RNA–Protein interactions for RNA: ENST00000478095.1

HDAC6-222, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-222ENST00000478095 CEP170Q5SW79 1584 aa17.25■□□□□ 0.35
HDAC6-222ENST00000478095 CUL7Q14999 1698 aa17.24■□□□□ 0.35
HDAC6-222ENST00000478095 ARHGEF11O15085 1522 aa17.22■□□□□ 0.35
HDAC6-222ENST00000478095 FAM9AQ8IZU1 332 aaPredicted RBP17.19■□□□□ 0.34
HDAC6-222ENST00000478095 RIMBP3CA6NJZ7 1639 aa17.18■□□□□ 0.34
HDAC6-222ENST00000478095 RIMBP3BA6NNM3 1639 aa17.18■□□□□ 0.34
HDAC6-222ENST00000478095 RIMBP3Q9UFD9 1639 aa17.18■□□□□ 0.34
HDAC6-222ENST00000478095 RAPGEF2Q9Y4G8 1499 aa17.17■□□□□ 0.34
HDAC6-222ENST00000478095 CSRNP3Q8WYN3 585 aa17.15■□□□□ 0.34
HDAC6-222ENST00000478095 SCAF1Q9H7N4 1312 aaKnown RBP17.15■□□□□ 0.34
HDAC6-222ENST00000478095 EEA1Q15075 1411 aa17.13■□□□□ 0.33
HDAC6-222ENST00000478095 PRXQ9BXM0 1461 aa17.12■□□□□ 0.33
HDAC6-222ENST00000478095 JPH4Q96JJ6 628 aa17.11■□□□□ 0.33
HDAC6-222ENST00000478095 ARAP1Q96P48 1450 aa17.11■□□□□ 0.33
HDAC6-222ENST00000478095 KIAA0586Q9BVV6 1533 aa17.11■□□□□ 0.33
HDAC6-222ENST00000478095 CYB5RLQ6IPT4 315 aa17.1■□□□□ 0.33
HDAC6-222ENST00000478095 ERCC6L2Q5T890 1561 aa17.09■□□□□ 0.33
HDAC6-222ENST00000478095 PRG4Q92954 1404 aaPredicted RBP17.08■□□□□ 0.32
HDAC6-222ENST00000478095 SHROOM2Q13796 1616 aa17.07■□□□□ 0.32
HDAC6-222ENST00000478095 PPP4R3CPQ6ZMV5 832 aa17.02■□□□□ 0.32
HDAC6-222ENST00000478095 POTEDQ86YR6 584 aa17.02■□□□□ 0.32
HDAC6-222ENST00000478095 EHMT2Q96KQ7 1210 aa17.02■□□□□ 0.32
HDAC6-222ENST00000478095 IQGAP2Q13576 1575 aa17.01■□□□□ 0.31
HDAC6-222ENST00000478095 MAPK8IP2Q13387 824 aaPredicted RBP16.96■□□□□ 0.31
HDAC6-222ENST00000478095 TTBK1Q5TCY1 1321 aaPredicted RBP16.95■□□□□ 0.3
HDAC6-222ENST00000478095 KIF21BO75037 1637 aa16.93■□□□□ 0.3
HDAC6-222ENST00000478095 CARMIL2Q6F5E8 1435 aa16.93■□□□□ 0.3
HDAC6-222ENST00000478095 UGGT2Q9NYU1 1516 aa16.92■□□□□ 0.3
HDAC6-222ENST00000478095 DISP1Q96F81 1524 aa16.91■□□□□ 0.3
HDAC6-222ENST00000478095 RANGAP1P46060 587 aaPredicted RBP16.9■□□□□ 0.3
HDAC6-222ENST00000478095 CTTNBP2Q8WZ74 1663 aa16.9■□□□□ 0.3
HDAC6-222ENST00000478095 GOLGA3Q08378 1498 aa16.89■□□□□ 0.29
HDAC6-222ENST00000478095 TNIKQ9UKE5 1360 aa16.89■□□□□ 0.29
