11
TOPBP1-209ENST00000513818 KDM5BQ9UGL1 1544 aa15.74■□□□□ 0.11
TOPBP1-209ENST00000513818 LRRIQ1Q96JM4 1722 aa15.74■□□□□ 0.11
TOPBP1-209ENST00000513818 HECW1Q76N89 1606 aa15.73■□□□□ 0.11
TOPBP1-209ENST00000513818 CDK13Q14004 1512 aaKnown RBP15.73■□□□□ 0.11
TOPBP1-209ENST00000513818 ATP1B4Q9UN42 357 aaPredicted RBP15.72■□□□□ 0.11
TOPBP1-209ENST00000513818 MAPKBP1O60336 1514 aa15.71■□□□□ 0.11
TOPBP1-209ENST00000513818 NPM1P06748 294 aaKnown RBP eCLIP15.7■□□□□ 0.1
TOPBP1-209ENST00000513818 ATP10BO94823 1461 aa15.7■□□□□ 0.1
TOPBP1-209ENST00000513818 ASXL2Q76L83 1435 aa15.68■□□□□ 0.1
TOPBP1-209ENST00000513818 FYCO1Q9BQS8 1478 aa15.68■□□□□ 0.1
TOPBP1-209ENST00000513818 CASKIN1Q8WXD9 1431 aa15.68■□□□□ 0.1
TOPBP1-209ENST00000513818 EPRSP07814 1512 aaKnown RBP15.67■□□□□ 0.1
TOPBP1-209ENST00000513818 KIF13AQ9H1H9 1805 aa15.66■□□□□ 0.1
TOPBP1-209ENST00000513818 DIP2BQ9P265 1576 aa15.66■□□□□ 0.1
TOPBP1-209ENST00000513818 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.65■□□□□ 0.1
TOPBP1-209ENST00000513818 HNRNPUL2Q1KMD3 747 aaKnown RBP15.65■□□□□ 0.1
TOPBP1-209ENST00000513818 VPS8Q8N3P4 1428 aa15.65■□□□□ 0.1
TOPBP1-209ENST00000513818 WDR7Q9Y4E6 1490 aa15.64■□□□□ 0.09
TOPBP1-209ENST00000513818 TRHP20396 242 aaPredicted RBP15.63■□□□□ 0.09
TOPBP1-209ENST00000513818 ABCC10Q5T3U5 1492 aa15.61■□□□□ 0.09
TOPBP1-209ENST00000513818 CCDC18Q5T9S5 1454 aa15.6■□□□□ 0.09
TOPBP1-209ENST00000513818 MAGI3Q5TCQ9 1506 aa15.59■□□□□ 0.09
TOPBP1-209ENST00000513818 CFAP43Q8NDM7 1665 aa15.59■□□□□ 0.09
TOPBP1-209ENST00000513818 FAM69CQ0P6D2 419 aa15.56■□□□□ 0.08
TOPBP1-209ENST00000513818 KCNH8Q96L42 1107 aa15.56■□□□□ 0.08
TOPBP1-209ENST00000513818 KIF14Q15058 1648 aa15.56■□□□□ 0.08
TOPBP1-209ENST00000513818 TSPOAP1O95153 1857 aa15.56■□□□□ 0.08
TOPBP1-209ENST00000513818 TIAM1Q13009 1591 aa15.54■□□□□ 0.08
TOPBP1-209ENST00000513818 GLI2P10070 1586 aa15.53■□□□□ 0.08
TOPBP1-209ENST00000513818 TTC37Q6PGP7 1564 aa15.53■□□□□ 0.08
TOPBP1-209ENST00000513818 MAP3K4Q9Y6R4 1608 aa15.53■□□□□ 0.08
TOPBP1-209ENST00000513818 TROQ12816 1431 aaPredicted RBP15.51■□□□□ 0.07
TOPBP1-209ENST00000513818 PPRC1Q5VV67 1664 aaKnown RBP15.51■□□□□ 0.07
TOPBP1-209ENST00000513818 PLEKHD1A6NEE1 506 aa15.51■□□□□ 0.07
TOPBP1-209ENST00000513818 ABCA9Q8IUA7 1624 aa15.5■□□□□ 0.07
TOPBP1-209ENST00000513818 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.5■□□□□ 0.07
TOPBP1-209ENST00000513818 EHBP1L1Q8N3D4 1523 aa15.48■□□□□ 0.07
TOPBP1-209ENST00000513818 MTUS2Q5JR59 1369 aa15.47■□□□□ 0.07
TOPBP1-209ENST00000513818 CDK11AQ9UQ88 783 aaPredicted RBP15.46■□□□□ 0.07
TOPBP1-209ENST00000513818 CD109Q6YHK3 1445 aa15.45■□□□□ 0.06
TOPBP1-209ENST00000513818 LRRC9Q6ZRR7 1453 aa15.44■□□□□ 0.06
TOPBP1-209ENST00000513818 MYO5CQ9NQX4 1742 aa15.43■□□□□ 0.06
TOPBP1-209ENST00000513818 KANK4Q5T7N3 995 aaPredicted RBP15.43■□□□□ 0.06
TOPBP1-209ENST00000513818 MAP3K1Q13233 1512 aa15.43■□□□□ 0.06
TOPBP1-209ENST00000513818 SUPT6HQ7KZ85 1726 aaKnown RBP15.41■□□□□ 0.06
TOPBP1-209ENST00000513818 CDC42BPAQ5VT25 1732 aa15.4■□□□□ 0.06
TOPBP1-209ENST00000513818 PREX2Q70Z35 1606 aa15.39■□□□□ 0.05
TOPBP1-209ENST00000513818 APLP2Q06481 763 aa15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms