RNA–Protein interactions for RNA: ENST00000469080.5

USP11-206, Transcript of ubiquitin specific peptidase 11, humanhuman

TSL 1 (best)

Gene USP11, Length 3,467 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-206ENST00000469080 TRIM52Q96A61 297 aa17.69■□□□□ 0.42
USP11-206ENST00000469080 SIN3AQ96ST3 1273 aa17.68■□□□□ 0.42
USP11-206ENST00000469080 IGF1RP08069 1367 aa17.66■□□□□ 0.42
USP11-206ENST00000469080 ZNF777Q9ULD5 760 aaPredicted RBP17.65■□□□□ 0.42
USP11-206ENST00000469080 FGD5Q6ZNL6 1462 aa17.65■□□□□ 0.42
USP11-206ENST00000469080 POLR3GLQ9BT43 218 aa17.63■□□□□ 0.41
USP11-206ENST00000469080 FHOD3Q2V2M9 1422 aa17.62■□□□□ 0.41
USP11-206ENST00000469080 RRP7BPQ9NSQ0 103 aa17.61■□□□□ 0.41
USP11-206ENST00000469080 PDS5BQ9NTI5 1447 aa17.6■□□□□ 0.41
USP11-206ENST00000469080 ARAP1Q96P48 1450 aa17.59■□□□□ 0.41
USP11-206ENST00000469080 KIF21BO75037 1637 aa17.59■□□□□ 0.41
USP11-206ENST00000469080 CCDC136Q96JN2 1154 aa17.57■□□□□ 0.4
USP11-206ENST00000469080 TOP2BQ02880 1626 aa17.56■□□□□ 0.4
USP11-206ENST00000469080 SLC24A1O60721 1099 aa17.56■□□□□ 0.4
USP11-206ENST00000469080 SUPT16HQ9Y5B9 1047 aaKnown RBP17.55■□□□□ 0.4
USP11-206ENST00000469080 MTUS2Q5JR59 1369 aa17.55■□□□□ 0.4
USP11-206ENST00000469080 ERCC6Q03468 1493 aa17.54■□□□□ 0.4
USP11-206ENST00000469080 ZNF326Q5BKZ1 582 aaKnown RBP17.53■□□□□ 0.4
USP11-206ENST00000469080 DDX10Q13206 875 aaKnown RBP17.51■□□□□ 0.39
USP11-206ENST00000469080 CHMP7Q8WUX9 453 aaPredicted RBP17.51■□□□□ 0.39
USP11-206ENST00000469080 CCNB3Q8WWL7 1395 aa17.5■□□□□ 0.39
USP11-206ENST00000469080 URB2Q14146 1524 aaKnown RBP17.5■□□□□ 0.39
USP11-206ENST00000469080 TOPBP1Q92547 1522 aa17.5■□□□□ 0.39
USP11-206ENST00000469080 EIF5BO60841 1220 aaKnown RBP17.49■□□□□ 0.39
USP11-206ENST00000469080 LAMC3Q9Y6N6 1575 aa17.49■□□□□ 0.39
USP11-206ENST00000469080 PRXQ9BXM0 1461 aa17.48■□□□□ 0.39
USP11-206ENST00000469080 SALL2Q9Y467 1007 aaPredicted RBP17.47■□□□□ 0.39
USP11-206ENST00000469080 FOXD1Q16676 465 aa17.46■□□□□ 0.39
USP11-206ENST00000469080 POLA1P09884 1462 aaPredicted RBP17.46■□□□□ 0.39
USP11-206ENST00000469080 ARHGAP35Q9NRY4 1499 aa17.45■□□□□ 0.38
USP11-206ENST00000469080 AQRO60306 1485 aaKnown RBP eCLIP17.44■□□□□ 0.38
USP11-206ENST00000469080 KIF21AQ7Z4S6 1674 aa17.43■□□□□ 0.38
USP11-206ENST00000469080 SENP3-EIF4A1A0A087X0R7 540 aa17.42■□□□□ 0.38
USP11-206ENST00000469080 BIVM-ERCC5R4GMW8 1640 aa17.42■□□□□ 0.38
USP11-206ENST00000469080 BCANQ96GW7 911 aa17.41■□□□□ 0.38
USP11-206ENST00000469080 MYT1LQ9UL68 1186 aa17.4■□□□□ 0.38
USP11-206ENST00000469080 RAB3GAP2Q9H2M9 1393 aa17.4■□□□□ 0.38
USP11-206ENST00000469080 PHLDB1Q86UU1 1377 aa17.37■□□□□ 0.37
USP11-206ENST00000469080 DNMBPQ6XZF7 1577 aa17.36■□□□□ 0.37
USP11-206ENST00000469080 UBE2Q2Q8WVN8 375 aa17.36■□□□□ 0.37
USP11-206ENST00000469080 DHX57Q6P158 1386 aaKnown RBP17.35■□□□□ 0.37
USP11-206ENST00000469080 KCNH8Q96L42 1107 aa17.34■□□□□ 0.37
USP11-206ENST00000469080 PRDM2Q13029 1718 aa17.34■□□□□ 0.37
USP11-206ENST00000469080 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.33■□□□□ 0.36
USP11-206ENST00000469080 MRC2Q9UBG0 1479 aa17.31■□□□□ 0.36
USP11-206ENST00000469080 DEKP35659 375 aaKnown RBP17.3■□□□□ 0.36
USP11-206ENST00000469080 GAPVD1Q14C86 1478 aa17.28■□□□□ 0.36
USP11-206ENST00000469080 RBM19Q9Y4C8 960 aaKnown RBP17.28■□□□□ 0.36
USP11-206ENST00000469080 ZNF608Q9ULD9 1512 aaPredicted RBP17.27■□□□□ 0.36
USP11-206ENST00000469080 TONSLQ96HA7 1378 aa17.26■□□□□ 0.35
USP11-206ENST00000469080 FHAD1B1AJZ9 1412 aa17.26■□□□□ 0.35
USP11-206ENST00000469080 ZNF644Q9H582 1327 aaPredicted RBP17.25■□□□□ 0.35
USP11-206ENST00000469080 PLEKHG5O94827 1062 aa17.25■□□□□ 0.35
USP11-206ENST00000469080 SENP3Q9H4L4 574 aaPredicted RBP17.24■□□□□ 0.35
USP11-206ENST00000469080 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.23■□□□□ 0.358e-7■■□□□ 14.2
USP11-206ENST00000469080 CLSPNQ9HAW4 1339 aa17.23■□□□□ 0.35
USP11-206ENST00000469080 ERICH3Q5RHP9 1530 aa17.22■□□□□ 0.35
USP11-206ENST00000469080 ABCA10Q8WWZ4 1543 aa17.22■□□□□ 0.35
USP11-206ENST00000469080 SETD5Q9C0A6 1442 aa17.21■□□□□ 0.35
USP11-206ENST00000469080 KDM2AQ9Y2K7 1162 aa17.21■□□□□ 0.35
USP11-206ENST00000469080 RTN4Q9NQC3 1192 aaKnown RBP17.19■□□□□ 0.34
USP11-206ENST00000469080 SLC4A1APQ9BWU0 796 aaKnown RBP17.17■□□□□ 0.34
USP11-206ENST00000469080 CFDP1Q9UEE9 299 aaPredicted RBP17.17■□□□□ 0.34
USP11-206ENST00000469080 CDK11AQ9UQ88 783 aaPredicted RBP17.17■□□□□ 0.34
USP11-206ENST00000469080 LRRC9Q6ZRR7 1453 aa17.16■□□□□ 0.34
USP11-206ENST00000469080 MSH5O43196 834 aa17.16■□□□□ 0.34
USP11-206ENST00000469080 PKNOX2Q96KN3 472 aa17.15■□□□□ 0.34
USP11-206ENST00000469080 ANP32CO43423 234 aa17.12■□□□□ 0.33
USP11-206ENST00000469080 JPH4Q96JJ6 628 aa17.11■□□□□ 0.33
USP11-206ENST00000469080 FMN1Q68DA7 1419 aa17.11■□□□□ 0.33
USP11-206ENST00000469080 RGL3Q3MIN7 710 aa17.1■□□□□ 0.33
USP11-206ENST00000469080 PLEKHD1A6NEE1 506 aa17.09■□□□□ 0.33
USP11-206ENST00000469080 IRX6P78412 446 aaPredicted RBP17.08■□□□□ 0.32
USP11-206ENST00000469080 TARBP1Q13395 1621 aaKnown RBP17.07■□□□□ 0.32
USP11-206ENST00000469080 PCF11O94913 1555 aaKnown RBP17.07■□□□□ 0.32
USP11-206ENST00000469080 IFT140Q96RY7 1462 aa17.07■□□□□ 0.32
USP11-206ENST00000469080 WDR62O43379 1518 aa17.06■□□□□ 0.32
USP11-206ENST00000469080 RRBP1Q9P2E9 1410 aaKnown RBP17.05■□□□□ 0.32
USP11-206ENST00000469080 PODXL2Q9NZ53 605 aa17.05■□□□□ 0.32
USP11-206ENST00000469080 FKBP8Q14318 412 aa17.05■□□□□ 0.32
USP11-206ENST00000469080 ERICH6BQ5W0A0 696 aa17.04■□□□□ 0.32
USP11-206ENST00000469080 FAM9BQ8IZU0 186 aa17.04■□□□□ 0.32
USP11-206ENST00000469080 HNRNPMP52272 730 aaKnown RBP eCLIP17.04■□□□□ 0.32
USP11-206ENST00000469080 TIAM1Q13009 1591 aa17.03■□□□□ 0.32
USP11-206ENST00000469080 PPP1R15AO75807 674 aaPredicted RBP17.02■□□□□ 0.32
USP11-206ENST00000469080 DAXXQ9UER7 740 aaPredicted RBP17.02■□□□□ 0.32
USP11-206ENST00000469080 SNAPC4Q5SXM2 1469 aa17.02■□□□□ 0.31
USP11-206ENST00000469080 GRIN2BQ13224 1484 aa17.02■□□□□ 0.31
USP11-206ENST00000469080 THOC2Q8NI27 1593 aaKnown RBP17.01■□□□□ 0.31
USP11-206ENST00000469080 NBR1Q14596 966 aa17.01■□□□□ 0.31
USP11-206ENST00000469080 MPHOSPH9Q99550 1183 aa17.01■□□□□ 0.31
USP11-206ENST00000469080 CDK13Q14004 1512 aaKnown RBP17.01■□□□□ 0.31
USP11-206ENST00000469080 TSPY4P0CV99 314 aa17.01■□□□□ 0.31
USP11-206ENST00000469080 TSPY10P0CW01 314 aa17.01■□□□□ 0.31
USP11-206ENST00000469080 FGD6Q6ZV73 1430 aa17■□□□□ 0.31
USP11-206ENST00000469080 HNRNPUQ00839 825 aaKnown RBP eCLIP16.98■□□□□ 0.31
USP11-206ENST00000469080 NEFLP07196 543 aa16.98■□□□□ 0.31
USP11-206ENST00000469080 L3MBTL2Q969R5 705 aa16.98■□□□□ 0.31
USP11-206ENST00000469080 CASKIN1Q8WXD9 1431 aa16.98■□□□□ 0.31
USP11-206ENST00000469080 ABCA5Q8WWZ7 1642 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms