RNA–Protein interactions for RNA: ENST00000466781.5

HPS4-209, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 6,136 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-209ENST00000466781 DCAF8L2P0C7V8 631 aa15.28■□□□□ 0.04
HPS4-209ENST00000466781 NISCHQ9Y2I1 1504 aa15.09■□□□□ 0.01
HPS4-209ENST00000466781 SHROOM4Q9ULL8 1493 aa14.22□□□□□ -0.13
HPS4-209ENST00000466781 SUPT5HO00267 1087 aaKnown RBP14.21□□□□□ -0.13
HPS4-209ENST00000466781 EHMT2Q96KQ7 1210 aa13.97□□□□□ -0.17
HPS4-209ENST00000466781 PELP1Q8IZL8 1130 aaKnown RBP13.88□□□□□ -0.19
HPS4-209ENST00000466781 FAM9AQ8IZU1 332 aaPredicted RBP13.75□□□□□ -0.21
HPS4-209ENST00000466781 APLP2Q06481 763 aa13.73□□□□□ -0.21
HPS4-209ENST00000466781 TTBK1Q5TCY1 1321 aaPredicted RBP13.41□□□□□ -0.26
HPS4-209ENST00000466781 RANGAP1P46060 587 aaPredicted RBP13.38□□□□□ -0.27
HPS4-209ENST00000466781 ERICH6Q7L0X2 663 aa13.35□□□□□ -0.27
HPS4-209ENST00000466781 ABCC9O60706 1549 aa13.32□□□□□ -0.28
HPS4-209ENST00000466781 ATP1B4Q9UN42 357 aaPredicted RBP13.28□□□□□ -0.28
HPS4-209ENST00000466781 CCER1Q8TC90 406 aaPredicted RBP13.27□□□□□ -0.28
HPS4-209ENST00000466781 PCGF6Q9BYE7 350 aa13.13□□□□□ -0.31
HPS4-209ENST00000466781 TRIM41Q8WV44 630 aa13.11□□□□□ -0.31
HPS4-209ENST00000466781 CENPBP07199 599 aaPredicted RBP13.09□□□□□ -0.31
HPS4-209ENST00000466781 PABPN1Q86U42 306 aaKnown RBP eCLIP13.05□□□□□ -0.32
HPS4-209ENST00000466781 NEFLP07196 543 aa13□□□□□ -0.33
HPS4-209ENST00000466781 UBTFP17480 764 aaKnown RBP12.98□□□□□ -0.33
HPS4-209ENST00000466781 ZEB1P37275 1124 aaPredicted RBP12.97□□□□□ -0.33
HPS4-209ENST00000466781 MYT1LQ9UL68 1186 aa12.97□□□□□ -0.33
HPS4-209ENST00000466781 PPARGC1BQ86YN6 1023 aaKnown RBP12.88□□□□□ -0.35
HPS4-209ENST00000466781 YTHDC1Q96MU7 727 aaKnown RBP12.81□□□□□ -0.36
HPS4-209ENST00000466781 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.8□□□□□ -0.36
HPS4-209ENST00000466781 HNRNPUL2Q1KMD3 747 aaKnown RBP12.8□□□□□ -0.36
HPS4-209ENST00000466781 DAXXQ9UER7 740 aaPredicted RBP12.79□□□□□ -0.36
HPS4-209ENST00000466781 CCDC180Q9P1Z9 1646 aa12.78□□□□□ -0.36
HPS4-209ENST00000466781 POLR3GLQ9BT43 218 aa12.76□□□□□ -0.37
HPS4-209ENST00000466781 CHIC1Q5VXU3 224 aa12.7□□□□□ -0.38
HPS4-209ENST00000466781 SCRIBQ14160 1630 aa12.67□□□□□ -0.38
HPS4-209ENST00000466781 SLC4A1APQ9BWU0 796 aaKnown RBP12.66□□□□□ -0.38
HPS4-209ENST00000466781 ITGAEP38570 1179 aa12.64□□□□□ -0.39
HPS4-209ENST00000466781 MYT1Q01538 1121 aa12.6□□□□□ -0.39
HPS4-209ENST00000466781 RB1CC1Q8TDY2 1594 aa12.58□□□□□ -0.39
HPS4-209ENST00000466781 LOC105371045A0A1W2PR82 267 aa12.57□□□□□ -0.4
HPS4-209ENST00000466781 FBLN2P98095 1184 aa12.57□□□□□ -0.4
HPS4-209ENST00000466781 CNGB1Q14028 1251 aaPredicted RBP12.56□□□□□ -0.4
HPS4-209ENST00000466781 ZNF316A6NFI3 1004 aaPredicted RBP12.47□□□□□ -0.41
HPS4-209ENST00000466781 CLSPNQ9HAW4 1339 aa12.46□□□□□ -0.41
HPS4-209ENST00000466781 ZCCHC6Q5VYS8 1495 aaKnown RBP12.46□□□□□ -0.41
HPS4-209ENST00000466781 TRIM26Q12899 539 aaPredicted RBP12.42□□□□□ -0.42
HPS4-209ENST00000466781 NACADO15069 1562 aa12.38□□□□□ -0.43
HPS4-209ENST00000466781 RTL5Q5HYW3 569 aaPredicted RBP12.34□□□□□ -0.43
HPS4-209ENST00000466781 ZBTB47Q9UFB7 747 aaPredicted RBP12.33□□□□□ -0.44
HPS4-209ENST00000466781 TRIM52Q96A61 297 aa12.32□□□□□ -0.44
HPS4-209ENST00000466781 FAM50AQ14320 339 aaKnown RBP12.31□□□□□ -0.44
HPS4-209ENST00000466781 SLC24A1O60721 1099 aa12.29□□□□□ -0.44
HPS4-209ENST00000466781 ARID3CA6NKF2 412 aa12.27□□□□□ -0.44
HPS4-209ENST00000466781 BCANQ96GW7 911 aa12.25□□□□□ -0.45
HPS4-209ENST00000466781 HRCP23327 699 aa12.23□□□□□ -0.45
HPS4-209ENST00000466781 P3H3Q8IVL6 736 aa12.21□□□□□ -0.45
HPS4-209ENST00000466781 NPM1P06748 294 aaKnown RBP eCLIP12.2□□□□□ -0.46
HPS4-209ENST00000466781 ZNF326Q5BKZ1 582 aaKnown RBP12.19□□□□□ -0.46
HPS4-209ENST00000466781 NEFMP07197 916 aa12.18□□□□□ -0.46
HPS4-209ENST00000466781 CANXP27824 592 aaKnown RBP12.17□□□□□ -0.46
HPS4-209ENST00000466781 NEUROD1Q13562 356 aa12.17□□□□□ -0.46
HPS4-209ENST00000466781 ERCC6Q03468 1493 aa12.15□□□□□ -0.46
HPS4-209ENST00000466781 BCL11AQ9H165 835 aa12.14□□□□□ -0.47
HPS4-209ENST00000466781 BAZ1BQ9UIG0 1483 aaKnown RBP12.12□□□□□ -0.47
HPS4-209ENST00000466781 ESF1Q9H501 851 aaKnown RBP12.11□□□□□ -0.47
HPS4-209ENST00000466781 CDK11AQ9UQ88 783 aaPredicted RBP12.1□□□□□ -0.47
HPS4-209ENST00000466781 CHMP7Q8WUX9 453 aaPredicted RBP12.1□□□□□ -0.47
HPS4-209ENST00000466781 ANP32CO43423 234 aa12.08□□□□□ -0.48
HPS4-209ENST00000466781 ZNF777Q9ULD5 760 aaPredicted RBP12.08□□□□□ -0.48
HPS4-209ENST00000466781 DIEXFQ68CQ4 756 aaKnown RBP12.07□□□□□ -0.48
HPS4-209ENST00000466781 CSRNP3Q8WYN3 585 aa12.07□□□□□ -0.48
HPS4-209ENST00000466781 PLPPR3Q6T4P5 718 aa12.04□□□□□ -0.48
HPS4-209ENST00000466781 STAG3Q9UJ98 1225 aa11.98□□□□□ -0.49
HPS4-209ENST00000466781 DCAF1Q9Y4B6 1507 aa11.95□□□□□ -0.5
HPS4-209ENST00000466781 BAZ1AQ9NRL2 1556 aaPredicted RBP11.94□□□□□ -0.5
HPS4-209ENST00000466781 CHGAP10645 457 aaKnown RBP11.9□□□□□ -0.5
HPS4-209ENST00000466781 RSF1Q96T23 1441 aaPredicted RBP11.88□□□□□ -0.51
HPS4-209ENST00000466781 ANP32BQ92688 251 aaKnown RBP11.86□□□□□ -0.51
HPS4-209ENST00000466781 ANP32AP39687 249 aaKnown RBP11.86□□□□□ -0.51
HPS4-209ENST00000466781 HSP90AA1P07900 732 aaKnown RBP11.84□□□□□ -0.51
HPS4-209ENST00000466781 SMARCA2P51531 1590 aa11.84□□□□□ -0.51
HPS4-209ENST00000466781 SCAF1Q9H7N4 1312 aaKnown RBP11.82□□□□□ -0.52
HPS4-209ENST00000466781 NPM2Q86SE8 214 aaKnown RBP11.82□□□□□ -0.52
HPS4-209ENST00000466781 KCNH8Q96L42 1107 aa11.81□□□□□ -0.52
HPS4-209ENST00000466781 WRNQ14191 1432 aaPredicted RBP eCLIP11.79□□□□□ -0.529e-6■■■■■ 50.1
HPS4-209ENST00000466781 UPF2Q9HAU5 1272 aaKnown RBP11.78□□□□□ -0.52
HPS4-209ENST00000466781 A0A0G2JS52 829 aa11.78□□□□□ -0.52
HPS4-209ENST00000466781 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.78□□□□□ -0.526e-6■□□□□ 8.2
HPS4-209ENST00000466781 PDS5BQ9NTI5 1447 aa11.78□□□□□ -0.52
HPS4-209ENST00000466781 SENP3Q9H4L4 574 aaPredicted RBP11.78□□□□□ -0.52
HPS4-209ENST00000466781 CHIC2Q9UKJ5 165 aa11.78□□□□□ -0.52
HPS4-209ENST00000466781 CECR2Q9BXF3 1484 aa11.77□□□□□ -0.52
HPS4-209ENST00000466781 KIF27Q86VH2 1401 aa11.77□□□□□ -0.53
HPS4-209ENST00000466781 TRHP20396 242 aaPredicted RBP11.76□□□□□ -0.53
HPS4-209ENST00000466781 ARID4BQ4LE39 1312 aaPredicted RBP11.76□□□□□ -0.53
HPS4-209ENST00000466781 MTUS2Q5JR59 1369 aa11.76□□□□□ -0.53
HPS4-209ENST00000466781 GTF3C3Q9Y5Q9 886 aa11.75□□□□□ -0.53
HPS4-209ENST00000466781 TSPY4P0CV99 314 aa11.75□□□□□ -0.53
HPS4-209ENST00000466781 TSPY10P0CW01 314 aa11.75□□□□□ -0.53
HPS4-209ENST00000466781 PLEKHD1A6NEE1 506 aa11.75□□□□□ -0.53
HPS4-209ENST00000466781 CDK11BP21127 795 aaKnown RBP11.74□□□□□ -0.53
HPS4-209ENST00000466781 EIF4G1Q04637 1599 aaKnown RBP11.74□□□□□ -0.53
HPS4-209ENST00000466781 TONSLQ96HA7 1378 aa11.71□□□□□ -0.54
HPS4-209ENST00000466781 EEA1Q15075 1411 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 142.2 ms