RNA–Protein interactions for RNA: ENST00000495100.1

GPC1-209, Transcript of glypican 1, humanhuman

TSL 1 (best)

Gene GPC1, Length 3,525 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-209ENST00000495100 ARAP1Q96P48 1450 aa18.98■□□□□ 0.63
GPC1-209ENST00000495100 BICRAQ9NZM4 1560 aa18.97■□□□□ 0.63
GPC1-209ENST00000495100 HNRNPUQ00839 825 aaKnown RBP eCLIP18.97■□□□□ 0.63
GPC1-209ENST00000495100 TONSLQ96HA7 1378 aa18.96■□□□□ 0.63
GPC1-209ENST00000495100 FAM9BQ8IZU0 186 aa18.95■□□□□ 0.62
GPC1-209ENST00000495100 TDRD9Q8NDG6 1382 aaKnown RBP18.95■□□□□ 0.62
GPC1-209ENST00000495100 MTUS2Q5JR59 1369 aa18.94■□□□□ 0.62
GPC1-209ENST00000495100 EIF4G1Q04637 1599 aaKnown RBP18.93■□□□□ 0.62
GPC1-209ENST00000495100 FHOD3Q2V2M9 1422 aa18.93■□□□□ 0.62
GPC1-209ENST00000495100 SALL2Q9Y467 1007 aaPredicted RBP18.89■□□□□ 0.61
GPC1-209ENST00000495100 IGF1RP08069 1367 aa18.84■□□□□ 0.61
GPC1-209ENST00000495100 PHLDB1Q86UU1 1377 aa18.82■□□□□ 0.6
GPC1-209ENST00000495100 RAD54L2Q9Y4B4 1467 aa18.82■□□□□ 0.6
GPC1-209ENST00000495100 ERICH6Q7L0X2 663 aa18.82■□□□□ 0.6
GPC1-209ENST00000495100 KDM2AQ9Y2K7 1162 aa18.78■□□□□ 0.6
GPC1-209ENST00000495100 SETD5Q9C0A6 1442 aa18.77■□□□□ 0.6
GPC1-209ENST00000495100 CUX1P39880 1505 aa18.77■□□□□ 0.59
GPC1-209ENST00000495100 ARHGAP35Q9NRY4 1499 aa18.76■□□□□ 0.59
GPC1-209ENST00000495100 CADPSQ9ULU8 1353 aa18.73■□□□□ 0.59
GPC1-209ENST00000495100 NESP48681 1621 aa18.71■□□□□ 0.59
GPC1-209ENST00000495100 PRXQ9BXM0 1461 aa18.71■□□□□ 0.59
GPC1-209ENST00000495100 PPP1R15AO75807 674 aaPredicted RBP18.7■□□□□ 0.58
GPC1-209ENST00000495100 MYT1LQ9UL68 1186 aa18.7■□□□□ 0.58
GPC1-209ENST00000495100 FGD5Q6ZNL6 1462 aa18.7■□□□□ 0.58
GPC1-209ENST00000495100 TSHZ2Q9NRE2 1034 aa18.69■□□□□ 0.58
GPC1-209ENST00000495100 SLC4A1APQ9BWU0 796 aaKnown RBP18.68■□□□□ 0.58
GPC1-209ENST00000495100 MRS2Q9HD23 443 aa18.68■□□□□ 0.58
GPC1-209ENST00000495100 CLSPNQ9HAW4 1339 aa18.67■□□□□ 0.58
GPC1-209ENST00000495100 SENP3Q9H4L4 574 aaPredicted RBP18.67■□□□□ 0.58
GPC1-209ENST00000495100 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.64■□□□□ 0.57
GPC1-209ENST00000495100 HSPA5P11021 654 aaKnown RBP18.63■□□□□ 0.57
