RNA–Protein interactions for RNA: ENST00000453705.1

BRCC3-208, Transcript of BRCA1/BRCA2-containing complex subunit 3, humanhuman

TSL 5

Gene BRCC3, Length 2,694 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCC3-208ENST00000453705 CFAP44Q96MT7 982 aa12.01□□□□□ -0.49
BRCC3-208ENST00000453705 SYNJ1O43426 1573 aa12□□□□□ -0.49
BRCC3-208ENST00000453705 WRNQ14191 1432 aaPredicted RBP eCLIP11.99□□□□□ -0.49
BRCC3-208ENST00000453705 TRIM41Q8WV44 630 aa11.99□□□□□ -0.49
BRCC3-208ENST00000453705 UBE2Q2Q8WVN8 375 aa11.98□□□□□ -0.49
BRCC3-208ENST00000453705 FAM9AQ8IZU1 332 aaPredicted RBP11.96□□□□□ -0.49
BRCC3-208ENST00000453705 TSHZ2Q9NRE2 1034 aa11.96□□□□□ -0.5
BRCC3-208ENST00000453705 CDK11BP21127 795 aaKnown RBP11.95□□□□□ -0.5
BRCC3-208ENST00000453705 PAXIP1Q6ZW49 1069 aaPredicted RBP11.95□□□□□ -0.5
BRCC3-208ENST00000453705 CDK11AQ9UQ88 783 aaPredicted RBP11.95□□□□□ -0.5
BRCC3-208ENST00000453705 KIF21BO75037 1637 aa11.95□□□□□ -0.5
BRCC3-208ENST00000453705 ARID3AQ99856 593 aa11.94□□□□□ -0.5
BRCC3-208ENST00000453705 LAMC3Q9Y6N6 1575 aa11.91□□□□□ -0.5
BRCC3-208ENST00000453705 CNKSR2Q8WXI2 1034 aa11.91□□□□□ -0.5
BRCC3-208ENST00000453705 NBR1Q14596 966 aa11.88□□□□□ -0.51
BRCC3-208ENST00000453705 CADPSQ9ULU8 1353 aa11.88□□□□□ -0.51
BRCC3-208ENST00000453705 PDE4CQ08493 712 aa11.87□□□□□ -0.51
BRCC3-208ENST00000453705 CUX1P39880 1505 aa11.87□□□□□ -0.51
BRCC3-208ENST00000453705 ERICH3Q5RHP9 1530 aa11.84□□□□□ -0.51
BRCC3-208ENST00000453705 NPM1P06748 294 aaKnown RBP eCLIP11.83□□□□□ -0.52
BRCC3-208ENST00000453705 NECTIN2Q92692 538 aa11.82□□□□□ -0.52
BRCC3-208ENST00000453705 FOXD4L1Q9NU39 408 aa11.82□□□□□ -0.52
BRCC3-208ENST00000453705 DNMBPQ6XZF7 1577 aa11.81□□□□□ -0.52
BRCC3-208ENST00000453705 CEP164Q9UPV0 1460 aa11.8□□□□□ -0.52
BRCC3-208ENST00000453705 GOLGA3Q08378 1498 aa11.79□□□□□ -0.52
BRCC3-208ENST00000453705 WDR97A6NE52 1622 aa11.79□□□□□ -0.52
BRCC3-208ENST00000453705 TNIKQ9UKE5 1360 aa11.79□□□□□ -0.52
BRCC3-208ENST00000453705 SOGA1O94964 1423 aa11.78□□□□□ -0.52
BRCC3-208ENST00000453705 BRD2P25440 801 aaKnown RBP11.77□□□□□ -0.53
BRCC3-208ENST00000453705 CCDC9Q9Y3X0 531 aaKnown RBP11.77□□□□□ -0.53
BRCC3-208ENST00000453705 PRXQ9BXM0 1461 aa11.74□□□□□ -0.53
BRCC3-208ENST00000453705 FANCD2Q9BXW9 1451 aa11.74□□□□□ -0.53
BRCC3-208ENST00000453705 ZNF428Q96B54 188 aa11.73□□□□□ -0.53
BRCC3-208ENST00000453705 RUSC2Q8N2Y8 1516 aa11.72□□□□□ -0.53
BRCC3-208ENST00000453705 PKD2Q13563 968 aa11.71□□□□□ -0.54
BRCC3-208ENST00000453705 C1orf115Q9H7X2 142 aa11.71□□□□□ -0.54
BRCC3-208ENST00000453705 ABCA10Q8WWZ4 1543 aa11.69□□□□□ -0.54
BRCC3-208ENST00000453705 KIF27Q86VH2 1401 aa11.69□□□□□ -0.54
BRCC3-208ENST00000453705 NESP48681 1621 aa11.68□□□□□ -0.54
BRCC3-208ENST00000453705 HSP90B1P14625 803 aaKnown RBP11.68□□□□□ -0.54
BRCC3-208ENST00000453705 TOPBP1Q92547 1522 aa11.68□□□□□ -0.54
BRCC3-208ENST00000453705 KIF21AQ7Z4S6 1674 aa11.68□□□□□ -0.54
BRCC3-208ENST00000453705 CUL7Q14999 1698 aa11.67□□□□□ -0.54
BRCC3-208ENST00000453705 FGD5Q6ZNL6 1462 aa11.66□□□□□ -0.54
BRCC3-208ENST00000453705 BCL11BQ9C0K0 894 aaPredicted RBP11.66□□□□□ -0.54
BRCC3-208ENST00000453705 PDS5BQ9NTI5 1447 aa11.66□□□□□ -0.54
BRCC3-208ENST00000453705 ABCA5Q8WWZ7 1642 aa11.65□□□□□ -0.55
BRCC3-208ENST00000453705 POLR3GLQ9BT43 218 aa11.64□□□□□ -0.55
BRCC3-208ENST00000453705 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.64□□□□□ -0.55
BRCC3-208ENST00000453705 CEP162Q5TB80 1403 aa11.64□□□□□ -0.55
BRCC3-208ENST00000453705 TAF7LQ5H9L4 462 aa11.64□□□□□ -0.55
BRCC3-208ENST00000453705 CUX2O14529 1486 aa11.64□□□□□ -0.55
BRCC3-208ENST00000453705 BRPF1P55201 1214 aaPredicted RBP11.63□□□□□ -0.55
BRCC3-208ENST00000453705 URB2Q14146 1524 aaKnown RBP11.62□□□□□ -0.55
BRCC3-208ENST00000453705 POLA1P09884 1462 aaPredicted RBP11.61□□□□□ -0.55
BRCC3-208ENST00000453705 TARBP1Q13395 1621 aaKnown RBP11.6□□□□□ -0.55
BRCC3-208ENST00000453705 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.6□□□□□ -0.55
BRCC3-208ENST00000453705 RAPGEF2Q9Y4G8 1499 aa11.59□□□□□ -0.55
BRCC3-208ENST00000453705 IRX6P78412 446 aaPredicted RBP11.59□□□□□ -0.55
BRCC3-208ENST00000453705 BBXQ8WY36 941 aaPredicted RBP11.58□□□□□ -0.56
BRCC3-208ENST00000453705 WDR62O43379 1518 aa11.58□□□□□ -0.56
BRCC3-208ENST00000453705 ARID3CA6NKF2 412 aa11.57□□□□□ -0.56
BRCC3-208ENST00000453705 ZBTB7CA1YPR0 619 aa11.56□□□□□ -0.56
BRCC3-208ENST00000453705 CTTNBP2Q8WZ74 1663 aa11.56□□□□□ -0.56
BRCC3-208ENST00000453705 MRC2Q9UBG0 1479 aa11.55□□□□□ -0.56
BRCC3-208ENST00000453705 MAPK8IP2Q13387 824 aaPredicted RBP11.54□□□□□ -0.56
BRCC3-208ENST00000453705 IGF1RP08069 1367 aa11.53□□□□□ -0.56
BRCC3-208ENST00000453705 PUS7Q96PZ0 661 aaKnown RBP11.53□□□□□ -0.56
BRCC3-208ENST00000453705 PBRM1Q86U86 1689 aa11.53□□□□□ -0.56
BRCC3-208ENST00000453705 VPS8Q8N3P4 1428 aa11.51□□□□□ -0.57
BRCC3-208ENST00000453705 NEFLP07196 543 aa11.51□□□□□ -0.57
BRCC3-208ENST00000453705 THOC2Q8NI27 1593 aaKnown RBP11.51□□□□□ -0.57
BRCC3-208ENST00000453705 ERCC6Q03468 1493 aa11.51□□□□□ -0.57
BRCC3-208ENST00000453705 CLIP1P30622 1438 aa11.51□□□□□ -0.57
BRCC3-208ENST00000453705 MAP3K1Q13233 1512 aa11.5□□□□□ -0.57
BRCC3-208ENST00000453705 EFCAB5A4FU69 1503 aa11.5□□□□□ -0.57
BRCC3-208ENST00000453705 PKNOX2Q96KN3 472 aa11.5□□□□□ -0.57
BRCC3-208ENST00000453705 HMGB1P09429 215 aaKnown RBP11.48□□□□□ -0.57
BRCC3-208ENST00000453705 CCDC136Q96JN2 1154 aa11.48□□□□□ -0.57
BRCC3-208ENST00000453705 ARAP1Q96P48 1450 aa11.47□□□□□ -0.57
BRCC3-208ENST00000453705 FOXD4L5Q5VV16 416 aaPredicted RBP11.47□□□□□ -0.57
BRCC3-208ENST00000453705 FOXD4L4Q8WXT5 416 aaPredicted RBP11.47□□□□□ -0.57
BRCC3-208ENST00000453705 IFT140Q96RY7 1462 aa11.45□□□□□ -0.58
BRCC3-208ENST00000453705 SPRYD3Q8NCJ5 442 aa11.45□□□□□ -0.58
BRCC3-208ENST00000453705 RAD54L2Q9Y4B4 1467 aa11.45□□□□□ -0.58
BRCC3-208ENST00000453705 RAD21O60216 631 aa11.44□□□□□ -0.58
BRCC3-208ENST00000453705 IFNLR1Q8IU57 520 aaPredicted RBP11.44□□□□□ -0.58
BRCC3-208ENST00000453705 CARMIL1Q5VZK9 1371 aa11.44□□□□□ -0.58
BRCC3-208ENST00000453705 ADAMTS12P58397 1594 aa11.44□□□□□ -0.58
BRCC3-208ENST00000453705 SAMD9Q5K651 1589 aa11.44□□□□□ -0.58
BRCC3-208ENST00000453705 KCTD17Q8N5Z5 321 aa11.43□□□□□ -0.58
BRCC3-208ENST00000453705 MTMR7Q9Y216 660 aa11.43□□□□□ -0.58
BRCC3-208ENST00000453705 CFAP43Q8NDM7 1665 aa11.43□□□□□ -0.58
BRCC3-208ENST00000453705 AQRO60306 1485 aaKnown RBP eCLIP11.42□□□□□ -0.583e-7■■■□□ 19
BRCC3-208ENST00000453705 GAPVD1Q14C86 1478 aa11.42□□□□□ -0.58
BRCC3-208ENST00000453705 ARHGAP35Q9NRY4 1499 aa11.42□□□□□ -0.58
BRCC3-208ENST00000453705 RBM25P49756 843 aaKnown RBP11.41□□□□□ -0.58
BRCC3-208ENST00000453705 ZMYND15Q9H091 742 aa11.41□□□□□ -0.58
BRCC3-208ENST00000453705 BRPF3Q9ULD4 1205 aa11.41□□□□□ -0.58
BRCC3-208ENST00000453705 ZNF692Q9BU19 519 aaPredicted RBP11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms