RNA–Protein interactions for RNA: ENST00000506063.1

TCOF1-208, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 4

Gene TCOF1, Length 526 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-208ENST00000506063 ADCY10Q96PN6 1610 aa6.94□□□□□ -1.3
TCOF1-208ENST00000506063 NUP160Q12769 1436 aa6.94□□□□□ -1.3
TCOF1-208ENST00000506063 COL17A1Q9UMD9 1497 aaPredicted RBP6.94□□□□□ -1.3
TCOF1-208ENST00000506063 SPATA31D1Q6ZQQ2 1576 aa6.94□□□□□ -1.3
TCOF1-208ENST00000506063 CCDC88BA6NC98 1476 aa6.92□□□□□ -1.3
TCOF1-208ENST00000506063 GRIN2AQ12879 1464 aa6.92□□□□□ -1.3
TCOF1-208ENST00000506063 FGD5Q6ZNL6 1462 aa6.92□□□□□ -1.3
TCOF1-208ENST00000506063 ABCA5Q8WWZ7 1642 aa6.9□□□□□ -1.3
TCOF1-208ENST00000506063 TOP2BQ02880 1626 aa6.89□□□□□ -1.31
TCOF1-208ENST00000506063 ADAMTS12P58397 1594 aa6.87□□□□□ -1.31
TCOF1-208ENST00000506063 CUX1P39880 1505 aa6.86□□□□□ -1.31
TCOF1-208ENST00000506063 GLI2P10070 1586 aa6.86□□□□□ -1.31
TCOF1-208ENST00000506063 PRG4Q92954 1404 aaPredicted RBP6.85□□□□□ -1.31
TCOF1-208ENST00000506063 PCF11O94913 1555 aaKnown RBP6.83□□□□□ -1.32
TCOF1-208ENST00000506063 MAP3K4Q9Y6R4 1608 aa6.83□□□□□ -1.32
TCOF1-208ENST00000506063 ABCA10Q8WWZ4 1543 aa6.82□□□□□ -1.32
TCOF1-208ENST00000506063 ADAMTSL3P82987 1691 aa6.82□□□□□ -1.32
TCOF1-208ENST00000506063 CERKQ8TCT0 537 aa6.82□□□□□ -1.32
TCOF1-208ENST00000506063 KIF21BO75037 1637 aa6.82□□□□□ -1.32
TCOF1-208ENST00000506063 PTPRMP28827 1452 aa6.8□□□□□ -1.32
TCOF1-208ENST00000506063 RUSC2Q8N2Y8 1516 aa6.8□□□□□ -1.32
TCOF1-208ENST00000506063 NPM1P06748 294 aaKnown RBP eCLIP6.78□□□□□ -1.32
TCOF1-208ENST00000506063 JPH4Q96JJ6 628 aa6.78□□□□□ -1.32
TCOF1-208ENST00000506063 FHAD1B1AJZ9 1412 aa6.76□□□□□ -1.33
TCOF1-208ENST00000506063 ASXL2Q76L83 1435 aa6.76□□□□□ -1.33
TCOF1-208ENST00000506063 CUL7Q14999 1698 aa6.76□□□□□ -1.33
TCOF1-208ENST00000506063 EPRSP07814 1512 aaKnown RBP6.74□□□□□ -1.33
TCOF1-208ENST00000506063 ABCC2Q92887 1545 aa6.74□□□□□ -1.33
TCOF1-208ENST00000506063 PLB1Q6P1J6 1458 aa6.73□□□□□ -1.33
TCOF1-208ENST00000506063 TEX14Q8IWB6 1497 aa6.73□□□□□ -1.33
TCOF1-208ENST00000506063 BCORL1Q5H9F3 1711 aa6.73□□□□□ -1.33
TCOF1-208ENST00000506063 MADDQ8WXG6 1647 aa6.72□□□□□ -1.33
TCOF1-208ENST00000506063 ERICH3Q5RHP9 1530 aa6.71□□□□□ -1.33
TCOF1-208ENST00000506063 KIAA0586Q9BVV6 1533 aa6.71□□□□□ -1.33
TCOF1-208ENST00000506063 STRCQ7RTU9 1775 aa6.7□□□□□ -1.34
TCOF1-208ENST00000506063 HSPA2P54652 639 aa6.7□□□□□ -1.34
TCOF1-208ENST00000506063 RIMS1Q86UR5 1692 aaKnown RBP6.68□□□□□ -1.34
TCOF1-208ENST00000506063 UHRF1BP1LA0JNW5 1464 aa6.67□□□□□ -1.34
TCOF1-208ENST00000506063 MAGI3Q5TCQ9 1506 aa6.66□□□□□ -1.34
TCOF1-208ENST00000506063 KDM5BQ9UGL1 1544 aa6.66□□□□□ -1.34
TCOF1-208ENST00000506063 ZCCHC11Q5TAX3 1644 aaKnown RBP6.66□□□□□ -1.34
TCOF1-208ENST00000506063 LTBP4Q8N2S1 1624 aa6.66□□□□□ -1.34
TCOF1-208ENST00000506063 MED1Q15648 1581 aaPredicted RBP6.65□□□□□ -1.34
TCOF1-208ENST00000506063 CFAP43Q8NDM7 1665 aa6.65□□□□□ -1.34
TCOF1-208ENST00000506063 PTPRGP23470 1445 aa6.64□□□□□ -1.35
TCOF1-208ENST00000506063 ARAP3Q8WWN8 1544 aa6.64□□□□□ -1.35
TCOF1-208ENST00000506063 SIGLEC1Q9BZZ2 1709 aa6.63□□□□□ -1.35
TCOF1-208ENST00000506063 IQSEC2Q5JU85 1478 aa6.62□□□□□ -1.35
TCOF1-208ENST00000506063 BIVM-ERCC5R4GMW8 1640 aa6.61□□□□□ -1.35
TCOF1-208ENST00000506063 FRMPD1Q5SYB0 1578 aa6.61□□□□□ -1.35
TCOF1-208ENST00000506063 WRNQ14191 1432 aaPredicted RBP eCLIP6.61□□□□□ -1.35
TCOF1-208ENST00000506063 WDR7Q9Y4E6 1490 aa6.6□□□□□ -1.35
TCOF1-208ENST00000506063 UACAQ9BZF9 1416 aa6.6□□□□□ -1.35
TCOF1-208ENST00000506063 PREX1Q8TCU6 1659 aa6.6□□□□□ -1.35
TCOF1-208ENST00000506063 YEATS2Q9ULM3 1422 aa6.59□□□□□ -1.35
TCOF1-208ENST00000506063 TNIKQ9UKE5 1360 aa6.59□□□□□ -1.35
TCOF1-208ENST00000506063 CD109Q6YHK3 1445 aa6.59□□□□□ -1.36
TCOF1-208ENST00000506063 TTC37Q6PGP7 1564 aa6.58□□□□□ -1.36
TCOF1-208ENST00000506063 SRCAPQ6ZRS2 3230 aa6.57□□□□□ -1.36
TCOF1-208ENST00000506063 FER1L4A9Z1Z3 1794 aa6.57□□□□□ -1.36
TCOF1-208ENST00000506063 ARHGEF40Q8TER5 1519 aa6.56□□□□□ -1.36
TCOF1-208ENST00000506063 DISP1Q96F81 1524 aa6.56□□□□□ -1.36
TCOF1-208ENST00000506063 PTPRTO14522 1441 aa6.56□□□□□ -1.36
TCOF1-208ENST00000506063 SETD1BQ9UPS6 1966 aaKnown RBP6.55□□□□□ -1.36
TCOF1-208ENST00000506063 TTBK1Q5TCY1 1321 aaPredicted RBP6.53□□□□□ -1.36
TCOF1-208ENST00000506063 RICTORQ6R327 1708 aa6.53□□□□□ -1.36
TCOF1-208ENST00000506063 RAPGEF3O95398 923 aa6.52□□□□□ -1.37
TCOF1-208ENST00000506063 CARMIL2Q6F5E8 1435 aa6.51□□□□□ -1.37
TCOF1-208ENST00000506063 IQGAP2Q13576 1575 aa6.51□□□□□ -1.37
TCOF1-208ENST00000506063 ABCA9Q8IUA7 1624 aa6.5□□□□□ -1.37
TCOF1-208ENST00000506063 DMRT2Q9Y5R5 561 aa6.5□□□□□ -1.37
TCOF1-208ENST00000506063 ARHGEF12Q9NZN5 1544 aa6.5□□□□□ -1.37
TCOF1-208ENST00000506063 HSPA1LP34931 641 aa6.49□□□□□ -1.37
TCOF1-208ENST00000506063 RGS17Q9UGC6 210 aaPredicted RBP6.49□□□□□ -1.37
TCOF1-208ENST00000506063 ARID4BQ4LE39 1312 aaPredicted RBP6.49□□□□□ -1.37
TCOF1-208ENST00000506063 IGF1RP08069 1367 aa6.48□□□□□ -1.37
TCOF1-208ENST00000506063 PHLDB1Q86UU1 1377 aa6.48□□□□□ -1.37
TCOF1-208ENST00000506063 KIAA0556O60303 1618 aa6.48□□□□□ -1.37
TCOF1-208ENST00000506063 ALKQ9UM73 1620 aa6.48□□□□□ -1.37
TCOF1-208ENST00000506063 PLPPR3Q6T4P5 718 aa6.48□□□□□ -1.37
TCOF1-208ENST00000506063 ABCA8O94911 1581 aa6.48□□□□□ -1.37
TCOF1-208ENST00000506063 NEO1Q92859 1461 aa6.47□□□□□ -1.37
TCOF1-208ENST00000506063 UGGT2Q9NYU1 1516 aa6.47□□□□□ -1.37
TCOF1-208ENST00000506063 UBAP1LF5GYI3 381 aa6.47□□□□□ -1.37
TCOF1-208ENST00000506063 SETD1AO15047 1707 aaKnown RBP6.47□□□□□ -1.37
TCOF1-208ENST00000506063 FANCAO15360 1455 aa6.47□□□□□ -1.37
TCOF1-208ENST00000506063 ZMYM4Q5VZL5 1548 aa6.46□□□□□ -1.37
TCOF1-208ENST00000506063 NCOA1Q15788 1441 aa6.46□□□□□ -1.38
TCOF1-208ENST00000506063 KCNH8Q96L42 1107 aa6.46□□□□□ -1.38
TCOF1-208ENST00000506063 UHRF1BP1Q6BDS2 1440 aa6.45□□□□□ -1.38
TCOF1-208ENST00000506063 FHOD3Q2V2M9 1422 aa6.44□□□□□ -1.38
TCOF1-208ENST00000506063 POGZQ7Z3K3 1410 aa6.44□□□□□ -1.38
TCOF1-208ENST00000506063 CEBPAP49715 358 aaPredicted RBP6.44□□□□□ -1.38
TCOF1-208ENST00000506063 C3P01024 1663 aa6.44□□□□□ -1.38
TCOF1-208ENST00000506063 ZNF335Q9H4Z2 1342 aaPredicted RBP6.44□□□□□ -1.38
TCOF1-208ENST00000506063 ZFYVE16Q7Z3T8 1539 aa6.42□□□□□ -1.38
TCOF1-208ENST00000506063 PHF23Q9BUL5 403 aaPredicted RBP6.42□□□□□ -1.38
TCOF1-208ENST00000506063 AKNAQ7Z591 1439 aa6.42□□□□□ -1.38
TCOF1-208ENST00000506063 EFCAB5A4FU69 1503 aa6.41□□□□□ -1.38
TCOF1-208ENST00000506063 CAMSAP1Q5T5Y3 1602 aa6.4□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms