RNA–Protein interactions for RNA: ENST00000466781.5

HPS4-209, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 6,136 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-209ENST00000466781 ZBTB7CA1YPR0 619 aa11.69□□□□□ -0.54
HPS4-209ENST00000466781 GOLGA3Q08378 1498 aa11.69□□□□□ -0.54
HPS4-209ENST00000466781 MYO15BQ96JP2 1530 aa11.69□□□□□ -0.54
HPS4-209ENST00000466781 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.67□□□□□ -0.54
HPS4-209ENST00000466781 CLIP1P30622 1438 aa11.66□□□□□ -0.54
HPS4-209ENST00000466781 WDR43Q15061 677 aaKnown RBP eCLIP11.66□□□□□ -0.54
HPS4-209ENST00000466781 MROH2BQ7Z745 1585 aa11.65□□□□□ -0.54
HPS4-209ENST00000466781 C14orf37Q86TY3 774 aa11.64□□□□□ -0.55
HPS4-209ENST00000466781 MYH16Q9H6N6 1097 aa11.64□□□□□ -0.55
HPS4-209ENST00000466781 CUX2O14529 1486 aa11.64□□□□□ -0.55
HPS4-209ENST00000466781 PPP1R15AO75807 674 aaPredicted RBP11.63□□□□□ -0.55
HPS4-209ENST00000466781 SALL2Q9Y467 1007 aaPredicted RBP11.63□□□□□ -0.55
HPS4-209ENST00000466781 CEP164Q9UPV0 1460 aa11.63□□□□□ -0.55
HPS4-209ENST00000466781 FAM9BQ8IZU0 186 aa11.62□□□□□ -0.55
HPS4-209ENST00000466781 PLEKHG5O94827 1062 aa11.62□□□□□ -0.55
HPS4-209ENST00000466781 CCDC88BA6NC98 1476 aa11.62□□□□□ -0.55
HPS4-209ENST00000466781 HAP1P54257 671 aaPredicted RBP11.61□□□□□ -0.55
HPS4-209ENST00000466781 KDM2AQ9Y2K7 1162 aa11.61□□□□□ -0.55
HPS4-209ENST00000466781 TOP2AP11388 1531 aaKnown RBP11.6□□□□□ -0.55
HPS4-209ENST00000466781 SOGA1O94964 1423 aa11.59□□□□□ -0.55
HPS4-209ENST00000466781 HNRNPUQ00839 825 aaKnown RBP eCLIP11.59□□□□□ -0.55
HPS4-209ENST00000466781 WIZO95785 1651 aa11.59□□□□□ -0.55
HPS4-209ENST00000466781 TMC1Q8TDI8 760 aa11.59□□□□□ -0.55
HPS4-209ENST00000466781 EIF5BO60841 1220 aaKnown RBP11.58□□□□□ -0.56
HPS4-209ENST00000466781 FKBP8Q14318 412 aa11.57□□□□□ -0.56
HPS4-209ENST00000466781 SMARCA4P51532 1647 aa11.57□□□□□ -0.56
HPS4-209ENST00000466781 RRP7BPQ9NSQ0 103 aa11.57□□□□□ -0.56
HPS4-209ENST00000466781 CFDP1Q9UEE9 299 aaPredicted RBP11.57□□□□□ -0.56
HPS4-209ENST00000466781 CARMIL1Q5VZK9 1371 aa11.56□□□□□ -0.56
HPS4-209ENST00000466781 CARMIL2Q6F5E8 1435 aa11.56□□□□□ -0.56
HPS4-209ENST00000466781 CADPSQ9ULU8 1353 aa11.54□□□□□ -0.56
HPS4-209ENST00000466781 CCDC136Q96JN2 1154 aa11.53□□□□□ -0.56
HPS4-209ENST00000466781 ARXQ96QS3 562 aa11.53□□□□□ -0.56
HPS4-209ENST00000466781 ATAD2BQ9ULI0 1458 aa11.53□□□□□ -0.56
HPS4-209ENST00000466781 NCLP19338 710 aaKnown RBP11.51□□□□□ -0.57
HPS4-209ENST00000466781 CEP162Q5TB80 1403 aa11.51□□□□□ -0.57
HPS4-209ENST00000466781 HIRIP3Q9BW71 556 aaPredicted RBP11.51□□□□□ -0.57
HPS4-209ENST00000466781 GLIPR1L2Q4G1C9 344 aa11.51□□□□□ -0.57
HPS4-209ENST00000466781 DDX10Q13206 875 aaKnown RBP11.5□□□□□ -0.57
HPS4-209ENST00000466781 ACIN1Q9UKV3 1341 aaKnown RBP11.49□□□□□ -0.57
HPS4-209ENST00000466781 CCNB3Q8WWL7 1395 aa11.49□□□□□ -0.57
HPS4-209ENST00000466781 TULP1O00294 542 aaPredicted RBP11.48□□□□□ -0.57
HPS4-209ENST00000466781 TDRD9Q8NDG6 1382 aaKnown RBP11.48□□□□□ -0.57
HPS4-209ENST00000466781 ABCC8Q09428 1581 aa11.47□□□□□ -0.57
HPS4-209ENST00000466781 NPHP1O15259 732 aa11.47□□□□□ -0.57
HPS4-209ENST00000466781 FANCD2Q9BXW9 1451 aa11.47□□□□□ -0.57
HPS4-209ENST00000466781 FHAD1B1AJZ9 1412 aa11.46□□□□□ -0.57
HPS4-209ENST00000466781 MLECQ14165 292 aa11.46□□□□□ -0.57
HPS4-209ENST00000466781 MRS2Q9HD23 443 aa11.46□□□□□ -0.58
HPS4-209ENST00000466781 KANK1Q14678 1352 aa11.45□□□□□ -0.58
HPS4-209ENST00000466781 TNIKQ9UKE5 1360 aa11.45□□□□□ -0.58
HPS4-209ENST00000466781 ZRSR1Q15695 479 aaKnown RBP11.45□□□□□ -0.58
HPS4-209ENST00000466781 CASC1Q6TDU7 716 aa11.44□□□□□ -0.58
HPS4-209ENST00000466781 NBR1Q14596 966 aa11.43□□□□□ -0.58
HPS4-209ENST00000466781 RGL3Q3MIN7 710 aa11.43□□□□□ -0.58
HPS4-209ENST00000466781 CFAP53Q96M91 514 aa11.43□□□□□ -0.58
HPS4-209ENST00000466781 BECN1Q14457 450 aa11.42□□□□□ -0.58
HPS4-209ENST00000466781 GOLGA6L22H0YM25 854 aa11.41□□□□□ -0.58
HPS4-209ENST00000466781 HDGFP51858 240 aaKnown RBP11.39□□□□□ -0.59
HPS4-209ENST00000466781 OSCARQ8IYS5 282 aa11.39□□□□□ -0.59
HPS4-209ENST00000466781 LMOD2Q6P5Q4 547 aa11.39□□□□□ -0.59
HPS4-209ENST00000466781 DDRGK1Q96HY6 314 aa11.39□□□□□ -0.59
HPS4-209ENST00000466781 PPM1GO15355 546 aaPredicted RBP11.38□□□□□ -0.59
HPS4-209ENST00000466781 SENP3-EIF4A1A0A087X0R7 540 aa11.37□□□□□ -0.59
HPS4-209ENST00000466781 TRIM44Q96DX7 344 aaPredicted RBP11.37□□□□□ -0.59
HPS4-209ENST00000466781 CC2D2AQ9P2K1 1620 aa11.36□□□□□ -0.59
HPS4-209ENST00000466781 CDCA8Q53HL2 280 aa11.36□□□□□ -0.59
HPS4-209ENST00000466781 EIF4G2P78344 907 aaKnown RBP eCLIP11.36□□□□□ -0.59
HPS4-209ENST00000466781 FTSJ3Q8IY81 847 aaKnown RBP11.35□□□□□ -0.59
HPS4-209ENST00000466781 LAS1LQ9Y4W2 734 aaKnown RBP11.34□□□□□ -0.59
HPS4-209ENST00000466781 MAPK8IP3Q9UPT6 1336 aa11.34□□□□□ -0.59
HPS4-209ENST00000466781 POGKQ9P215 609 aa11.34□□□□□ -0.59
HPS4-209ENST00000466781 PTMAP06454 111 aaKnown RBP11.34□□□□□ -0.59
HPS4-209ENST00000466781 ANP32EQ9BTT0 268 aa11.34□□□□□ -0.59
HPS4-209ENST00000466781 RAPGEF2Q9Y4G8 1499 aa11.34□□□□□ -0.59
HPS4-209ENST00000466781 GOLGA2Q08379 1002 aa11.33□□□□□ -0.59
HPS4-209ENST00000466781 TPRNQ4KMQ1 711 aa11.33□□□□□ -0.59
HPS4-209ENST00000466781 TAOK2Q9UL54 1235 aa11.32□□□□□ -0.6
HPS4-209ENST00000466781 KNSTRNQ9Y448 316 aa11.32□□□□□ -0.6
HPS4-209ENST00000466781 IRX6P78412 446 aaPredicted RBP11.32□□□□□ -0.6
HPS4-209ENST00000466781 FMN1Q68DA7 1419 aa11.31□□□□□ -0.6
HPS4-209ENST00000466781 OS9Q13438 667 aaPredicted RBP11.31□□□□□ -0.6
HPS4-209ENST00000466781 CYB5RLQ6IPT4 315 aa11.31□□□□□ -0.6
HPS4-209ENST00000466781 ARHGAP35Q9NRY4 1499 aa11.31□□□□□ -0.6
HPS4-209ENST00000466781 EFCAB2Q5VUJ9 269 aa11.31□□□□□ -0.6
HPS4-209ENST00000466781 GGT6Q6P531 493 aa11.31□□□□□ -0.6
HPS4-209ENST00000466781 NUDCQ9Y266 331 aa11.3□□□□□ -0.6
HPS4-209ENST00000466781 JPH4Q96JJ6 628 aa11.3□□□□□ -0.6
HPS4-209ENST00000466781 GOLGA6L6A8MZA4 724 aa11.29□□□□□ -0.6
HPS4-209ENST00000466781 CLSTN1O94985 981 aa11.29□□□□□ -0.6
HPS4-209ENST00000466781 AEBP2Q6ZN18 517 aaPredicted RBP11.28□□□□□ -0.6
HPS4-209ENST00000466781 NCAPD3P42695 1498 aa11.28□□□□□ -0.6
HPS4-209ENST00000466781 FGD1P98174 961 aa11.28□□□□□ -0.6
HPS4-209ENST00000466781 DNTTIP2Q5QJE6 756 aaKnown RBP11.27□□□□□ -0.6
HPS4-209ENST00000466781 NAP1L2Q9ULW6 460 aaPredicted RBP11.26□□□□□ -0.61
HPS4-209ENST00000466781 NCBP3Q53F19 620 aaKnown RBP11.26□□□□□ -0.61
HPS4-209ENST00000466781 CHMP4BQ9H444 224 aaKnown RBP11.25□□□□□ -0.61
HPS4-209ENST00000466781 MRC2Q9UBG0 1479 aa11.25□□□□□ -0.61
HPS4-209ENST00000466781 GAPVD1Q14C86 1478 aa11.25□□□□□ -0.61
HPS4-209ENST00000466781 PNNQ9H307 717 aaKnown RBP11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms