RNA–Protein interactions for RNA: ENST00000488765.1

MCF2L-229, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 2

Gene MCF2L, Length 3,205 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-229ENST00000488765 SIN3AQ96ST3 1273 aa22.53■■□□□ 1.2
MCF2L-229ENST00000488765 GOLGA3Q08378 1498 aa22.53■■□□□ 1.2
MCF2L-229ENST00000488765 P3H3Q8IVL6 736 aa22.52■■□□□ 1.2
MCF2L-229ENST00000488765 MYT1LQ9UL68 1186 aa22.52■■□□□ 1.19
MCF2L-229ENST00000488765 RAPGEF2Q9Y4G8 1499 aa22.5■■□□□ 1.19
MCF2L-229ENST00000488765 CLIP1P30622 1438 aa22.5■■□□□ 1.19
MCF2L-229ENST00000488765 SENP3-EIF4A1A0A087X0R7 540 aa22.47■■□□□ 1.19
MCF2L-229ENST00000488765 DNAJC5BQ9UF47 199 aa22.46■■□□□ 1.19
MCF2L-229ENST00000488765 EEA1Q15075 1411 aa22.45■■□□□ 1.18
MCF2L-229ENST00000488765 PEG3Q9GZU2 1588 aa22.43■■□□□ 1.18
MCF2L-229ENST00000488765 KANK4Q5T7N3 995 aaPredicted RBP22.42■■□□□ 1.18
MCF2L-229ENST00000488765 NPM2Q86SE8 214 aaKnown RBP22.4■■□□□ 1.18
MCF2L-229ENST00000488765 CEP164Q9UPV0 1460 aa22.39■■□□□ 1.18
MCF2L-229ENST00000488765 UBE2Q2Q8WVN8 375 aa22.39■■□□□ 1.17
MCF2L-229ENST00000488765 PPP1R15AO75807 674 aaPredicted RBP22.38■■□□□ 1.17
MCF2L-229ENST00000488765 CNGB1Q14028 1251 aaPredicted RBP22.38■■□□□ 1.17
MCF2L-229ENST00000488765 LAS1LQ9Y4W2 734 aaKnown RBP22.38■■□□□ 1.17
MCF2L-229ENST00000488765 NCAPD3P42695 1498 aa22.35■■□□□ 1.17
MCF2L-229ENST00000488765 ERICH6BQ5W0A0 696 aa22.35■■□□□ 1.17
MCF2L-229ENST00000488765 ZBTB47Q9UFB7 747 aaPredicted RBP22.33■■□□□ 1.16
MCF2L-229ENST00000488765 PPP4R2Q9NY27 417 aa22.32■■□□□ 1.16
MCF2L-229ENST00000488765 TIMELESSQ9UNS1 1208 aa22.3■■□□□ 1.16
MCF2L-229ENST00000488765 BRPF3Q9ULD4 1205 aa22.28■■□□□ 1.16
MCF2L-229ENST00000488765 ANP32AP39687 249 aaKnown RBP22.26■■□□□ 1.15
MCF2L-229ENST00000488765 FAM9BQ8IZU0 186 aa22.25■■□□□ 1.15
MCF2L-229ENST00000488765 CCER2I3L3R5 266 aa22.24■■□□□ 1.15
MCF2L-229ENST00000488765 NEFMP07197 916 aa22.22■■□□□ 1.15
MCF2L-229ENST00000488765 CUX1P39880 1505 aa22.21■■□□□ 1.15
MCF2L-229ENST00000488765 KIF27Q86VH2 1401 aa22.2■■□□□ 1.15
MCF2L-229ENST00000488765 VPS8Q8N3P4 1428 aa22.2■■□□□ 1.14
MCF2L-229ENST00000488765 CCDC184Q52MB2 194 aa22.2■■□□□ 1.14
MCF2L-229ENST00000488765 IPO9Q96P70 1041 aaKnown RBP22.2■■□□□ 1.14
MCF2L-229ENST00000488765 CUX2O14529 1486 aa22.2■■□□□ 1.14
MCF2L-229ENST00000488765 CADPSQ9ULU8 1353 aa22.19■■□□□ 1.14
MCF2L-229ENST00000488765 CFTRP13569 1480 aa22.15■■□□□ 1.14
MCF2L-229ENST00000488765 NESP48681 1621 aa22.14■■□□□ 1.14
MCF2L-229ENST00000488765 WDR97A6NE52 1622 aa22.14■■□□□ 1.14
MCF2L-229ENST00000488765 TOP2BQ02880 1626 aa22.13■■□□□ 1.13
MCF2L-229ENST00000488765 ARID3CA6NKF2 412 aa22.12■■□□□ 1.13
MCF2L-229ENST00000488765 RAB3GAP2Q9H2M9 1393 aa22.1■■□□□ 1.13
MCF2L-229ENST00000488765 CC2D2AQ9P2K1 1620 aa22.09■■□□□ 1.13
MCF2L-229ENST00000488765 FAM50AQ14320 339 aaKnown RBP22.08■■□□□ 1.13
MCF2L-229ENST00000488765 HMGXB3Q12766 1538 aa22.08■■□□□ 1.13
MCF2L-229ENST00000488765 KIF21BO75037 1637 aa22.06■■□□□ 1.12
MCF2L-229ENST00000488765 IGF1RP08069 1367 aa22.05■■□□□ 1.12
MCF2L-229ENST00000488765 PKNOX2Q96KN3 472 aa22.04■■□□□ 1.12
MCF2L-229ENST00000488765 CARMIL1Q5VZK9 1371 aa22.04■■□□□ 1.12
MCF2L-229ENST00000488765 RAD54L2Q9Y4B4 1467 aa22.04■■□□□ 1.12
MCF2L-229ENST00000488765 TDRD9Q8NDG6 1382 aaKnown RBP22■■□□□ 1.11
MCF2L-229ENST00000488765 FGD5Q6ZNL6 1462 aa21.99■■□□□ 1.11
MCF2L-229ENST00000488765 ARAP1Q96P48 1450 aa21.99■■□□□ 1.11
MCF2L-229ENST00000488765 PRXQ9BXM0 1461 aa21.99■■□□□ 1.11
MCF2L-229ENST00000488765 FANCD2Q9BXW9 1451 aa21.98■■□□□ 1.11
MCF2L-229ENST00000488765 SLC4A3P48751 1232 aa21.96■■□□□ 1.11
MCF2L-229ENST00000488765 CCNB3Q8WWL7 1395 aa21.94■■□□□ 1.1
MCF2L-229ENST00000488765 MRS2Q9HD23 443 aa21.93■■□□□ 1.1
MCF2L-229ENST00000488765 WASHC2AQ641Q2 1341 aa21.9■■□□□ 1.1
MCF2L-229ENST00000488765 MAPKBP1O60336 1514 aa21.9■■□□□ 1.1
MCF2L-229ENST00000488765 SKAP1Q86WV1 359 aa21.89■■□□□ 1.1
MCF2L-229ENST00000488765 AKNAQ7Z591 1439 aa21.87■■□□□ 1.09
MCF2L-229ENST00000488765 BIVM-ERCC5R4GMW8 1640 aa21.86■■□□□ 1.09
MCF2L-229ENST00000488765 VSIG10Q8N0Z9 540 aa21.84■■□□□ 1.09
MCF2L-229ENST00000488765 ARHGAP35Q9NRY4 1499 aa21.84■■□□□ 1.09
MCF2L-229ENST00000488765 FRAT1Q92837 279 aaPredicted RBP21.84■■□□□ 1.09
MCF2L-229ENST00000488765 PLEKHG5O94827 1062 aa21.82■■□□□ 1.08
MCF2L-229ENST00000488765 ARXQ96QS3 562 aa21.82■■□□□ 1.08
MCF2L-229ENST00000488765 GSE1Q14687 1217 aa21.81■■□□□ 1.08
MCF2L-229ENST00000488765 POLR3GLQ9BT43 218 aa21.81■■□□□ 1.08
MCF2L-229ENST00000488765 FHOD3Q2V2M9 1422 aa21.8■■□□□ 1.08
MCF2L-229ENST00000488765 FBLN2P98095 1184 aa21.8■■□□□ 1.08
MCF2L-229ENST00000488765 TONSLQ96HA7 1378 aa21.79■■□□□ 1.08
MCF2L-229ENST00000488765 WASHC2CQ9Y4E1 1318 aa21.75■■□□□ 1.07
MCF2L-229ENST00000488765 SETD5Q9C0A6 1442 aa21.74■■□□□ 1.07
MCF2L-229ENST00000488765 ZMYND15Q9H091 742 aa21.74■■□□□ 1.07
MCF2L-229ENST00000488765 RRBP1Q9P2E9 1410 aaKnown RBP21.73■■□□□ 1.07
MCF2L-229ENST00000488765 ERICH3Q5RHP9 1530 aa21.73■■□□□ 1.07
MCF2L-229ENST00000488765 HSPA5P11021 654 aaKnown RBP21.72■■□□□ 1.07
MCF2L-229ENST00000488765 POLA1P09884 1462 aaPredicted RBP21.72■■□□□ 1.07
MCF2L-229ENST00000488765 C11orf95C9JLR9 678 aaPredicted RBP21.72■■□□□ 1.07
MCF2L-229ENST00000488765 PDE4AP27815 886 aa21.72■■□□□ 1.07
MCF2L-229ENST00000488765 NFKBIBQ15653 356 aa21.71■■□□□ 1.07
MCF2L-229ENST00000488765 TOPBP1Q92547 1522 aa21.69■■□□□ 1.06
MCF2L-229ENST00000488765 DCAF11Q8TEB1 546 aa21.69■■□□□ 1.06
MCF2L-229ENST00000488765 CHIC2Q9UKJ5 165 aa21.67■■□□□ 1.06
MCF2L-229ENST00000488765 ARID4BQ4LE39 1312 aaPredicted RBP21.67■■□□□ 1.06
MCF2L-229ENST00000488765 PPM1GO15355 546 aaPredicted RBP21.67■■□□□ 1.06
MCF2L-229ENST00000488765 USP35Q9P2H5 1018 aa21.66■■□□□ 1.06
MCF2L-229ENST00000488765 PRKRIP1Q9H875 184 aaPredicted RBP21.66■■□□□ 1.06
MCF2L-229ENST00000488765 ZBED9Q6R2W3 1325 aa21.65■■□□□ 1.06
MCF2L-229ENST00000488765 EXOC6Q8TAG9 804 aa21.64■■□□□ 1.05
MCF2L-229ENST00000488765 DAXXQ9UER7 740 aaPredicted RBP21.62■■□□□ 1.05
MCF2L-229ENST00000488765 PHLDB1Q86UU1 1377 aa21.62■■□□□ 1.05
MCF2L-229ENST00000488765 RSPH6AQ9H0K4 717 aa21.61■■□□□ 1.05
MCF2L-229ENST00000488765 FRAT2O75474 233 aaPredicted RBP21.6■■□□□ 1.05
MCF2L-229ENST00000488765 URB2Q14146 1524 aaKnown RBP21.58■■□□□ 1.05
MCF2L-229ENST00000488765 AQRO60306 1485 aaKnown RBP eCLIP21.58■■□□□ 1.05
MCF2L-229ENST00000488765 PDS5BQ9NTI5 1447 aa21.57■■□□□ 1.04
MCF2L-229ENST00000488765 MTUS2Q5JR59 1369 aa21.56■■□□□ 1.04
MCF2L-229ENST00000488765 BACH2Q9BYV9 841 aa21.55■■□□□ 1.04
MCF2L-229ENST00000488765 NUDCQ9Y266 331 aa21.55■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms