RNA–Protein interactions for RNA: ENST00000449544.5

HCG18-238, Transcript of HLA complex group 18, human

TSL 2 BASIC

Gene HCG18, Length 4,262 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HCG18-238	ENST00000449544	SENP3	Q9H4L4	574 aa	Predicted RBP	12.44	□□□□□ -0.42
HCG18-238	ENST00000449544	PPP1R15A	O75807	674 aa	Predicted RBP	12.44	□□□□□ -0.42
HCG18-238	ENST00000449544	PCGF6	Q9BYE7	350 aa		12.44	□□□□□ -0.42
HCG18-238	ENST00000449544	CFDP1	Q9UEE9	299 aa	Predicted RBP	12.44	□□□□□ -0.42
HCG18-238	ENST00000449544	FGD5	Q6ZNL6	1462 aa		12.41	□□□□□ -0.42
HCG18-238	ENST00000449544	GRIN2B	Q13224	1484 aa		12.4	□□□□□ -0.42
HCG18-238	ENST00000449544	UNC13A	Q9UPW8	1703 aa		12.39	□□□□□ -0.43
HCG18-238	ENST00000449544	EFCAB2	Q5VUJ9	269 aa		12.39	□□□□□ -0.43
HCG18-238	ENST00000449544	POLR3GL	Q9BT43	218 aa		12.37	□□□□□ -0.43
HCG18-238	ENST00000449544	CHIC2	Q9UKJ5	165 aa		12.37	□□□□□ -0.43
HCG18-238	ENST00000449544	GGT6	Q6P531	493 aa		12.36	□□□□□ -0.43
HCG18-238	ENST00000449544	TOPBP1	Q92547	1522 aa		12.33	□□□□□ -0.44
HCG18-238	ENST00000449544	ZNF326	Q5BKZ1	582 aa	Known RBP	12.32	□□□□□ -0.44
HCG18-238	ENST00000449544	EEA1	Q15075	1411 aa		12.32	□□□□□ -0.44
HCG18-238	ENST00000449544	PRG4	Q92954	1404 aa	Predicted RBP	12.31	□□□□□ -0.44
HCG18-238	ENST00000449544	SNAPC4	Q5SXM2	1469 aa		12.29	□□□□□ -0.44
HCG18-238	ENST00000449544	FHAD1	B1AJZ9	1412 aa		12.28	□□□□□ -0.44
HCG18-238	ENST00000449544	CCER1	Q8TC90	406 aa	Predicted RBP	12.27	□□□□□ -0.44
HCG18-238	ENST00000449544	CLIP1	P30622	1438 aa		12.27	□□□□□ -0.45
HCG18-238	ENST00000449544	HAP1	P54257	671 aa	Predicted RBP	12.27	□□□□□ -0.45
HCG18-238	ENST00000449544	PLEKHG5	O94827	1062 aa		12.26	□□□□□ -0.45
HCG18-238	ENST00000449544	POLA1	P09884	1462 aa	Predicted RBP	12.25	□□□□□ -0.45
HCG18-238	ENST00000449544	CCNB3	Q8WWL7	1395 aa		12.24	□□□□□ -0.45
HCG18-238	ENST00000449544	TNIK	Q9UKE5	1360 aa		12.22	□□□□□ -0.45
HCG18-238	ENST00000449544	RAPGEF2	Q9Y4G8	1499 aa		12.22	□□□□□ -0.45
HCG18-238	ENST00000449544	GOLGA3	Q08378	1498 aa		12.22	□□□□□ -0.45
HCG18-238	ENST00000449544	HDGF	P51858	240 aa	Known RBP	12.21	□□□□□ -0.45
HCG18-238	ENST00000449544	ZNF608	Q9ULD9	1512 aa	Predicted RBP	12.21	□□□□□ -0.46
HCG18-238	ENST00000449544	IGF1R	P08069	1367 aa		12.17	□□□□□ -0.46
HCG18-238	ENST00000449544	DNMBP	Q6XZF7	1577 aa		12.17	□□□□□ -0.46
HCG18-238	ENST00000449544	SPAG9	O60271	1321 aa	Known RBP	12.17	□□□□□ -0.46
HCG18-238	ENST00000449544	URB2	Q14146	1524 aa	Known RBP	12.17	□□□□□ -0.46
HCG18-238	ENST00000449544		A0A0G2JS52	829 aa		12.16	□□□□□ -0.46
HCG18-238	ENST00000449544	KIF3B	O15066	747 aa		12.15	□□□□□ -0.46
HCG18-238	ENST00000449544	MYT1	Q01538	1121 aa		12.15	□□□□□ -0.46
HCG18-238	ENST00000449544	CNGB1	Q14028	1251 aa	Predicted RBP	12.15	□□□□□ -0.46
HCG18-238	ENST00000449544	SYNJ2	O15056	1496 aa		12.15	□□□□□ -0.46
HCG18-238	ENST00000449544	RRP7BP	Q9NSQ0	103 aa		12.14	□□□□□ -0.47
HCG18-238	ENST00000449544	LMOD2	Q6P5Q4	547 aa		12.14	□□□□□ -0.47
HCG18-238	ENST00000449544	EID1	Q9Y6B2	187 aa		12.14	□□□□□ -0.47
HCG18-238	ENST00000449544	WASHC2C	Q9Y4E1	1318 aa		12.13	□□□□□ -0.47
HCG18-238	ENST00000449544	NEUROD1	Q13562	356 aa		12.12	□□□□□ -0.47
HCG18-238	ENST00000449544	MAGI1	Q96QZ7	1491 aa	Predicted RBP	12.12	□□□□□ -0.47
HCG18-238	ENST00000449544	KANK1	Q14678	1352 aa		12.12	□□□□□ -0.47
HCG18-238	ENST00000449544	SYNJ1	O43426	1573 aa		12.12	□□□□□ -0.47
HCG18-238	ENST00000449544	FMN1	Q68DA7	1419 aa		12.1	□□□□□ -0.47
HCG18-238	ENST00000449544	HNRNPM	P52272	730 aa	Known RBP eCLIP	12.1	□□□□□ -0.47	2e-7	■□□□□ 10.1
HCG18-238	ENST00000449544	FHOD3	Q2V2M9	1422 aa		12.08	□□□□□ -0.48
HCG18-238	ENST00000449544	RAPGEF3	O95398	923 aa		12.07	□□□□□ -0.48
HCG18-238	ENST00000449544	ZBTB7C	A1YPR0	619 aa		12.06	□□□□□ -0.48
HCG18-238	ENST00000449544	PHF23	Q9BUL5	403 aa	Predicted RBP	12.06	□□□□□ -0.48
HCG18-238	ENST00000449544	SLC24A1	O60721	1099 aa		12.05	□□□□□ -0.48
HCG18-238	ENST00000449544	PEG3	Q9GZU2	1588 aa		12.05	□□□□□ -0.48
HCG18-238	ENST00000449544	RGL3	Q3MIN7	710 aa		12.04	□□□□□ -0.48
HCG18-238	ENST00000449544	POGZ	Q7Z3K3	1410 aa		12.03	□□□□□ -0.48
HCG18-238	ENST00000449544	KDM2A	Q9Y2K7	1162 aa		12.02	□□□□□ -0.49
HCG18-238	ENST00000449544	GRIN2A	Q12879	1464 aa		12.02	□□□□□ -0.49
HCG18-238	ENST00000449544	RSPH4A	Q5TD94	716 aa		12.02	□□□□□ -0.49
HCG18-238	ENST00000449544	CUX1	P39880	1505 aa		12.01	□□□□□ -0.49
HCG18-238	ENST00000449544	UACA	Q9BZF9	1416 aa		12	□□□□□ -0.49
HCG18-238	ENST00000449544	KIAA0586	Q9BVV6	1533 aa		11.99	□□□□□ -0.49
HCG18-238	ENST00000449544	CD109	Q6YHK3	1445 aa		11.98	□□□□□ -0.49
HCG18-238	ENST00000449544	AFAP1	Q8N556	730 aa		11.98	□□□□□ -0.49
HCG18-238	ENST00000449544	POGK	Q9P215	609 aa		11.97	□□□□□ -0.49
HCG18-238	ENST00000449544	ABCA10	Q8WWZ4	1543 aa		11.97	□□□□□ -0.49
HCG18-238	ENST00000449544	DMRT2	Q9Y5R5	561 aa		11.97	□□□□□ -0.49
HCG18-238	ENST00000449544	MEX3C	Q5U5Q3	659 aa	Known RBP	11.96	□□□□□ -0.49
HCG18-238	ENST00000449544	WDR62	O43379	1518 aa		11.96	□□□□□ -0.5
HCG18-238	ENST00000449544	CEP162	Q5TB80	1403 aa		11.96	□□□□□ -0.5
HCG18-238	ENST00000449544	CCDC9	Q9Y3X0	531 aa	Known RBP	11.95	□□□□□ -0.5
HCG18-238	ENST00000449544	KIF21A	Q7Z4S6	1674 aa		11.95	□□□□□ -0.5
HCG18-238	ENST00000449544	CCDC18	Q5T9S5	1454 aa		11.94	□□□□□ -0.5
HCG18-238	ENST00000449544	PIP4K2B	P78356	416 aa		11.94	□□□□□ -0.5
HCG18-238	ENST00000449544	TRIM26	Q12899	539 aa	Predicted RBP	11.92	□□□□□ -0.5
HCG18-238	ENST00000449544	RUSC2	Q8N2Y8	1516 aa		11.9	□□□□□ -0.5
HCG18-238	ENST00000449544	PLB1	Q6P1J6	1458 aa		11.9	□□□□□ -0.5
HCG18-238	ENST00000449544	PRDM2	Q13029	1718 aa		11.89	□□□□□ -0.51
HCG18-238	ENST00000449544	THEMIS	Q8N1K5	641 aa	Predicted RBP	11.88	□□□□□ -0.51
HCG18-238	ENST00000449544	NEFM	P07197	916 aa		11.88	□□□□□ -0.51
HCG18-238	ENST00000449544	NUTM2D	Q5VT03	806 aa	Predicted RBP	11.87	□□□□□ -0.51
HCG18-238	ENST00000449544	STK26	Q9P289	416 aa		11.87	□□□□□ -0.51
HCG18-238	ENST00000449544	TEX14	Q8IWB6	1497 aa		11.86	□□□□□ -0.51
HCG18-238	ENST00000449544	SCAPER	Q9BY12	1400 aa		11.85	□□□□□ -0.51
HCG18-238	ENST00000449544	ANKLE2	Q86XL3	938 aa		11.85	□□□□□ -0.51
HCG18-238	ENST00000449544	ANKRD30A	Q9BXX3	1397 aa		11.85	□□□□□ -0.51
HCG18-238	ENST00000449544	CEBPA	P49715	358 aa	Predicted RBP	11.85	□□□□□ -0.51
HCG18-238	ENST00000449544	ARHGEF11	O15085	1522 aa		11.84	□□□□□ -0.51
HCG18-238	ENST00000449544	NPM2	Q86SE8	214 aa	Known RBP	11.84	□□□□□ -0.51
HCG18-238	ENST00000449544	ATF3	P18847	181 aa		11.84	□□□□□ -0.51
HCG18-238	ENST00000449544	SAFB2	Q14151	953 aa	Known RBP eCLIP	11.84	□□□□□ -0.51	1e-6	■■■□□ 15.2
HCG18-238	ENST00000449544	HSPA2	P54652	639 aa		11.83	□□□□□ -0.51
HCG18-238	ENST00000449544	ERICH3	Q5RHP9	1530 aa		11.83	□□□□□ -0.52
HCG18-238	ENST00000449544	PROSER2	Q86WR7	435 aa	Predicted RBP	11.83	□□□□□ -0.52
HCG18-238	ENST00000449544	ASXL2	Q76L83	1435 aa		11.83	□□□□□ -0.52
HCG18-238	ENST00000449544	TXNDC2	Q86VQ3	553 aa		11.82	□□□□□ -0.52
HCG18-238	ENST00000449544	TOP2B	Q02880	1626 aa		11.82	□□□□□ -0.52
HCG18-238	ENST00000449544	ACIN1	Q9UKV3	1341 aa	Known RBP	11.82	□□□□□ -0.52
HCG18-238	ENST00000449544	UBAP1L	F5GYI3	381 aa		11.82	□□□□□ -0.52
HCG18-238	ENST00000449544	PAK3	O75914	559 aa	Predicted RBP	11.82	□□□□□ -0.52
HCG18-238	ENST00000449544	TMC1	Q8TDI8	760 aa		11.82	□□□□□ -0.52

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