RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 TDRD9Q8NDG6 1382 aaKnown RBP8.87□□□□□ -0.99
VPS13D-202ENST00000460333 RAD54L2Q9Y4B4 1467 aa8.87□□□□□ -0.99
VPS13D-202ENST00000460333 MRC2Q9UBG0 1479 aa8.86□□□□□ -0.99
VPS13D-202ENST00000460333 GAPVD1Q14C86 1478 aa8.85□□□□□ -0.99
VPS13D-202ENST00000460333 RTL5Q5HYW3 569 aaPredicted RBP8.84□□□□□ -0.99
VPS13D-202ENST00000460333 CHMP7Q8WUX9 453 aaPredicted RBP8.83□□□□□ -1
VPS13D-202ENST00000460333 URB2Q14146 1524 aaKnown RBP8.81□□□□□ -1
VPS13D-202ENST00000460333 SCAF1Q9H7N4 1312 aaKnown RBP8.81□□□□□ -1
VPS13D-202ENST00000460333 CUL7Q14999 1698 aa8.81□□□□□ -1
VPS13D-202ENST00000460333 ITGAEP38570 1179 aa8.81□□□□□ -1
VPS13D-202ENST00000460333 FMN1Q68DA7 1419 aa8.8□□□□□ -1
VPS13D-202ENST00000460333 FAM50AQ14320 339 aaKnown RBP8.8□□□□□ -1
VPS13D-202ENST00000460333 IFT140Q96RY7 1462 aa8.8□□□□□ -1
VPS13D-202ENST00000460333 CDK11AQ9UQ88 783 aaPredicted RBP8.8□□□□□ -1
VPS13D-202ENST00000460333 NPM1P06748 294 aaKnown RBP eCLIP8.79□□□□□ -1
VPS13D-202ENST00000460333 DNAJC5BQ9UF47 199 aa8.78□□□□□ -1
VPS13D-202ENST00000460333 GRIN2BQ13224 1484 aa8.77□□□□□ -1
VPS13D-202ENST00000460333 MTUS2Q5JR59 1369 aa8.77□□□□□ -1
VPS13D-202ENST00000460333 EFCAB5A4FU69 1503 aa8.76□□□□□ -1.01
VPS13D-202ENST00000460333 ARHGAP35Q9NRY4 1499 aa8.75□□□□□ -1.01
VPS13D-202ENST00000460333 DAXXQ9UER7 740 aaPredicted RBP8.75□□□□□ -1.01
VPS13D-202ENST00000460333 ARAP1Q96P48 1450 aa8.75□□□□□ -1.01
VPS13D-202ENST00000460333 ZNF316A6NFI3 1004 aaPredicted RBP8.75□□□□□ -1.01
VPS13D-202ENST00000460333 KIF21AQ7Z4S6 1674 aa8.73□□□□□ -1.01
VPS13D-202ENST00000460333 AQRO60306 1485 aaKnown RBP eCLIP8.73□□□□□ -1.012e-6■■■■□ 20.1
VPS13D-202ENST00000460333 FHOD3Q2V2M9 1422 aa8.73□□□□□ -1.01
VPS13D-202ENST00000460333 CCNB3Q8WWL7 1395 aa8.73□□□□□ -1.01
VPS13D-202ENST00000460333 KANK4Q5T7N3 995 aaPredicted RBP8.72□□□□□ -1.01
VPS13D-202ENST00000460333 CARMIL2Q6F5E8 1435 aa8.7□□□□□ -1.02
VPS13D-202ENST00000460333 CASKIN1Q8WXD9 1431 aa8.69□□□□□ -1.02
VPS13D-202ENST00000460333 FYCO1Q9BQS8 1478 aa8.69□□□□□ -1.02
VPS13D-202ENST00000460333 NEUROD1Q13562 356 aa8.69□□□□□ -1.02
VPS13D-202ENST00000460333 MAP3K1Q13233 1512 aa8.68□□□□□ -1.02
VPS13D-202ENST00000460333 WDR97A6NE52 1622 aa8.68□□□□□ -1.02
VPS13D-202ENST00000460333 WDR62O43379 1518 aa8.68□□□□□ -1.02
VPS13D-202ENST00000460333 ABCA5Q8WWZ7 1642 aa8.67□□□□□ -1.02
VPS13D-202ENST00000460333 MAGI1Q96QZ7 1491 aaPredicted RBP8.65□□□□□ -1.02
VPS13D-202ENST00000460333 ARID3CA6NKF2 412 aa8.65□□□□□ -1.02
VPS13D-202ENST00000460333 LRRC9Q6ZRR7 1453 aa8.65□□□□□ -1.02
VPS13D-202ENST00000460333 CTTNBP2Q8WZ74 1663 aa8.65□□□□□ -1.02
VPS13D-202ENST00000460333 SNAPC4Q5SXM2 1469 aa8.65□□□□□ -1.02
VPS13D-202ENST00000460333 CCDC18Q5T9S5 1454 aa8.65□□□□□ -1.02
VPS13D-202ENST00000460333 TIAM1Q13009 1591 aa8.64□□□□□ -1.03
VPS13D-202ENST00000460333 ANP32EQ9BTT0 268 aa8.64□□□□□ -1.03
VPS13D-202ENST00000460333 IQGAP2Q13576 1575 aa8.64□□□□□ -1.03
VPS13D-202ENST00000460333 KIAA0586Q9BVV6 1533 aa8.64□□□□□ -1.03
VPS13D-202ENST00000460333 TARBP1Q13395 1621 aaKnown RBP8.63□□□□□ -1.03
VPS13D-202ENST00000460333 PLEKHD1A6NEE1 506 aa8.63□□□□□ -1.03
VPS13D-202ENST00000460333 JPH4Q96JJ6 628 aa8.63□□□□□ -1.03
VPS13D-202ENST00000460333 RRBP1Q9P2E9 1410 aaKnown RBP8.63□□□□□ -1.03
VPS13D-202ENST00000460333 SYNJ2O15056 1496 aa8.62□□□□□ -1.03
VPS13D-202ENST00000460333 ADAMTS12P58397 1594 aa8.61□□□□□ -1.03
VPS13D-202ENST00000460333 ESF1Q9H501 851 aaKnown RBP8.61□□□□□ -1.03
VPS13D-202ENST00000460333 TRIM52Q96A61 297 aa8.61□□□□□ -1.03
VPS13D-202ENST00000460333 ZNF608Q9ULD9 1512 aaPredicted RBP8.61□□□□□ -1.03
VPS13D-202ENST00000460333 PBRM1Q86U86 1689 aa8.61□□□□□ -1.03
VPS13D-202ENST00000460333 GRIN2AQ12879 1464 aa8.61□□□□□ -1.03
VPS13D-202ENST00000460333 SETD5Q9C0A6 1442 aa8.6□□□□□ -1.03
VPS13D-202ENST00000460333 GLIPR1L2Q4G1C9 344 aa8.6□□□□□ -1.03
VPS13D-202ENST00000460333 PCF11O94913 1555 aaKnown RBP8.6□□□□□ -1.03
VPS13D-202ENST00000460333 HECW1Q76N89 1606 aa8.59□□□□□ -1.03
VPS13D-202ENST00000460333 BCANQ96GW7 911 aa8.58□□□□□ -1.04
VPS13D-202ENST00000460333 THOC2Q8NI27 1593 aaKnown RBP8.58□□□□□ -1.04
VPS13D-202ENST00000460333 ZNF777Q9ULD5 760 aaPredicted RBP8.57□□□□□ -1.04
VPS13D-202ENST00000460333 EHBP1L1Q8N3D4 1523 aa8.57□□□□□ -1.04
VPS13D-202ENST00000460333 CFDP1Q9UEE9 299 aaPredicted RBP8.57□□□□□ -1.04
VPS13D-202ENST00000460333 TRHP20396 242 aaPredicted RBP8.56□□□□□ -1.04
VPS13D-202ENST00000460333 EIF4G3O43432 1585 aaKnown RBP8.56□□□□□ -1.04
VPS13D-202ENST00000460333 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.56□□□□□ -1.04
VPS13D-202ENST00000460333 PHLDB1Q86UU1 1377 aa8.56□□□□□ -1.04
VPS13D-202ENST00000460333 MYOM3Q5VTT5 1437 aa8.55□□□□□ -1.04
VPS13D-202ENST00000460333 FGD6Q6ZV73 1430 aa8.55□□□□□ -1.04
VPS13D-202ENST00000460333 ANP32AP39687 249 aaKnown RBP8.55□□□□□ -1.04
VPS13D-202ENST00000460333 UGGT2Q9NYU1 1516 aa8.55□□□□□ -1.04
VPS13D-202ENST00000460333 BCL11AQ9H165 835 aa8.55□□□□□ -1.04
VPS13D-202ENST00000460333 RAB3GAP2Q9H2M9 1393 aa8.54□□□□□ -1.04
VPS13D-202ENST00000460333 TSPY4P0CV99 314 aa8.54□□□□□ -1.04
VPS13D-202ENST00000460333 TSPY10P0CW01 314 aa8.54□□□□□ -1.04
VPS13D-202ENST00000460333 CHIC2Q9UKJ5 165 aa8.54□□□□□ -1.04
VPS13D-202ENST00000460333 NCOA2Q15596 1464 aa8.54□□□□□ -1.04
VPS13D-202ENST00000460333 ANP32CO43423 234 aa8.54□□□□□ -1.04
VPS13D-202ENST00000460333 PTPRGP23470 1445 aa8.54□□□□□ -1.04
VPS13D-202ENST00000460333 SAMD9Q5K651 1589 aa8.54□□□□□ -1.04
VPS13D-202ENST00000460333 TIMELESSQ9UNS1 1208 aa8.54□□□□□ -1.04
VPS13D-202ENST00000460333 SUPT6HQ7KZ85 1726 aaKnown RBP8.53□□□□□ -1.04
VPS13D-202ENST00000460333 CFAP43Q8NDM7 1665 aa8.53□□□□□ -1.04
VPS13D-202ENST00000460333 TONSLQ96HA7 1378 aa8.52□□□□□ -1.04
VPS13D-202ENST00000460333 EPRSP07814 1512 aaKnown RBP8.52□□□□□ -1.05
VPS13D-202ENST00000460333 RRP7BPQ9NSQ0 103 aa8.51□□□□□ -1.05
VPS13D-202ENST00000460333 DHX57Q6P158 1386 aaKnown RBP8.51□□□□□ -1.05
VPS13D-202ENST00000460333 MIA2Q96PC5 1412 aa8.51□□□□□ -1.05
VPS13D-202ENST00000460333 PRG4Q92954 1404 aaPredicted RBP8.5□□□□□ -1.05
VPS13D-202ENST00000460333 KIAA0556O60303 1618 aa8.49□□□□□ -1.05
VPS13D-202ENST00000460333 NUP160Q12769 1436 aa8.48□□□□□ -1.05
VPS13D-202ENST00000460333 FKBP8Q14318 412 aa8.48□□□□□ -1.05
VPS13D-202ENST00000460333 TROQ12816 1431 aaPredicted RBP8.48□□□□□ -1.05
VPS13D-202ENST00000460333 RSPH4AQ5TD94 716 aa8.47□□□□□ -1.05
VPS13D-202ENST00000460333 RAPGEF6Q8TEU7 1601 aa8.46□□□□□ -1.06
VPS13D-202ENST00000460333 EIF5BO60841 1220 aaKnown RBP8.46□□□□□ -1.06
VPS13D-202ENST00000460333 KCNH8Q96L42 1107 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms