RNA–Protein interactions for RNA: ENST00000495100.1

GPC1-209, Transcript of glypican 1, humanhuman

TSL 1 (best)

Gene GPC1, Length 3,525 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-209ENST00000495100 NISCHQ9Y2I1 1504 aa25.7■■□□□ 1.7
GPC1-209ENST00000495100 SHROOM4Q9ULL8 1493 aa23.99■■□□□ 1.43
GPC1-209ENST00000495100 DCAF8L2P0C7V8 631 aa23.98■■□□□ 1.43
GPC1-209ENST00000495100 SUPT5HO00267 1087 aaKnown RBP23.75■■□□□ 1.39
GPC1-209ENST00000495100 EHMT2Q96KQ7 1210 aa22.77■■□□□ 1.24
GPC1-209ENST00000495100 PCGF6Q9BYE7 350 aa22.41■■□□□ 1.18
GPC1-209ENST00000495100 FAM9AQ8IZU1 332 aaPredicted RBP22.27■■□□□ 1.16
GPC1-209ENST00000495100 LOC105371045A0A1W2PR82 267 aa22.19■■□□□ 1.14
GPC1-209ENST00000495100 CHIC1Q5VXU3 224 aa22.14■■□□□ 1.14
GPC1-209ENST00000495100 PPARGC1BQ86YN6 1023 aaKnown RBP22.01■■□□□ 1.11
GPC1-209ENST00000495100 TTBK1Q5TCY1 1321 aaPredicted RBP21.91■■□□□ 1.1
GPC1-209ENST00000495100 MYO15BQ96JP2 1530 aa21.71■■□□□ 1.07
GPC1-209ENST00000495100 HRCP23327 699 aa21.66■■□□□ 1.06
GPC1-209ENST00000495100 TRIM41Q8WV44 630 aa21.64■■□□□ 1.05
GPC1-209ENST00000495100 ZCCHC6Q5VYS8 1495 aaKnown RBP21.53■■□□□ 1.04
GPC1-209ENST00000495100 RANGAP1P46060 587 aaPredicted RBP21.37■■□□□ 1.01
GPC1-209ENST00000495100 ABCC9O60706 1549 aa21.24■□□□□ 0.99
GPC1-209ENST00000495100 TRIM26Q12899 539 aaPredicted RBP21.21■□□□□ 0.99
GPC1-209ENST00000495100 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.05■□□□□ 0.96
GPC1-209ENST00000495100 SCRIBQ14160 1630 aa21.01■□□□□ 0.95
GPC1-209ENST00000495100 CCER1Q8TC90 406 aaPredicted RBP21.01■□□□□ 0.95
GPC1-209ENST00000495100 PABPN1Q86U42 306 aaKnown RBP eCLIP20.96■□□□□ 0.95
GPC1-209ENST00000495100 UBTFP17480 764 aaKnown RBP20.95■□□□□ 0.94
GPC1-209ENST00000495100 CCDC180Q9P1Z9 1646 aa20.92■□□□□ 0.94
GPC1-209ENST00000495100 YTHDC1Q96MU7 727 aaKnown RBP20.74■□□□□ 0.91
GPC1-209ENST00000495100 RSF1Q96T23 1441 aaPredicted RBP20.73■□□□□ 0.91
GPC1-209ENST00000495100 HNRNPUL2Q1KMD3 747 aaKnown RBP20.68■□□□□ 0.9
GPC1-209ENST00000495100 CECR2Q9BXF3 1484 aa20.63■□□□□ 0.89
GPC1-209ENST00000495100 ZEB1P37275 1124 aaPredicted RBP20.61■□□□□ 0.89
GPC1-209ENST00000495100 DCAF1Q9Y4B6 1507 aa20.57■□□□□ 0.88
GPC1-209ENST00000495100 APLP2Q06481 763 aa20.52■□□□□ 0.88
GPC1-209ENST00000495100 RB1CC1Q8TDY2 1594 aa20.49■□□□□ 0.87
GPC1-209ENST00000495100 ITGAEP38570 1179 aa20.46■□□□□ 0.87
GPC1-209ENST00000495100 ATP1B4Q9UN42 357 aaPredicted RBP20.4■□□□□ 0.86
GPC1-209ENST00000495100 DIEXFQ68CQ4 756 aaKnown RBP20.33■□□□□ 0.85
GPC1-209ENST00000495100 MROH2BQ7Z745 1585 aa20.29■□□□□ 0.84
GPC1-209ENST00000495100 SCAF1Q9H7N4 1312 aaKnown RBP20.27■□□□□ 0.83
GPC1-209ENST00000495100 CSRNP3Q8WYN3 585 aa20.23■□□□□ 0.83
GPC1-209ENST00000495100 GTF3C3Q9Y5Q9 886 aa20.16■□□□□ 0.82
GPC1-209ENST00000495100 NEUROD1Q13562 356 aa20.16■□□□□ 0.82
GPC1-209ENST00000495100 ABCC8Q09428 1581 aa20.14■□□□□ 0.81
GPC1-209ENST00000495100 WIZO95785 1651 aa20.13■□□□□ 0.81
GPC1-209ENST00000495100 CENPBP07199 599 aaPredicted RBP20.13■□□□□ 0.81
GPC1-209ENST00000495100 SOGA1O94964 1423 aa20.12■□□□□ 0.81
GPC1-209ENST00000495100 CCDC88BA6NC98 1476 aa20.04■□□□□ 0.8
GPC1-209ENST00000495100 P3H3Q8IVL6 736 aa20■□□□□ 0.79
GPC1-209ENST00000495100 RUSC2Q8N2Y8 1516 aa19.97■□□□□ 0.79
GPC1-209ENST00000495100 CEP162Q5TB80 1403 aa19.96■□□□□ 0.79
GPC1-209ENST00000495100 ACIN1Q9UKV3 1341 aaKnown RBP19.96■□□□□ 0.79
GPC1-209ENST00000495100 ZNF316A6NFI3 1004 aaPredicted RBP19.89■□□□□ 0.77
GPC1-209ENST00000495100 MIER1Q8N108 512 aa19.87■□□□□ 0.77
GPC1-209ENST00000495100 NACADO15069 1562 aa19.83■□□□□ 0.76
GPC1-209ENST00000495100 CNGB1Q14028 1251 aaPredicted RBP19.82■□□□□ 0.76
GPC1-209ENST00000495100 FAM50AQ14320 339 aaKnown RBP19.79■□□□□ 0.76
GPC1-209ENST00000495100 ARID3CA6NKF2 412 aa19.77■□□□□ 0.75
GPC1-209ENST00000495100 HIRIP3Q9BW71 556 aaPredicted RBP19.77■□□□□ 0.75
GPC1-209ENST00000495100 BCANQ96GW7 911 aa19.71■□□□□ 0.75
GPC1-209ENST00000495100 BAZ1AQ9NRL2 1556 aaPredicted RBP19.71■□□□□ 0.75
GPC1-209ENST00000495100 WRNQ14191 1432 aaPredicted RBP eCLIP19.71■□□□□ 0.75
GPC1-209ENST00000495100 CLIP1P30622 1438 aa19.69■□□□□ 0.74
GPC1-209ENST00000495100 KANK4Q5T7N3 995 aaPredicted RBP19.63■□□□□ 0.73
GPC1-209ENST00000495100 TNIKQ9UKE5 1360 aa19.63■□□□□ 0.73
GPC1-209ENST00000495100 GOLGA3Q08378 1498 aa19.54■□□□□ 0.72
GPC1-209ENST00000495100 PELP1Q8IZL8 1130 aaKnown RBP19.53■□□□□ 0.72
GPC1-209ENST00000495100 DDX10Q13206 875 aaKnown RBP19.46■□□□□ 0.71
GPC1-209ENST00000495100 BAZ1BQ9UIG0 1483 aaKnown RBP19.46■□□□□ 0.71
GPC1-209ENST00000495100 RAPGEF2Q9Y4G8 1499 aa19.45■□□□□ 0.7
GPC1-209ENST00000495100 POLR3GLQ9BT43 218 aa19.45■□□□□ 0.7
GPC1-209ENST00000495100 TOP2AP11388 1531 aaKnown RBP19.45■□□□□ 0.7
GPC1-209ENST00000495100 SMARCA4P51532 1647 aa19.43■□□□□ 0.7
GPC1-209ENST00000495100 SIN3AQ96ST3 1273 aa19.43■□□□□ 0.7
GPC1-209ENST00000495100 SMARCA2P51531 1590 aa19.42■□□□□ 0.7
GPC1-209ENST00000495100 KCNH8Q96L42 1107 aa19.39■□□□□ 0.69
GPC1-209ENST00000495100 SENP3-EIF4A1A0A087X0R7 540 aa19.38■□□□□ 0.69
GPC1-209ENST00000495100 TRIM52Q96A61 297 aa19.35■□□□□ 0.69
GPC1-209ENST00000495100 CEP164Q9UPV0 1460 aa19.35■□□□□ 0.69
GPC1-209ENST00000495100 CHIC2Q9UKJ5 165 aa19.34■□□□□ 0.69
GPC1-209ENST00000495100 EEA1Q15075 1411 aa19.28■□□□□ 0.68
GPC1-209ENST00000495100 VPS8Q8N3P4 1428 aa19.26■□□□□ 0.67
GPC1-209ENST00000495100 ATAD2BQ9ULI0 1458 aa19.23■□□□□ 0.67
GPC1-209ENST00000495100 ZNF326Q5BKZ1 582 aaKnown RBP19.21■□□□□ 0.67
GPC1-209ENST00000495100 IRX6P78412 446 aaPredicted RBP19.2■□□□□ 0.66
GPC1-209ENST00000495100 SYNJ1O43426 1573 aa19.2■□□□□ 0.66
GPC1-209ENST00000495100 NEFLP07196 543 aa19.17■□□□□ 0.66
GPC1-209ENST00000495100 FBLN2P98095 1184 aa19.17■□□□□ 0.66
GPC1-209ENST00000495100 FKBP8Q14318 412 aa19.17■□□□□ 0.66
GPC1-209ENST00000495100 RRP7BPQ9NSQ0 103 aa19.16■□□□□ 0.66
GPC1-209ENST00000495100 CUX2O14529 1486 aa19.11■□□□□ 0.65
GPC1-209ENST00000495100 KIF27Q86VH2 1401 aa19.1■□□□□ 0.65
GPC1-209ENST00000495100 CCNB3Q8WWL7 1395 aa19.07■□□□□ 0.64
GPC1-209ENST00000495100 DHX57Q6P158 1386 aaKnown RBP19.06■□□□□ 0.64
GPC1-209ENST00000495100 ZNF777Q9ULD5 760 aaPredicted RBP19.05■□□□□ 0.64
GPC1-209ENST00000495100 ANP32CO43423 234 aa19.05■□□□□ 0.64
GPC1-209ENST00000495100 FOXD1Q16676 465 aa19.04■□□□□ 0.64
GPC1-209ENST00000495100 SUPT16HQ9Y5B9 1047 aaKnown RBP19.02■□□□□ 0.64
GPC1-209ENST00000495100 RAB3GAP2Q9H2M9 1393 aa19.02■□□□□ 0.64
GPC1-209ENST00000495100 CARMIL1Q5VZK9 1371 aa19.01■□□□□ 0.63
GPC1-209ENST00000495100 KIF21BO75037 1637 aa18.99■□□□□ 0.63
GPC1-209ENST00000495100 DNAJC5BQ9UF47 199 aa18.98■□□□□ 0.63
GPC1-209ENST00000495100 UNC13AQ9UPW8 1703 aa18.98■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 235.2 ms