HDAC6-222ENST00000478095 UBTFP17480 764 aaKnown RBP16.88■□□□□ 0.29
HDAC6-222ENST00000478095 PTPRGP23470 1445 aa16.87■□□□□ 0.29
HDAC6-222ENST00000478095 KIAA0556O60303 1618 aa16.86■□□□□ 0.29
HDAC6-222ENST00000478095 P3H3Q8IVL6 736 aa16.84■□□□□ 0.29
HDAC6-222ENST00000478095 DMRT2Q9Y5R5 561 aa16.78■□□□□ 0.28
HDAC6-222ENST00000478095 ADCY10Q96PN6 1610 aa16.77■□□□□ 0.27
HDAC6-222ENST00000478095 UACAQ9BZF9 1416 aa16.76■□□□□ 0.27
HDAC6-222ENST00000478095 TRHP20396 242 aaPredicted RBP16.75■□□□□ 0.27
HDAC6-222ENST00000478095 SAMD9Q5K651 1589 aa16.75■□□□□ 0.27
HDAC6-222ENST00000478095 FHOD3Q2V2M9 1422 aa16.74■□□□□ 0.27
HDAC6-222ENST00000478095 NPM1P06748 294 aaKnown RBP eCLIP16.74■□□□□ 0.27
HDAC6-222ENST00000478095 PLB1Q6P1J6 1458 aa16.73■□□□□ 0.27
HDAC6-222ENST00000478095 ABCC2Q92887 1545 aa16.7■□□□□ 0.26
HDAC6-222ENST00000478095 UHRF1BP1LA0JNW5 1464 aa16.7■□□□□ 0.26
HDAC6-222ENST00000478095 EFCAB5A4FU69 1503 aa16.69■□□□□ 0.26
HDAC6-222ENST00000478095 LOC105371045A0A1W2PR82 267 aa16.67■□□□□ 0.26
HDAC6-222ENST00000478095 ARID3CA6NKF2 412 aa16.67■□□□□ 0.26
HDAC6-222ENST00000478095 ARHGAP35Q9NRY4 1499 aa16.67■□□□□ 0.26
HDAC6-222ENST00000478095 ABCA8O94911 1581 aa16.66■□□□□ 0.26
HDAC6-222ENST00000478095 MAPKBP1O60336 1514 aa16.63■□□□□ 0.25
HDAC6-222ENST00000478095 KDM5BQ9UGL1 1544 aa16.63■□□□□ 0.25
HDAC6-222ENST00000478095 CNKSR2Q8WXI2 1034 aa16.62■□□□□ 0.25
HDAC6-222ENST00000478095 CLIP1P30622 1438 aa16.61■□□□□ 0.25
HDAC6-222ENST00000478095 ASXL2Q76L83 1435 aa16.61■□□□□ 0.25
HDAC6-222ENST00000478095 FAM69CQ0P6D2 419 aa16.58■□□□□ 0.24
HDAC6-222ENST00000478095 NCBP3Q53F19 620 aaKnown RBP16.58■□□□□ 0.24
HDAC6-222ENST00000478095 ZCCHC11Q5TAX3 1644 aaKnown RBP16.58■□□□□ 0.24
HDAC6-222ENST00000478095 RAPGEF6Q8TEU7 1601 aa16.58■□□□□ 0.24
HDAC6-222ENST00000478095 ABCC10Q5T3U5 1492 aa16.57■□□□□ 0.24
HDAC6-222ENST00000478095 NUP153P49790 1475 aaKnown RBP16.56■□□□□ 0.24
HDAC6-222ENST00000478095 CEP162Q5TB80 1403 aa16.56■□□□□ 0.24
HDAC6-222ENST00000478095 FMN1Q68DA7 1419 aa16.56■□□□□ 0.24
HDAC6-222ENST00000478095 ATP10BO94823 1461 aa16.55■□□□□ 0.24
HDAC6-222ENST00000478095 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.55■□□□□ 0.24
HDAC6-222ENST00000478095 HNRNPUL2Q1KMD3 747 aaKnown RBP16.55■□□□□ 0.24
HDAC6-222ENST00000478095 ATP1B4Q9UN42 357 aaPredicted RBP16.55■□□□□ 0.24
HDAC6-222ENST00000478095 DIP2BQ9P265 1576 aa16.53■□□□□ 0.24
HDAC6-222ENST00000478095 WDR7Q9Y4E6 1490 aa16.52■□□□□ 0.23
HDAC6-222ENST00000478095 KCNH8Q96L42 1107 aa16.5■□□□□ 0.23
HDAC6-222ENST00000478095 EPRSP07814 1512 aaKnown RBP16.5■□□□□ 0.23
HDAC6-222ENST00000478095 CDK13Q14004 1512 aaKnown RBP16.48■□□□□ 0.23
HDAC6-222ENST00000478095 KIF13AQ9H1H9 1805 aa16.46■□□□□ 0.23
HDAC6-222ENST00000478095 PCF11O94913 1555 aaKnown RBP16.46■□□□□ 0.23
HDAC6-222ENST00000478095 HECW1Q76N89 1606 aa16.45■□□□□ 0.22
HDAC6-222ENST00000478095 CASKIN1Q8WXD9 1431 aa16.45■□□□□ 0.22
HDAC6-222ENST00000478095 PLEKHD1A6NEE1 506 aa16.43■□□□□ 0.22
HDAC6-222ENST00000478095 GLI2P10070 1586 aa16.43■□□□□ 0.22
HDAC6-222ENST00000478095 FYCO1Q9BQS8 1478 aa16.41■□□□□ 0.22
HDAC6-222ENST00000478095 CD109Q6YHK3 1445 aa16.37■□□□□ 0.21
HDAC6-222ENST00000478095 CDK11AQ9UQ88 783 aaPredicted RBP16.36■□□□□ 0.21
HDAC6-222ENST00000478095 CCDC18Q5T9S5 1454 aa16.35■□□□□ 0.21
HDAC6-222ENST00000478095 MAP3K4Q9Y6R4 1608 aa16.35■□□□□ 0.21
HDAC6-222ENST00000478095 RNF216Q9NWF9 866 aaPredicted RBP16.34■□□□□ 0.21
HDAC6-222ENST00000478095 VPS8Q8N3P4 1428 aa16.34■□□□□ 0.21
HDAC6-222ENST00000478095 TSPOAP1O95153 1857 aa16.33■□□□□ 0.21
HDAC6-222ENST00000478095 TROQ12816 1431 aaPredicted RBP16.32■□□□□ 0.2
HDAC6-222ENST00000478095 LRRIQ1Q96JM4 1722 aa16.32■□□□□ 0.2
HDAC6-222ENST00000478095 PPRC1Q5VV67 1664 aaKnown RBP16.31■□□□□ 0.2
HDAC6-222ENST00000478095 HOXD11P31277 338 aaPredicted RBP16.31■□□□□ 0.2
HDAC6-222ENST00000478095 ABCA9Q8IUA7 1624 aa16.3■□□□□ 0.2
HDAC6-222ENST00000478095 TEX14Q8IWB6 1497 aa16.3■□□□□ 0.2
HDAC6-222ENST00000478095 MAGI3Q5TCQ9 1506 aa16.29■□□□□ 0.2
HDAC6-222ENST00000478095 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.29■□□□□ 0.2
HDAC6-222ENST00000478095 KCNA4P22459 653 aa16.29■□□□□ 0.2
HDAC6-222ENST00000478095 CFAP43Q8NDM7 1665 aa16.29■□□□□ 0.2
HDAC6-222ENST00000478095 TTC37Q6PGP7 1564 aa16.27■□□□□ 0.2
HDAC6-222ENST00000478095 KIF14Q15058 1648 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms