RNA–Protein interactions for RNA: ENST00000469739.6

TOP3A-203, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 2

Gene TOP3A, Length 3,196 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-203ENST00000469739 CARMIL1Q5VZK9 1371 aa14.05□□□□□ -0.16
TOP3A-203ENST00000469739 PDS5BQ9NTI5 1447 aa14.04□□□□□ -0.16
TOP3A-203ENST00000469739 AEBP2Q6ZN18 517 aaPredicted RBP14□□□□□ -0.17
TOP3A-203ENST00000469739 TDRD9Q8NDG6 1382 aaKnown RBP14□□□□□ -0.17
TOP3A-203ENST00000469739 CUL7Q14999 1698 aa13.99□□□□□ -0.17
TOP3A-203ENST00000469739 ARHGAP35Q9NRY4 1499 aa13.99□□□□□ -0.17
TOP3A-203ENST00000469739 YTHDC1Q96MU7 727 aaKnown RBP13.99□□□□□ -0.17
TOP3A-203ENST00000469739 ARID3CA6NKF2 412 aa13.98□□□□□ -0.17
TOP3A-203ENST00000469739 FAM50AQ14320 339 aaKnown RBP13.98□□□□□ -0.17
TOP3A-203ENST00000469739 ABCA5Q8WWZ7 1642 aa13.98□□□□□ -0.17
TOP3A-203ENST00000469739 ACIN1Q9UKV3 1341 aaKnown RBP13.93□□□□□ -0.18
TOP3A-203ENST00000469739 CTTNBP2Q8WZ74 1663 aa13.93□□□□□ -0.18
TOP3A-203ENST00000469739 ZNF316A6NFI3 1004 aaPredicted RBP13.93□□□□□ -0.18
TOP3A-203ENST00000469739 TARBP1Q13395 1621 aaKnown RBP13.93□□□□□ -0.18
TOP3A-203ENST00000469739 DAXXQ9UER7 740 aaPredicted RBP13.92□□□□□ -0.18
TOP3A-203ENST00000469739 FHOD3Q2V2M9 1422 aa13.9□□□□□ -0.18
TOP3A-203ENST00000469739 MRC2Q9UBG0 1479 aa13.89□□□□□ -0.19
TOP3A-203ENST00000469739 GAPVD1Q14C86 1478 aa13.89□□□□□ -0.19
TOP3A-203ENST00000469739 PBRM1Q86U86 1689 aa13.87□□□□□ -0.19
TOP3A-203ENST00000469739 NEUROD1Q13562 356 aa13.86□□□□□ -0.19
TOP3A-203ENST00000469739 CCNB3Q8WWL7 1395 aa13.84□□□□□ -0.19
TOP3A-203ENST00000469739 KCNA4P22459 653 aa13.83□□□□□ -0.2
TOP3A-203ENST00000469739 GTF3C3Q9Y5Q9 886 aa13.83□□□□□ -0.2
TOP3A-203ENST00000469739 EFCAB5A4FU69 1503 aa13.83□□□□□ -0.2
TOP3A-203ENST00000469739 MIER1Q8N108 512 aa13.83□□□□□ -0.2
TOP3A-203ENST00000469739 WDR62O43379 1518 aa13.82□□□□□ -0.2
TOP3A-203ENST00000469739 PCF11O94913 1555 aaKnown RBP13.82□□□□□ -0.2
TOP3A-203ENST00000469739 TIAM1Q13009 1591 aa13.81□□□□□ -0.2
TOP3A-203ENST00000469739 DHX57Q6P158 1386 aaKnown RBP13.8□□□□□ -0.2
TOP3A-203ENST00000469739 CFAP43Q8NDM7 1665 aa13.8□□□□□ -0.2
TOP3A-203ENST00000469739 PHLDB1Q86UU1 1377 aa13.8□□□□□ -0.2
TOP3A-203ENST00000469739 MAP3K1Q13233 1512 aa13.79□□□□□ -0.2
TOP3A-203ENST00000469739 ADAMTS12P58397 1594 aa13.78□□□□□ -0.2
TOP3A-203ENST00000469739 FHAD1B1AJZ9 1412 aa13.78□□□□□ -0.2
TOP3A-203ENST00000469739 SIN3AQ96ST3 1273 aa13.77□□□□□ -0.21
TOP3A-203ENST00000469739 SAMD9Q5K651 1589 aa13.77□□□□□ -0.21
TOP3A-203ENST00000469739 FBLN2P98095 1184 aa13.77□□□□□ -0.21
TOP3A-203ENST00000469739 AQRO60306 1485 aaKnown RBP eCLIP13.76□□□□□ -0.211e-6■■■■□ 26.1
TOP3A-203ENST00000469739 THOC2Q8NI27 1593 aaKnown RBP13.75□□□□□ -0.21
TOP3A-203ENST00000469739 IFT140Q96RY7 1462 aa13.75□□□□□ -0.21
TOP3A-203ENST00000469739 RAB3GAP2Q9H2M9 1393 aa13.74□□□□□ -0.21
TOP3A-203ENST00000469739 RRBP1Q9P2E9 1410 aaKnown RBP13.74□□□□□ -0.21
TOP3A-203ENST00000469739 CENPBP07199 599 aaPredicted RBP13.74□□□□□ -0.21
TOP3A-203ENST00000469739 HIRIP3Q9BW71 556 aaPredicted RBP13.74□□□□□ -0.21
TOP3A-203ENST00000469739 FYCO1Q9BQS8 1478 aa13.73□□□□□ -0.21
TOP3A-203ENST00000469739 ERCC6Q03468 1493 aa13.73□□□□□ -0.21
TOP3A-203ENST00000469739 ZNF608Q9ULD9 1512 aaPredicted RBP13.73□□□□□ -0.21
TOP3A-203ENST00000469739 LRRC9Q6ZRR7 1453 aa13.72□□□□□ -0.21
TOP3A-203ENST00000469739 CHIC2Q9UKJ5 165 aa13.72□□□□□ -0.21
TOP3A-203ENST00000469739 GRIN2BQ13224 1484 aa13.71□□□□□ -0.21
TOP3A-203ENST00000469739 EIF4G3O43432 1585 aaKnown RBP13.71□□□□□ -0.22
TOP3A-203ENST00000469739 MTUS2Q5JR59 1369 aa13.7□□□□□ -0.22
TOP3A-203ENST00000469739 CASKIN1Q8WXD9 1431 aa13.7□□□□□ -0.22
TOP3A-203ENST00000469739 SNAPC4Q5SXM2 1469 aa13.69□□□□□ -0.22
TOP3A-203ENST00000469739 LRRIQ1Q96JM4 1722 aa13.69□□□□□ -0.22
TOP3A-203ENST00000469739 FMN1Q68DA7 1419 aa13.68□□□□□ -0.22
TOP3A-203ENST00000469739 IQGAP2Q13576 1575 aa13.67□□□□□ -0.22
TOP3A-203ENST00000469739 NCBP3Q53F19 620 aaKnown RBP13.66□□□□□ -0.22
TOP3A-203ENST00000469739 RRP7BPQ9NSQ0 103 aa13.65□□□□□ -0.23
TOP3A-203ENST00000469739 TIMELESSQ9UNS1 1208 aa13.63□□□□□ -0.23
TOP3A-203ENST00000469739 SETD5Q9C0A6 1442 aa13.62□□□□□ -0.23
TOP3A-203ENST00000469739 GRIN2AQ12879 1464 aa13.58□□□□□ -0.24
TOP3A-203ENST00000469739 TRIM52Q96A61 297 aa13.58□□□□□ -0.24
TOP3A-203ENST00000469739 UGGT2Q9NYU1 1516 aa13.58□□□□□ -0.24
TOP3A-203ENST00000469739 MAGI1Q96QZ7 1491 aaPredicted RBP13.57□□□□□ -0.24
TOP3A-203ENST00000469739 CHMP7Q8WUX9 453 aaPredicted RBP13.57□□□□□ -0.24
TOP3A-203ENST00000469739 HECW1Q76N89 1606 aa13.56□□□□□ -0.24
TOP3A-203ENST00000469739 DDX10Q13206 875 aaKnown RBP13.56□□□□□ -0.24
TOP3A-203ENST00000469739 CLSPNQ9HAW4 1339 aa13.56□□□□□ -0.24
TOP3A-203ENST00000469739 KCNH8Q96L42 1107 aa13.55□□□□□ -0.24
TOP3A-203ENST00000469739 KIAA0556O60303 1618 aa13.55□□□□□ -0.24
TOP3A-203ENST00000469739 KIAA0586Q9BVV6 1533 aa13.54□□□□□ -0.24
TOP3A-203ENST00000469739 FOXD1Q16676 465 aa13.54□□□□□ -0.24
TOP3A-203ENST00000469739 EHBP1L1Q8N3D4 1523 aa13.53□□□□□ -0.24
TOP3A-203ENST00000469739 ZNF777Q9ULD5 760 aaPredicted RBP13.53□□□□□ -0.24
TOP3A-203ENST00000469739 PTPRKQ15262 1439 aa13.53□□□□□ -0.24
TOP3A-203ENST00000469739 CEP170Q5SW79 1584 aa13.53□□□□□ -0.24
TOP3A-203ENST00000469739 SUPT6HQ7KZ85 1726 aaKnown RBP13.53□□□□□ -0.24
TOP3A-203ENST00000469739 FGD6Q6ZV73 1430 aa13.53□□□□□ -0.24
TOP3A-203ENST00000469739 SYNJ2O15056 1496 aa13.52□□□□□ -0.24
TOP3A-203ENST00000469739 CCDC18Q5T9S5 1454 aa13.52□□□□□ -0.24
TOP3A-203ENST00000469739 PHF23Q9BUL5 403 aaPredicted RBP13.52□□□□□ -0.24
TOP3A-203ENST00000469739 MAGI3Q5TCQ9 1506 aa13.52□□□□□ -0.25
TOP3A-203ENST00000469739 MAPKBP1O60336 1514 aa13.51□□□□□ -0.25
TOP3A-203ENST00000469739 DISP1Q96F81 1524 aa13.51□□□□□ -0.25
TOP3A-203ENST00000469739 ZNF644Q9H582 1327 aaPredicted RBP13.51□□□□□ -0.25
TOP3A-203ENST00000469739 NCOA2Q15596 1464 aa13.51□□□□□ -0.25
TOP3A-203ENST00000469739 CDK13Q14004 1512 aaKnown RBP13.5□□□□□ -0.25
TOP3A-203ENST00000469739 EPRSP07814 1512 aaKnown RBP13.48□□□□□ -0.25
TOP3A-203ENST00000469739 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.47□□□□□ -0.25
TOP3A-203ENST00000469739 ARHGEF11O15085 1522 aa13.47□□□□□ -0.25
TOP3A-203ENST00000469739 DNAJC5Q9H3Z4 198 aa13.46□□□□□ -0.25
TOP3A-203ENST00000469739 TULP1O00294 542 aaPredicted RBP13.45□□□□□ -0.26
TOP3A-203ENST00000469739 MYOM3Q5VTT5 1437 aa13.45□□□□□ -0.26
TOP3A-203ENST00000469739 RAPGEF6Q8TEU7 1601 aa13.45□□□□□ -0.26
TOP3A-203ENST00000469739 NUP160Q12769 1436 aa13.45□□□□□ -0.26
TOP3A-203ENST00000469739 BCL11AQ9H165 835 aa13.44□□□□□ -0.26
TOP3A-203ENST00000469739 TONSLQ96HA7 1378 aa13.44□□□□□ -0.26
TOP3A-203ENST00000469739 CNGB1Q14028 1251 aaPredicted RBP13.44□□□□□ -0.26
TOP3A-203ENST00000469739 PTPN23Q9H3S7 1636 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms