RNA–Protein interactions for RNA: ENST00000506063.1

TCOF1-208, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 4

Gene TCOF1, Length 526 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-208ENST00000506063 NISCHQ9Y2I1 1504 aa9.42□□□□□ -0.9
TCOF1-208ENST00000506063 DNAJC5BQ9UF47 199 aa9.22□□□□□ -0.93
TCOF1-208ENST00000506063 ABCC9O60706 1549 aa9.21□□□□□ -0.93
TCOF1-208ENST00000506063 DNAJC5Q9H3Z4 198 aa8.81□□□□□ -1
TCOF1-208ENST00000506063 CCDC180Q9P1Z9 1646 aa8.73□□□□□ -1.01
TCOF1-208ENST00000506063 RB1CC1Q8TDY2 1594 aa8.52□□□□□ -1.04
TCOF1-208ENST00000506063 UNC13AQ9UPW8 1703 aa8.49□□□□□ -1.05
TCOF1-208ENST00000506063 PABPN1Q86U42 306 aaKnown RBP eCLIP8.45□□□□□ -1.06
TCOF1-208ENST00000506063 BICRAQ9NZM4 1560 aa8.41□□□□□ -1.06
TCOF1-208ENST00000506063 CECR2Q9BXF3 1484 aa8.35□□□□□ -1.07
TCOF1-208ENST00000506063 NACADO15069 1562 aa8.35□□□□□ -1.07
TCOF1-208ENST00000506063 CC2D2AQ9P2K1 1620 aa8.34□□□□□ -1.07
TCOF1-208ENST00000506063 EIF4G1Q04637 1599 aaKnown RBP8.18□□□□□ -1.1
TCOF1-208ENST00000506063 CUX2O14529 1486 aa8.18□□□□□ -1.1
TCOF1-208ENST00000506063 SHROOM4Q9ULL8 1493 aa8.15□□□□□ -1.1
TCOF1-208ENST00000506063 TRIM41Q8WV44 630 aa8.09□□□□□ -1.11
TCOF1-208ENST00000506063 MYO15BQ96JP2 1530 aa8.08□□□□□ -1.12
TCOF1-208ENST00000506063 DCAF8L2P0C7V8 631 aa7.99□□□□□ -1.13
TCOF1-208ENST00000506063 ERCC6Q03468 1493 aa7.93□□□□□ -1.14
TCOF1-208ENST00000506063 THOC2Q8NI27 1593 aaKnown RBP7.88□□□□□ -1.15
TCOF1-208ENST00000506063 SCRIBQ14160 1630 aa7.87□□□□□ -1.15
TCOF1-208ENST00000506063 NESP48681 1621 aa7.8□□□□□ -1.16
TCOF1-208ENST00000506063 DCAF1Q9Y4B6 1507 aa7.77□□□□□ -1.17
TCOF1-208ENST00000506063 BAZ1AQ9NRL2 1556 aaPredicted RBP7.73□□□□□ -1.17
TCOF1-208ENST00000506063 RIMBP3CA6NJZ7 1639 aa7.72□□□□□ -1.17
TCOF1-208ENST00000506063 RIMBP3BA6NNM3 1639 aa7.72□□□□□ -1.17
TCOF1-208ENST00000506063 RIMBP3Q9UFD9 1639 aa7.72□□□□□ -1.17
TCOF1-208ENST00000506063 NCAPD3P42695 1498 aa7.72□□□□□ -1.17
TCOF1-208ENST00000506063 KIF21AQ7Z4S6 1674 aa7.71□□□□□ -1.18
TCOF1-208ENST00000506063 ZCCHC6Q5VYS8 1495 aaKnown RBP7.7□□□□□ -1.18
TCOF1-208ENST00000506063 SMARCA2P51531 1590 aa7.69□□□□□ -1.18
TCOF1-208ENST00000506063 AEBP2Q6ZN18 517 aaPredicted RBP7.69□□□□□ -1.18
TCOF1-208ENST00000506063 OSCARQ8IYS5 282 aa7.63□□□□□ -1.19
TCOF1-208ENST00000506063 LAMC3Q9Y6N6 1575 aa7.63□□□□□ -1.19
TCOF1-208ENST00000506063 HMGXB3Q12766 1538 aa7.62□□□□□ -1.19
TCOF1-208ENST00000506063 ATAD2BQ9ULI0 1458 aa7.62□□□□□ -1.19
TCOF1-208ENST00000506063 ILDR1Q86SU0 546 aaPredicted RBP7.61□□□□□ -1.19
TCOF1-208ENST00000506063 ARHGEF11O15085 1522 aa7.61□□□□□ -1.19
TCOF1-208ENST00000506063 WDR62O43379 1518 aa7.6□□□□□ -1.19
TCOF1-208ENST00000506063 MRC2Q9UBG0 1479 aa7.55□□□□□ -1.2
TCOF1-208ENST00000506063 PDS5BQ9NTI5 1447 aa7.53□□□□□ -1.2
TCOF1-208ENST00000506063 TRHP20396 242 aaPredicted RBP7.52□□□□□ -1.21
TCOF1-208ENST00000506063 ARAP1Q96P48 1450 aa7.51□□□□□ -1.21
TCOF1-208ENST00000506063 CYB5RLQ6IPT4 315 aa7.49□□□□□ -1.21
TCOF1-208ENST00000506063 SMARCA4P51532 1647 aa7.49□□□□□ -1.21
TCOF1-208ENST00000506063 BAZ1BQ9UIG0 1483 aaKnown RBP7.46□□□□□ -1.22
TCOF1-208ENST00000506063 PEG3Q9GZU2 1588 aa7.45□□□□□ -1.22
TCOF1-208ENST00000506063 CADPSQ9ULU8 1353 aa7.42□□□□□ -1.22
TCOF1-208ENST00000506063 CEP164Q9UPV0 1460 aa7.39□□□□□ -1.23
TCOF1-208ENST00000506063 CHD1O14646 1710 aa7.38□□□□□ -1.23
TCOF1-208ENST00000506063 URB2Q14146 1524 aaKnown RBP7.37□□□□□ -1.23
TCOF1-208ENST00000506063 ZNF608Q9ULD9 1512 aaPredicted RBP7.37□□□□□ -1.23
TCOF1-208ENST00000506063 RSF1Q96T23 1441 aaPredicted RBP7.35□□□□□ -1.23
TCOF1-208ENST00000506063 FANCD2Q9BXW9 1451 aa7.35□□□□□ -1.23
TCOF1-208ENST00000506063 EIF4G3O43432 1585 aaKnown RBP7.3□□□□□ -1.24
TCOF1-208ENST00000506063 KDM4FA0A1W2PPD8 638 aa7.29□□□□□ -1.24
TCOF1-208ENST00000506063 CLASP1Q7Z460 1538 aa7.28□□□□□ -1.24
TCOF1-208ENST00000506063 KIF13AQ9H1H9 1805 aa7.28□□□□□ -1.24
TCOF1-208ENST00000506063 MROH2BQ7Z745 1585 aa7.27□□□□□ -1.25
TCOF1-208ENST00000506063 IFT140Q96RY7 1462 aa7.26□□□□□ -1.25
TCOF1-208ENST00000506063 CFTRP13569 1480 aa7.25□□□□□ -1.25
TCOF1-208ENST00000506063 ERCC6L2Q5T890 1561 aa7.22□□□□□ -1.25
TCOF1-208ENST00000506063 PRDM2Q13029 1718 aa7.21□□□□□ -1.26
TCOF1-208ENST00000506063 HECW2Q9P2P5 1572 aa7.2□□□□□ -1.26
TCOF1-208ENST00000506063 TARBP1Q13395 1621 aaKnown RBP7.19□□□□□ -1.26
TCOF1-208ENST00000506063 AQRO60306 1485 aaKnown RBP eCLIP7.18□□□□□ -1.267e-8■■■■■ 37.3
TCOF1-208ENST00000506063 GAPVD1Q14C86 1478 aa7.17□□□□□ -1.26
TCOF1-208ENST00000506063 TOPBP1Q92547 1522 aa7.17□□□□□ -1.26
TCOF1-208ENST00000506063 WIZO95785 1651 aa7.16□□□□□ -1.26
TCOF1-208ENST00000506063 FBXO41Q8TF61 875 aa7.16□□□□□ -1.26
TCOF1-208ENST00000506063 LMTK3Q96Q04 1460 aa7.16□□□□□ -1.26
TCOF1-208ENST00000506063 SYNJ1O43426 1573 aa7.14□□□□□ -1.27
TCOF1-208ENST00000506063 SOCS7O14512 581 aa7.13□□□□□ -1.27
TCOF1-208ENST00000506063 ILDR2Q71H61 639 aa7.13□□□□□ -1.27
TCOF1-208ENST00000506063 FBLN2P98095 1184 aa7.12□□□□□ -1.27
TCOF1-208ENST00000506063 SNAPC4Q5SXM2 1469 aa7.1□□□□□ -1.27
TCOF1-208ENST00000506063 KDM6BO15054 1643 aa7.09□□□□□ -1.27
TCOF1-208ENST00000506063 ADGRL1O94910 1474 aa7.09□□□□□ -1.27
TCOF1-208ENST00000506063 DNMBPQ6XZF7 1577 aa7.08□□□□□ -1.28
TCOF1-208ENST00000506063 DIP2BQ9P265 1576 aa7.07□□□□□ -1.28
TCOF1-208ENST00000506063 SYNJ2O15056 1496 aa7.06□□□□□ -1.28
TCOF1-208ENST00000506063 POLA1P09884 1462 aaPredicted RBP7.06□□□□□ -1.28
TCOF1-208ENST00000506063 ABCC10Q5T3U5 1492 aa7.05□□□□□ -1.28
TCOF1-208ENST00000506063 MAGI1Q96QZ7 1491 aaPredicted RBP7.05□□□□□ -1.28
TCOF1-208ENST00000506063 ABCC8Q09428 1581 aa7.05□□□□□ -1.28
TCOF1-208ENST00000506063 WDR97A6NE52 1622 aa7.04□□□□□ -1.28
TCOF1-208ENST00000506063 TSPOAP1O95153 1857 aa7.04□□□□□ -1.28
TCOF1-208ENST00000506063 RAD54L2Q9Y4B4 1467 aa7.04□□□□□ -1.28
TCOF1-208ENST00000506063 TDRD9Q8NDG6 1382 aaKnown RBP7.03□□□□□ -1.28
TCOF1-208ENST00000506063 CEP170Q5SW79 1584 aa7.02□□□□□ -1.29
TCOF1-208ENST00000506063 SHROOM2Q13796 1616 aa7.01□□□□□ -1.29
TCOF1-208ENST00000506063 MAPKBP1O60336 1514 aa7.01□□□□□ -1.29
TCOF1-208ENST00000506063 CHMP7Q8WUX9 453 aaPredicted RBP7□□□□□ -1.29
TCOF1-208ENST00000506063 TOP2AP11388 1531 aaKnown RBP7□□□□□ -1.29
TCOF1-208ENST00000506063 PPRC1Q5VV67 1664 aaKnown RBP7□□□□□ -1.29
TCOF1-208ENST00000506063 FAM69CQ0P6D2 419 aa6.99□□□□□ -1.29
TCOF1-208ENST00000506063 PBRM1Q86U86 1689 aa6.99□□□□□ -1.29
TCOF1-208ENST00000506063 GRIN2BQ13224 1484 aa6.98□□□□□ -1.29
TCOF1-208ENST00000506063 DISP3Q9P2K9 1392 aa6.96□□□□□ -1.29
TCOF1-208ENST00000506063 SOGA1O94964 1423 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 89 ms