GPC1-209ENST00000495100 TOP2BQ02880 1626 aa18.63■□□□□ 0.57
GPC1-209ENST00000495100 ZNF644Q9H582 1327 aaPredicted RBP18.6■□□□□ 0.57
GPC1-209ENST00000495100 RGL3Q3MIN7 710 aa18.6■□□□□ 0.57
GPC1-209ENST00000495100 EIF4G2P78344 907 aaKnown RBP eCLIP18.59■□□□□ 0.57
GPC1-209ENST00000495100 FANCD2Q9BXW9 1451 aa18.58■□□□□ 0.56
GPC1-209ENST00000495100 NCAPD3P42695 1498 aa18.58■□□□□ 0.56
GPC1-209ENST00000495100 B4GALNT3Q6L9W6 998 aa18.57■□□□□ 0.56
GPC1-209ENST00000495100 L3MBTL2Q969R5 705 aa18.57■□□□□ 0.56
GPC1-209ENST00000495100 FHAD1B1AJZ9 1412 aa18.56■□□□□ 0.56
GPC1-209ENST00000495100 CCDC184Q52MB2 194 aa18.55■□□□□ 0.56
GPC1-209ENST00000495100 CFTRP13569 1480 aa18.55■□□□□ 0.56
GPC1-209ENST00000495100 CHMP7Q8WUX9 453 aaPredicted RBP18.54■□□□□ 0.56
GPC1-209ENST00000495100 CDK11AQ9UQ88 783 aaPredicted RBP18.54■□□□□ 0.56
GPC1-209ENST00000495100 RRBP1Q9P2E9 1410 aaKnown RBP18.52■□□□□ 0.56
GPC1-209ENST00000495100 WDR97A6NE52 1622 aa18.52■□□□□ 0.56
GPC1-209ENST00000495100 LRRC9Q6ZRR7 1453 aa18.52■□□□□ 0.56
GPC1-209ENST00000495100 MPHOSPH9Q99550 1183 aa18.5■□□□□ 0.55
GPC1-209ENST00000495100 CFDP1Q9UEE9 299 aaPredicted RBP18.48■□□□□ 0.55
GPC1-209ENST00000495100 NPM2Q86SE8 214 aaKnown RBP18.48■□□□□ 0.55
GPC1-209ENST00000495100 RBM19Q9Y4C8 960 aaKnown RBP18.48■□□□□ 0.55
GPC1-209ENST00000495100 PDS5BQ9NTI5 1447 aa18.42■□□□□ 0.54
GPC1-209ENST00000495100 ERICH3Q5RHP9 1530 aa18.42■□□□□ 0.54
GPC1-209ENST00000495100 NBR1Q14596 966 aa18.42■□□□□ 0.54
GPC1-209ENST00000495100 PEG3Q9GZU2 1588 aa18.41■□□□□ 0.54
GPC1-209ENST00000495100 AQRO60306 1485 aaKnown RBP eCLIP18.41■□□□□ 0.54
GPC1-209ENST00000495100 TMC1Q8TDI8 760 aa18.4■□□□□ 0.54
GPC1-209ENST00000495100 CCDC18Q5T9S5 1454 aa18.39■□□□□ 0.53
GPC1-209ENST00000495100 C11orf95C9JLR9 678 aaPredicted RBP18.39■□□□□ 0.53
GPC1-209ENST00000495100 MYT1Q01538 1121 aa18.38■□□□□ 0.53
GPC1-209ENST00000495100 WASHC2AQ641Q2 1341 aa18.38■□□□□ 0.53
GPC1-209ENST00000495100 PKD2Q13563 968 aa18.37■□□□□ 0.53
GPC1-209ENST00000495100 FGD6Q6ZV73 1430 aa18.36■□□□□ 0.53
GPC1-209ENST00000495100 POLA1P09884 1462 aaPredicted RBP18.35■□□□□ 0.53
GPC1-209ENST00000495100 ANP32EQ9BTT0 268 aa18.35■□□□□ 0.53
GPC1-209ENST00000495100 DCAF11Q8TEB1 546 aa18.34■□□□□ 0.53
GPC1-209ENST00000495100 TIAM1Q13009 1591 aa18.34■□□□□ 0.53
GPC1-209ENST00000495100 FMN1Q68DA7 1419 aa18.34■□□□□ 0.53
GPC1-209ENST00000495100 CARD11Q9BXL7 1154 aa18.33■□□□□ 0.53
GPC1-209ENST00000495100 NBPF8Q3BBV2 869 aa18.33■□□□□ 0.52
GPC1-209ENST00000495100 PTPRKQ15262 1439 aa18.32■□□□□ 0.52
GPC1-209ENST00000495100 MAPKBP1O60336 1514 aa18.32■□□□□ 0.52
GPC1-209ENST00000495100 TSPY4P0CV99 314 aa18.32■□□□□ 0.52
GPC1-209ENST00000495100 TSPY10P0CW01 314 aa18.32■□□□□ 0.52
GPC1-209ENST00000495100 CCDC136Q96JN2 1154 aa18.31■□□□□ 0.52
GPC1-209ENST00000495100 CCER2I3L3R5 266 aa18.3■□□□□ 0.52
GPC1-209ENST00000495100 CC2D2AQ9P2K1 1620 aa18.3■□□□□ 0.52
GPC1-209ENST00000495100 PCF11O94913 1555 aaKnown RBP18.3■□□□□ 0.52
GPC1-209ENST00000495100 HNRNPMP52272 730 aaKnown RBP eCLIP18.3■□□□□ 0.52
GPC1-209ENST00000495100 CC2D1BQ5T0F9 858 aaKnown RBP18.29■□□□□ 0.52
GPC1-209ENST00000495100 BCL11AQ9H165 835 aa18.28■□□□□ 0.52
GPC1-209ENST00000495100 PLEKHD1A6NEE1 506 aa18.27■□□□□ 0.52
GPC1-209ENST00000495100 GAPVD1Q14C86 1478 aa18.27■□□□□ 0.52
GPC1-209ENST00000495100 NCOA2Q15596 1464 aa18.27■□□□□ 0.51
GPC1-209ENST00000495100 TOPBP1Q92547 1522 aa18.26■□□□□ 0.51
GPC1-209ENST00000495100 BIVM-ERCC5R4GMW8 1640 aa18.25■□□□□ 0.51
GPC1-209ENST00000495100 PRKRIP1Q9H875 184 aaPredicted RBP18.24■□□□□ 0.51
GPC1-209ENST00000495100 TIMELESSQ9UNS1 1208 aa18.24■□□□□ 0.51
GPC1-209ENST00000495100 HMGXB3Q12766 1538 aa18.24■□□□□ 0.51
GPC1-209ENST00000495100 CHGAP10645 457 aaKnown RBP18.23■□□□□ 0.51
GPC1-209ENST00000495100 CASKIN1Q8WXD9 1431 aa18.21■□□□□ 0.51
GPC1-209ENST00000495100 MYOM3Q5VTT5 1437 aa18.19■□□□□ 0.5
GPC1-209ENST00000495100 ST20-MTHFSA0A0A6YYL1 179 aa18.19■□□□□ 0.5
GPC1-209ENST00000495100 CDK13Q14004 1512 aaKnown RBP18.18■□□□□ 0.5
GPC1-209ENST00000495100 NAIPQ13075 1403 aa18.17■□□□□ 0.5
GPC1-209ENST00000495100 NUP155O75694 1391 aa18.17■□□□□ 0.5
GPC1-209ENST00000495100 KIF7Q2M1P5 1343 aa18.16■□□□□ 0.5
GPC1-209ENST00000495100 UACAQ9BZF9 1416 aa18.16■□□□□ 0.5
GPC1-209ENST00000495100 JPH4Q96JJ6 628 aa18.13■□□□□ 0.49
GPC1-209ENST00000495100 PPP4R2Q9NY27 417 aa18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms