RNA–Protein interactions for RNA: ENST00000511604.5

CPNE4-208, Transcript of copine 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPNE4, Length 2,503 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4-208ENST00000511604 CCDC88BA6NC98 1476 aa10.12□□□□□ -0.79
CPNE4-208ENST00000511604 EIF4G1Q04637 1599 aaKnown RBP10.12□□□□□ -0.79
CPNE4-208ENST00000511604 RUSC2Q8N2Y8 1516 aa10.12□□□□□ -0.79
CPNE4-208ENST00000511604 HIRIP3Q9BW71 556 aaPredicted RBP10.11□□□□□ -0.79
CPNE4-208ENST00000511604 WASHC2CQ9Y4E1 1318 aa10.11□□□□□ -0.79
CPNE4-208ENST00000511604 TNIKQ9UKE5 1360 aa10.1□□□□□ -0.79
CPNE4-208ENST00000511604 RANGAP1P46060 587 aaPredicted RBP10.09□□□□□ -0.79
CPNE4-208ENST00000511604 BRPF3Q9ULD4 1205 aa10.08□□□□□ -0.8
CPNE4-208ENST00000511604 IPO9Q96P70 1041 aaKnown RBP10.06□□□□□ -0.8
CPNE4-208ENST00000511604 USP35Q9P2H5 1018 aa10.04□□□□□ -0.8
CPNE4-208ENST00000511604 ZBTB47Q9UFB7 747 aaPredicted RBP10.04□□□□□ -0.8
CPNE4-208ENST00000511604 A0A0U1RQG5 324 aaPredicted RBP10.03□□□□□ -0.8
CPNE4-208ENST00000511604 ANP32AP39687 249 aaKnown RBP10.03□□□□□ -0.8
CPNE4-208ENST00000511604 FGD1P98174 961 aa10.02□□□□□ -0.8
CPNE4-208ENST00000511604 SCRIBQ14160 1630 aa10.02□□□□□ -0.81
CPNE4-208ENST00000511604 PPP4R2Q9NY27 417 aa10.02□□□□□ -0.81
CPNE4-208ENST00000511604 NEFMP07197 916 aa10.01□□□□□ -0.81
CPNE4-208ENST00000511604 PDE4CQ08493 712 aa10.01□□□□□ -0.81
CPNE4-208ENST00000511604 AAMPQ13685 434 aa10□□□□□ -0.81
CPNE4-208ENST00000511604 PPP1R15AO75807 674 aaPredicted RBP10□□□□□ -0.81
CPNE4-208ENST00000511604 RBM10P98175 930 aaKnown RBP10□□□□□ -0.81
CPNE4-208ENST00000511604 MROH2BQ7Z745 1585 aa9.99□□□□□ -0.81
CPNE4-208ENST00000511604 B4GALNT3Q6L9W6 998 aa9.99□□□□□ -0.81
CPNE4-208ENST00000511604 FAM43AQ8N2R8 423 aa9.98□□□□□ -0.81
CPNE4-208ENST00000511604 CCER2I3L3R5 266 aa9.97□□□□□ -0.81
CPNE4-208ENST00000511604 CLIP1P30622 1438 aa9.96□□□□□ -0.81
CPNE4-208ENST00000511604 SIN3AQ96ST3 1273 aa9.96□□□□□ -0.82
CPNE4-208ENST00000511604 WIZO95785 1651 aa9.96□□□□□ -0.82
CPNE4-208ENST00000511604 KANK4Q5T7N3 995 aaPredicted RBP9.95□□□□□ -0.82
CPNE4-208ENST00000511604 PDIA4P13667 645 aaKnown RBP9.94□□□□□ -0.82
CPNE4-208ENST00000511604 GSE1Q14687 1217 aa9.94□□□□□ -0.82
CPNE4-208ENST00000511604 HNRNPUQ00839 825 aaKnown RBP eCLIP9.93□□□□□ -0.82
CPNE4-208ENST00000511604 HSP90AA2PQ14568 343 aaPredicted RBP9.93□□□□□ -0.82
CPNE4-208ENST00000511604 RRP9O43818 475 aaKnown RBP9.92□□□□□ -0.82
CPNE4-208ENST00000511604 LAS1LQ9Y4W2 734 aaKnown RBP9.92□□□□□ -0.82
CPNE4-208ENST00000511604 BAZ1BQ9UIG0 1483 aaKnown RBP9.92□□□□□ -0.82
CPNE4-208ENST00000511604 PPM1GO15355 546 aaPredicted RBP9.9□□□□□ -0.82
CPNE4-208ENST00000511604 ANP32CO43423 234 aa9.89□□□□□ -0.83
CPNE4-208ENST00000511604 GOLGA3Q08378 1498 aa9.89□□□□□ -0.83
CPNE4-208ENST00000511604 WDR97A6NE52 1622 aa9.89□□□□□ -0.83
CPNE4-208ENST00000511604 ERCC6Q03468 1493 aa9.89□□□□□ -0.83
CPNE4-208ENST00000511604 EEA1Q15075 1411 aa9.89□□□□□ -0.83
CPNE4-208ENST00000511604 VPS8Q8N3P4 1428 aa9.89□□□□□ -0.83
CPNE4-208ENST00000511604 CCDC184Q52MB2 194 aa9.88□□□□□ -0.83
CPNE4-208ENST00000511604 BCL11BQ9C0K0 894 aaPredicted RBP9.88□□□□□ -0.83
CPNE4-208ENST00000511604 FRAT1Q92837 279 aaPredicted RBP9.86□□□□□ -0.83
CPNE4-208ENST00000511604 MAPKBP1O60336 1514 aa9.85□□□□□ -0.83
CPNE4-208ENST00000511604 HSP90AA1P07900 732 aaKnown RBP9.84□□□□□ -0.83
CPNE4-208ENST00000511604 SENP3-EIF4A1A0A087X0R7 540 aa9.83□□□□□ -0.84
CPNE4-208ENST00000511604 DCAF11Q8TEB1 546 aa9.82□□□□□ -0.84
CPNE4-208ENST00000511604 RAB3GAP2Q9H2M9 1393 aa9.81□□□□□ -0.84
CPNE4-208ENST00000511604 RRAGDQ9NQL2 400 aaPredicted RBP9.81□□□□□ -0.84
CPNE4-208ENST00000511604 KIF21BO75037 1637 aa9.8□□□□□ -0.84
CPNE4-208ENST00000511604 NPM2Q86SE8 214 aaKnown RBP9.8□□□□□ -0.84
CPNE4-208ENST00000511604 NAP1L5Q96NT1 182 aaPredicted RBP9.79□□□□□ -0.84
CPNE4-208ENST00000511604 RAPGEF2Q9Y4G8 1499 aa9.79□□□□□ -0.84
CPNE4-208ENST00000511604 NFKBIBQ15653 356 aa9.79□□□□□ -0.84
CPNE4-208ENST00000511604 PRDM4Q9UKN5 801 aa9.79□□□□□ -0.84
CPNE4-208ENST00000511604 AEBP2Q6ZN18 517 aaPredicted RBP9.78□□□□□ -0.84
CPNE4-208ENST00000511604 CALD1Q05682 793 aaKnown RBP9.77□□□□□ -0.85
CPNE4-208ENST00000511604 TAF7LQ5H9L4 462 aa9.76□□□□□ -0.85
CPNE4-208ENST00000511604 FAM9BQ8IZU0 186 aa9.76□□□□□ -0.85
CPNE4-208ENST00000511604 NCAPD3P42695 1498 aa9.75□□□□□ -0.85
CPNE4-208ENST00000511604 PNNQ9H307 717 aaKnown RBP9.75□□□□□ -0.85
CPNE4-208ENST00000511604 RRBP1Q9P2E9 1410 aaKnown RBP9.74□□□□□ -0.85
CPNE4-208ENST00000511604 CEP164Q9UPV0 1460 aa9.74□□□□□ -0.85
CPNE4-208ENST00000511604 BAZ1AQ9NRL2 1556 aaPredicted RBP9.73□□□□□ -0.85
CPNE4-208ENST00000511604 CENPJQ9HC77 1338 aaPredicted RBP9.73□□□□□ -0.85
CPNE4-208ENST00000511604 RGS3P49796 1198 aa9.73□□□□□ -0.85
CPNE4-208ENST00000511604 CCNB3Q8WWL7 1395 aa9.73□□□□□ -0.85
CPNE4-208ENST00000511604 AKNAQ7Z591 1439 aa9.72□□□□□ -0.85
CPNE4-208ENST00000511604 SKAP1Q86WV1 359 aa9.71□□□□□ -0.85
CPNE4-208ENST00000511604 PDCL3Q9H2J4 239 aa9.7□□□□□ -0.86
CPNE4-208ENST00000511604 CLCN1P35523 988 aa9.7□□□□□ -0.86
CPNE4-208ENST00000511604 SLC4A3P48751 1232 aa9.7□□□□□ -0.86
CPNE4-208ENST00000511604 ARAP1Q96P48 1450 aa9.69□□□□□ -0.86
CPNE4-208ENST00000511604 CNGB1Q14028 1251 aaPredicted RBP9.68□□□□□ -0.86
CPNE4-208ENST00000511604 KLHL34Q8N239 644 aa9.68□□□□□ -0.86
CPNE4-208ENST00000511604 DDRGK1Q96HY6 314 aa9.68□□□□□ -0.86
CPNE4-208ENST00000511604 BBXQ8WY36 941 aaPredicted RBP9.68□□□□□ -0.86
CPNE4-208ENST00000511604 NAP1L2Q9ULW6 460 aaPredicted RBP9.68□□□□□ -0.86
CPNE4-208ENST00000511604 THOC2Q8NI27 1593 aaKnown RBP9.68□□□□□ -0.86
CPNE4-208ENST00000511604 PDE4AP27815 886 aa9.67□□□□□ -0.86
CPNE4-208ENST00000511604 SMARCA2P51531 1590 aa9.67□□□□□ -0.86
CPNE4-208ENST00000511604 BACH2Q9BYV9 841 aa9.66□□□□□ -0.86
CPNE4-208ENST00000511604 PEG3Q9GZU2 1588 aa9.66□□□□□ -0.86
CPNE4-208ENST00000511604 TCERG1O14776 1098 aaKnown RBP9.66□□□□□ -0.86
CPNE4-208ENST00000511604 SETD5Q9C0A6 1442 aa9.65□□□□□ -0.86
CPNE4-208ENST00000511604 ZBED9Q6R2W3 1325 aa9.65□□□□□ -0.86
CPNE4-208ENST00000511604 GTF2E1P29083 439 aaPredicted RBP9.65□□□□□ -0.86
CPNE4-208ENST00000511604 FRAT2O75474 233 aaPredicted RBP9.64□□□□□ -0.87
CPNE4-208ENST00000511604 CHMP4BQ9H444 224 aaKnown RBP9.64□□□□□ -0.87
CPNE4-208ENST00000511604 FAM50AQ14320 339 aaKnown RBP9.63□□□□□ -0.87
CPNE4-208ENST00000511604 MRS2Q9HD23 443 aa9.63□□□□□ -0.87
CPNE4-208ENST00000511604 SYNJ1O43426 1573 aa9.63□□□□□ -0.87
CPNE4-208ENST00000511604 L1TD1Q5T7N2 865 aaKnown RBP9.62□□□□□ -0.87
CPNE4-208ENST00000511604 RNF123Q5XPI4 1314 aa9.62□□□□□ -0.87
CPNE4-208ENST00000511604 MS4A1P11836 297 aa9.61□□□□□ -0.87
CPNE4-208ENST00000511604 PAXIP1Q6ZW49 1069 aaPredicted RBP9.61□□□□□ -0.87
CPNE4-208ENST00000511604 HSPA5P11021 654 aaKnown RBP9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms