RNA–Protein interactions for RNA: ENST00000489816.5

BRD9-208, Transcript of bromodomain containing 9, humanhuman

TSL 1 (best)

Gene BRD9, Length 3,170 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRD9-208ENST00000489816 SIN3AQ96ST3 1273 aa22.91■■□□□ 1.26
BRD9-208ENST00000489816 RAB3GAP2Q9H2M9 1393 aa22.9■■□□□ 1.26
BRD9-208ENST00000489816 PHLDB1Q86UU1 1377 aa22.9■■□□□ 1.26
BRD9-208ENST00000489816 POLA1P09884 1462 aaPredicted RBP22.85■■□□□ 1.25
BRD9-208ENST00000489816 ARID3CA6NKF2 412 aa22.85■■□□□ 1.25
BRD9-208ENST00000489816 HIRIP3Q9BW71 556 aaPredicted RBP22.84■■□□□ 1.25
BRD9-208ENST00000489816 TOPBP1Q92547 1522 aa22.81■■□□□ 1.24
BRD9-208ENST00000489816 CLSPNQ9HAW4 1339 aa22.8■■□□□ 1.24
BRD9-208ENST00000489816 PRDM2Q13029 1718 aa22.8■■□□□ 1.24
BRD9-208ENST00000489816 LRRC9Q6ZRR7 1453 aa22.8■■□□□ 1.24
BRD9-208ENST00000489816 TIAM1Q13009 1591 aa22.79■■□□□ 1.24
BRD9-208ENST00000489816 FHAD1B1AJZ9 1412 aa22.73■■□□□ 1.23
BRD9-208ENST00000489816 KCNH8Q96L42 1107 aa22.73■■□□□ 1.23
BRD9-208ENST00000489816 PCF11O94913 1555 aaKnown RBP22.71■■□□□ 1.23
BRD9-208ENST00000489816 SETD5Q9C0A6 1442 aa22.71■■□□□ 1.23
BRD9-208ENST00000489816 DNMBPQ6XZF7 1577 aa22.7■■□□□ 1.23
BRD9-208ENST00000489816 ABCA10Q8WWZ4 1543 aa22.69■■□□□ 1.22
BRD9-208ENST00000489816 URB2Q14146 1524 aaKnown RBP22.68■■□□□ 1.22
BRD9-208ENST00000489816 DDX10Q13206 875 aaKnown RBP22.66■■□□□ 1.22
BRD9-208ENST00000489816 MTUS2Q5JR59 1369 aa22.64■■□□□ 1.21
BRD9-208ENST00000489816 CHIC2Q9UKJ5 165 aa22.62■■□□□ 1.21
BRD9-208ENST00000489816 MAPKBP1O60336 1514 aa22.61■■□□□ 1.21
BRD9-208ENST00000489816 PELP1Q8IZL8 1130 aaKnown RBP22.59■■□□□ 1.21
BRD9-208ENST00000489816 GAPVD1Q14C86 1478 aa22.57■■□□□ 1.2
BRD9-208ENST00000489816 RRP7BPQ9NSQ0 103 aa22.55■■□□□ 1.2
BRD9-208ENST00000489816 CASKIN1Q8WXD9 1431 aa22.54■■□□□ 1.2
BRD9-208ENST00000489816 MAP3K1Q13233 1512 aa22.53■■□□□ 1.2
BRD9-208ENST00000489816 PDS5BQ9NTI5 1447 aa22.51■■□□□ 1.19
BRD9-208ENST00000489816 AQRO60306 1485 aaKnown RBP eCLIP22.5■■□□□ 1.194e-7■■■■■ 37.4
BRD9-208ENST00000489816 WDR97A6NE52 1622 aa22.5■■□□□ 1.19
BRD9-208ENST00000489816 FYCO1Q9BQS8 1478 aa22.49■■□□□ 1.19
BRD9-208ENST00000489816 FMN1Q68DA7 1419 aa22.49■■□□□ 1.19
BRD9-208ENST00000489816 PTPRKQ15262 1439 aa22.47■■□□□ 1.19
BRD9-208ENST00000489816 FGD6Q6ZV73 1430 aa22.46■■□□□ 1.19
BRD9-208ENST00000489816 TRIM52Q96A61 297 aa22.44■■□□□ 1.18
BRD9-208ENST00000489816 LAMC3Q9Y6N6 1575 aa22.44■■□□□ 1.18
BRD9-208ENST00000489816 CFAP43Q8NDM7 1665 aa22.43■■□□□ 1.18
BRD9-208ENST00000489816 PPP1R15AO75807 674 aaPredicted RBP22.43■■□□□ 1.18
BRD9-208ENST00000489816 CUL7Q14999 1698 aa22.42■■□□□ 1.18
BRD9-208ENST00000489816 EFCAB5A4FU69 1503 aa22.42■■□□□ 1.18
BRD9-208ENST00000489816 SNAPC4Q5SXM2 1469 aa22.41■■□□□ 1.18
BRD9-208ENST00000489816 CTTNBP2Q8WZ74 1663 aa22.4■■□□□ 1.18
BRD9-208ENST00000489816 KIF21AQ7Z4S6 1674 aa22.39■■□□□ 1.17
BRD9-208ENST00000489816 FOXD1Q16676 465 aa22.38■■□□□ 1.17
BRD9-208ENST00000489816 TONSLQ96HA7 1378 aa22.38■■□□□ 1.17
BRD9-208ENST00000489816 NCOA2Q15596 1464 aa22.38■■□□□ 1.17
BRD9-208ENST00000489816 FBLN2P98095 1184 aa22.37■■□□□ 1.17
BRD9-208ENST00000489816 BCANQ96GW7 911 aa22.34■■□□□ 1.17
BRD9-208ENST00000489816 CCDC18Q5T9S5 1454 aa22.34■■□□□ 1.17
BRD9-208ENST00000489816 ABCA5Q8WWZ7 1642 aa22.32■■□□□ 1.16
BRD9-208ENST00000489816 SUPT16HQ9Y5B9 1047 aaKnown RBP22.32■■□□□ 1.16
BRD9-208ENST00000489816 MYOM3Q5VTT5 1437 aa22.3■■□□□ 1.16
BRD9-208ENST00000489816 LRRIQ1Q96JM4 1722 aa22.28■■□□□ 1.16
BRD9-208ENST00000489816 GRIN2BQ13224 1484 aa22.27■■□□□ 1.16
BRD9-208ENST00000489816 ZNF644Q9H582 1327 aaPredicted RBP22.27■■□□□ 1.15
BRD9-208ENST00000489816 MAGI3Q5TCQ9 1506 aa22.26■■□□□ 1.15
BRD9-208ENST00000489816 ZNF608Q9ULD9 1512 aaPredicted RBP22.26■■□□□ 1.15
BRD9-208ENST00000489816 NAIPQ13075 1403 aa22.26■■□□□ 1.15
BRD9-208ENST00000489816 CDK13Q14004 1512 aaKnown RBP22.26■■□□□ 1.15
BRD9-208ENST00000489816 HFM1A2PYH4 1435 aa22.23■■□□□ 1.15
BRD9-208ENST00000489816 SAMD9Q5K651 1589 aa22.22■■□□□ 1.15
BRD9-208ENST00000489816 ANP32CO43423 234 aa22.22■■□□□ 1.15
BRD9-208ENST00000489816 TARBP1Q13395 1621 aaKnown RBP22.21■■□□□ 1.15
BRD9-208ENST00000489816 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.21■■□□□ 1.152e-9■■□□□ 11.7
BRD9-208ENST00000489816 ZNF777Q9ULD5 760 aaPredicted RBP22.21■■□□□ 1.15
BRD9-208ENST00000489816 UACAQ9BZF9 1416 aa22.2■■□□□ 1.14
BRD9-208ENST00000489816 CNGB1Q14028 1251 aaPredicted RBP22.2■■□□□ 1.14
BRD9-208ENST00000489816 TIMELESSQ9UNS1 1208 aa22.19■■□□□ 1.14
BRD9-208ENST00000489816 PTPN23Q9H3S7 1636 aa22.17■■□□□ 1.14
BRD9-208ENST00000489816 MPHOSPH9Q99550 1183 aa22.14■■□□□ 1.14
BRD9-208ENST00000489816 EPRSP07814 1512 aaKnown RBP22.14■■□□□ 1.14
BRD9-208ENST00000489816 SUPT6HQ7KZ85 1726 aaKnown RBP22.14■■□□□ 1.13
BRD9-208ENST00000489816 FKBP8Q14318 412 aa22.13■■□□□ 1.13
BRD9-208ENST00000489816 CHMP7Q8WUX9 453 aaPredicted RBP22.13■■□□□ 1.13
BRD9-208ENST00000489816 IQGAP2Q13576 1575 aa22.12■■□□□ 1.13
BRD9-208ENST00000489816 EHBP1L1Q8N3D4 1523 aa22.11■■□□□ 1.13
BRD9-208ENST00000489816 MRC2Q9UBG0 1479 aa22.1■■□□□ 1.13
BRD9-208ENST00000489816 HSPA5P11021 654 aaKnown RBP22.1■■□□□ 1.13
BRD9-208ENST00000489816 L3MBTL2Q969R5 705 aa22.1■■□□□ 1.13
BRD9-208ENST00000489816 UGGT2Q9NYU1 1516 aa22.1■■□□□ 1.13
BRD9-208ENST00000489816 THOC2Q8NI27 1593 aaKnown RBP22.09■■□□□ 1.13
BRD9-208ENST00000489816 KDM6BO15054 1643 aa22.07■■□□□ 1.12
BRD9-208ENST00000489816 PBRM1Q86U86 1689 aa22.07■■□□□ 1.12
BRD9-208ENST00000489816 ZNF326Q5BKZ1 582 aaKnown RBP22.05■■□□□ 1.12
BRD9-208ENST00000489816 SLC4A1APQ9BWU0 796 aaKnown RBP22.05■■□□□ 1.12
BRD9-208ENST00000489816 POLR3GLQ9BT43 218 aa22.03■■□□□ 1.12
BRD9-208ENST00000489816 ADAMTS12P58397 1594 aa22.03■■□□□ 1.12
BRD9-208ENST00000489816 ERCC6Q03468 1493 aa22.02■■□□□ 1.12
BRD9-208ENST00000489816 CFDP1Q9UEE9 299 aaPredicted RBP22.01■■□□□ 1.11
BRD9-208ENST00000489816 WASHC2AQ641Q2 1341 aa22.01■■□□□ 1.11
BRD9-208ENST00000489816 HECW1Q76N89 1606 aa22■■□□□ 1.11
BRD9-208ENST00000489816 C11orf95C9JLR9 678 aaPredicted RBP21.99■■□□□ 1.11
BRD9-208ENST00000489816 DENND4BO75064 1496 aaPredicted RBP21.99■■□□□ 1.11
BRD9-208ENST00000489816 PRG4Q92954 1404 aaPredicted RBP21.99■■□□□ 1.11
BRD9-208ENST00000489816 HNRNPUQ00839 825 aaKnown RBP eCLIP21.98■■□□□ 1.11
BRD9-208ENST00000489816 CDK11AQ9UQ88 783 aaPredicted RBP21.98■■□□□ 1.11
BRD9-208ENST00000489816 EIF4G2P78344 907 aaKnown RBP eCLIP21.98■■□□□ 1.114e-8■■■■■ 75.7
BRD9-208ENST00000489816 IRX6P78412 446 aaPredicted RBP21.97■■□□□ 1.11
BRD9-208ENST00000489816 NBPF8Q3BBV2 869 aa21.97■■□□□ 1.11
BRD9-208ENST00000489816 ARHGEF11O15085 1522 aa21.96■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 95.2 ms