RNA–Protein interactions for RNA: ENST00000511604.5

CPNE4-208, Transcript of copine 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPNE4, Length 2,503 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4-208ENST00000511604 PELP1Q8IZL8 1130 aaKnown RBP12.96□□□□□ -0.34
CPNE4-208ENST00000511604 MYT1Q01538 1121 aa12.64□□□□□ -0.39
CPNE4-208ENST00000511604 NISCHQ9Y2I1 1504 aa12.61□□□□□ -0.39
CPNE4-208ENST00000511604 HRCP23327 699 aa12.49□□□□□ -0.41
CPNE4-208ENST00000511604 PPARGC1BQ86YN6 1023 aaKnown RBP12.28□□□□□ -0.44
CPNE4-208ENST00000511604 SCAF1Q9H7N4 1312 aaKnown RBP12.13□□□□□ -0.47
CPNE4-208ENST00000511604 TTBK1Q5TCY1 1321 aaPredicted RBP12.06□□□□□ -0.48
CPNE4-208ENST00000511604 PCGF6Q9BYE7 350 aa12.02□□□□□ -0.48
CPNE4-208ENST00000511604 MYO15BQ96JP2 1530 aa11.81□□□□□ -0.52
CPNE4-208ENST00000511604 SUPT5HO00267 1087 aaKnown RBP11.77□□□□□ -0.53
CPNE4-208ENST00000511604 SHROOM4Q9ULL8 1493 aa11.74□□□□□ -0.53
CPNE4-208ENST00000511604 PRKCSHP14314 528 aaPredicted RBP11.72□□□□□ -0.53
CPNE4-208ENST00000511604 BCL11AQ9H165 835 aa11.71□□□□□ -0.53
CPNE4-208ENST00000511604 ACIN1Q9UKV3 1341 aaKnown RBP11.65□□□□□ -0.54
CPNE4-208ENST00000511604 CHIC1Q5VXU3 224 aa11.6□□□□□ -0.55
CPNE4-208ENST00000511604 FAM9AQ8IZU1 332 aaPredicted RBP11.59□□□□□ -0.55
CPNE4-208ENST00000511604 NEUROD1Q13562 356 aa11.58□□□□□ -0.56
CPNE4-208ENST00000511604 GTF3C3Q9Y5Q9 886 aa11.57□□□□□ -0.56
CPNE4-208ENST00000511604 CENPBP07199 599 aaPredicted RBP11.56□□□□□ -0.56
CPNE4-208ENST00000511604 ZEB1P37275 1124 aaPredicted RBP11.53□□□□□ -0.56
CPNE4-208ENST00000511604 LOC105371045A0A1W2PR82 267 aa11.51□□□□□ -0.57
CPNE4-208ENST00000511604 ERICH6Q7L0X2 663 aa11.46□□□□□ -0.58
CPNE4-208ENST00000511604 DCAF1Q9Y4B6 1507 aa11.44□□□□□ -0.58
CPNE4-208ENST00000511604 POTEDQ86YR6 584 aa11.43□□□□□ -0.58
CPNE4-208ENST00000511604 CCDC180Q9P1Z9 1646 aa11.41□□□□□ -0.58
CPNE4-208ENST00000511604 APLP2Q06481 763 aa11.39□□□□□ -0.59
CPNE4-208ENST00000511604 TRIM26Q12899 539 aaPredicted RBP11.39□□□□□ -0.59
CPNE4-208ENST00000511604 ANP32EQ9BTT0 268 aa11.33□□□□□ -0.6
CPNE4-208ENST00000511604 ABCC9O60706 1549 aa11.28□□□□□ -0.6
CPNE4-208ENST00000511604 CSRNP3Q8WYN3 585 aa11.21□□□□□ -0.61
CPNE4-208ENST00000511604 DIEXFQ68CQ4 756 aaKnown RBP11.13□□□□□ -0.63
CPNE4-208ENST00000511604 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.07□□□□□ -0.64
CPNE4-208ENST00000511604 YTHDC1Q96MU7 727 aaKnown RBP11.06□□□□□ -0.64
CPNE4-208ENST00000511604 EHMT2Q96KQ7 1210 aa11.04□□□□□ -0.64
CPNE4-208ENST00000511604 TSHZ2Q9NRE2 1034 aa11□□□□□ -0.65
CPNE4-208ENST00000511604 CCER1Q8TC90 406 aaPredicted RBP10.93□□□□□ -0.66
CPNE4-208ENST00000511604 ANO8Q9HCE9 1232 aaPredicted RBP10.9□□□□□ -0.66
CPNE4-208ENST00000511604 TRIM41Q8WV44 630 aa10.9□□□□□ -0.67
CPNE4-208ENST00000511604 SUPT16HQ9Y5B9 1047 aaKnown RBP10.89□□□□□ -0.67
CPNE4-208ENST00000511604 CLSPNQ9HAW4 1339 aa10.89□□□□□ -0.67
CPNE4-208ENST00000511604 DNAJC5BQ9UF47 199 aa10.89□□□□□ -0.67
CPNE4-208ENST00000511604 MIER1Q8N108 512 aa10.85□□□□□ -0.67
CPNE4-208ENST00000511604 SLC24A1O60721 1099 aa10.82□□□□□ -0.68
CPNE4-208ENST00000511604 UBE2Q2Q8WVN8 375 aa10.81□□□□□ -0.68
CPNE4-208ENST00000511604 DCAF8L2P0C7V8 631 aa10.8□□□□□ -0.68
CPNE4-208ENST00000511604 ZNF316A6NFI3 1004 aaPredicted RBP10.77□□□□□ -0.69
CPNE4-208ENST00000511604 ZCCHC6Q5VYS8 1495 aaKnown RBP10.76□□□□□ -0.69
CPNE4-208ENST00000511604 EIF5BO60841 1220 aaKnown RBP10.72□□□□□ -0.69
CPNE4-208ENST00000511604 SALL2Q9Y467 1007 aaPredicted RBP10.72□□□□□ -0.69
CPNE4-208ENST00000511604 RB1CC1Q8TDY2 1594 aa10.7□□□□□ -0.7
CPNE4-208ENST00000511604 RBM19Q9Y4C8 960 aaKnown RBP10.68□□□□□ -0.7
CPNE4-208ENST00000511604 MYT1LQ9UL68 1186 aa10.67□□□□□ -0.7
CPNE4-208ENST00000511604 ERICH6BQ5W0A0 696 aa10.65□□□□□ -0.7
CPNE4-208ENST00000511604 CCDC136Q96JN2 1154 aa10.65□□□□□ -0.7
CPNE4-208ENST00000511604 MSH5O43196 834 aa10.65□□□□□ -0.7
CPNE4-208ENST00000511604 DEKP35659 375 aaKnown RBP10.63□□□□□ -0.71
CPNE4-208ENST00000511604 BCANQ96GW7 911 aa10.6□□□□□ -0.71
CPNE4-208ENST00000511604 DAXXQ9UER7 740 aaPredicted RBP10.59□□□□□ -0.71
CPNE4-208ENST00000511604 DNAJC5Q9H3Z4 198 aa10.55□□□□□ -0.72
CPNE4-208ENST00000511604 PKNOX2Q96KN3 472 aa10.54□□□□□ -0.72
CPNE4-208ENST00000511604 FANCIQ9NVI1 1328 aa10.52□□□□□ -0.72
CPNE4-208ENST00000511604 NACADO15069 1562 aa10.51□□□□□ -0.73
CPNE4-208ENST00000511604 KCNH8Q96L42 1107 aa10.5□□□□□ -0.73
CPNE4-208ENST00000511604 PLEKHG5O94827 1062 aa10.5□□□□□ -0.73
CPNE4-208ENST00000511604 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.5□□□□□ -0.73
CPNE4-208ENST00000511604 ITGAEP38570 1179 aa10.45□□□□□ -0.74
CPNE4-208ENST00000511604 FKBP8Q14318 412 aa10.45□□□□□ -0.74
CPNE4-208ENST00000511604 HNRNPUL2Q1KMD3 747 aaKnown RBP10.44□□□□□ -0.74
CPNE4-208ENST00000511604 IL27Q8NEV9 243 aa10.42□□□□□ -0.74
CPNE4-208ENST00000511604 PODXL2Q9NZ53 605 aa10.42□□□□□ -0.74
CPNE4-208ENST00000511604 RTN4Q9NQC3 1192 aaKnown RBP10.38□□□□□ -0.75
CPNE4-208ENST00000511604 RSF1Q96T23 1441 aaPredicted RBP10.36□□□□□ -0.75
CPNE4-208ENST00000511604 NEFLP07196 543 aa10.34□□□□□ -0.75
CPNE4-208ENST00000511604 UNC13AQ9UPW8 1703 aa10.33□□□□□ -0.76
CPNE4-208ENST00000511604 NBR1Q14596 966 aa10.32□□□□□ -0.76
CPNE4-208ENST00000511604 PABPN1Q86U42 306 aaKnown RBP eCLIP10.31□□□□□ -0.76
CPNE4-208ENST00000511604 CECR2Q9BXF3 1484 aa10.3□□□□□ -0.76
CPNE4-208ENST00000511604 BICRAQ9NZM4 1560 aa10.28□□□□□ -0.76
CPNE4-208ENST00000511604 CDK11AQ9UQ88 783 aaPredicted RBP10.28□□□□□ -0.76
CPNE4-208ENST00000511604 WRNQ14191 1432 aaPredicted RBP eCLIP10.26□□□□□ -0.77
CPNE4-208ENST00000511604 CEP162Q5TB80 1403 aa10.26□□□□□ -0.77
CPNE4-208ENST00000511604 NOP58Q9Y2X3 529 aaKnown RBP10.26□□□□□ -0.77
CPNE4-208ENST00000511604 CC2D2AQ9P2K1 1620 aa10.24□□□□□ -0.77
CPNE4-208ENST00000511604 RTL5Q5HYW3 569 aaPredicted RBP10.24□□□□□ -0.77
CPNE4-208ENST00000511604 TRIM52Q96A61 297 aa10.22□□□□□ -0.77
CPNE4-208ENST00000511604 IRX6P78412 446 aaPredicted RBP10.21□□□□□ -0.77
CPNE4-208ENST00000511604 PAK3O75914 559 aaPredicted RBP10.21□□□□□ -0.78
CPNE4-208ENST00000511604 GLIPR1L2Q4G1C9 344 aa10.21□□□□□ -0.78
CPNE4-208ENST00000511604 ZMYND15Q9H091 742 aa10.21□□□□□ -0.78
CPNE4-208ENST00000511604 C11orf95C9JLR9 678 aaPredicted RBP10.19□□□□□ -0.78
CPNE4-208ENST00000511604 UBTFP17480 764 aaKnown RBP10.16□□□□□ -0.78
CPNE4-208ENST00000511604 TIMELESSQ9UNS1 1208 aa10.16□□□□□ -0.78
CPNE4-208ENST00000511604 VSIG10Q8N0Z9 540 aa10.14□□□□□ -0.79
CPNE4-208ENST00000511604 RSPH6AQ9H0K4 717 aa10.14□□□□□ -0.79
CPNE4-208ENST00000511604 CUX2O14529 1486 aa10.14□□□□□ -0.79
CPNE4-208ENST00000511604 SOGA1O94964 1423 aa10.14□□□□□ -0.79
CPNE4-208ENST00000511604 DDX10Q13206 875 aaKnown RBP10.13□□□□□ -0.79
CPNE4-208ENST00000511604 DHX57Q6P158 1386 aaKnown RBP10.13□□□□□ -0.79
CPNE4-208ENST00000511604 WASHC2AQ641Q2 1341 aa10.13□□□□□ -0.79
CPNE4-208ENST00000511604 ABCC8Q09428 1581 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms