RNA–Protein interactions for RNA: ENST00000449544.5

HCG18-238, Transcript of HLA complex group 18, human

TSL 2 BASIC

Gene HCG18, Length 4,262 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HCG18-238	ENST00000449544	DCAF8L2	P0C7V8	631 aa		16.68	■□□□□ 0.26
HCG18-238	ENST00000449544	NISCH	Q9Y2I1	1504 aa		16.66	■□□□□ 0.26
HCG18-238	ENST00000449544	ABCC9	O60706	1549 aa		15.28	■□□□□ 0.04
HCG18-238	ENST00000449544	SHROOM4	Q9ULL8	1493 aa		14.91	□□□□□ -0.02
HCG18-238	ENST00000449544	PABPN1	Q86U42	306 aa	Known RBP eCLIP	14.85	□□□□□ -0.03
HCG18-238	ENST00000449544	SUPT5H	O00267	1087 aa	Known RBP	14.63	□□□□□ -0.07
HCG18-238	ENST00000449544	FAM9A	Q8IZU1	332 aa	Predicted RBP	14.27	□□□□□ -0.13
HCG18-238	ENST00000449544	CCDC180	Q9P1Z9	1646 aa		14.13	□□□□□ -0.15
HCG18-238	ENST00000449544	RB1CC1	Q8TDY2	1594 aa		14.12	□□□□□ -0.15
HCG18-238	ENST00000449544	EHMT2	Q96KQ7	1210 aa		14	□□□□□ -0.17
HCG18-238	ENST00000449544	SCRIB	Q14160	1630 aa		13.96	□□□□□ -0.17
HCG18-238	ENST00000449544	FBLN2	P98095	1184 aa		13.93	□□□□□ -0.18
HCG18-238	ENST00000449544	TTBK1	Q5TCY1	1321 aa	Predicted RBP	13.88	□□□□□ -0.19
HCG18-238	ENST00000449544	NACAD	O15069	1562 aa		13.88	□□□□□ -0.19
HCG18-238	ENST00000449544	RANGAP1	P46060	587 aa	Predicted RBP	13.83	□□□□□ -0.2
HCG18-238	ENST00000449544	ATP1B4	Q9UN42	357 aa	Predicted RBP	13.77	□□□□□ -0.2
HCG18-238	ENST00000449544	ERCC6	Q03468	1493 aa		13.71	□□□□□ -0.22
HCG18-238	ENST00000449544	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	13.67	□□□□□ -0.22
HCG18-238	ENST00000449544	HNRNPUL2	Q1KMD3	747 aa	Known RBP	13.67	□□□□□ -0.22
HCG18-238	ENST00000449544	TRIM41	Q8WV44	630 aa		13.66	□□□□□ -0.22
HCG18-238	ENST00000449544	ZCCHC6	Q5VYS8	1495 aa	Known RBP	13.65	□□□□□ -0.23
HCG18-238	ENST00000449544	APLP2	Q06481	763 aa		13.64	□□□□□ -0.23
HCG18-238	ENST00000449544	MYT1L	Q9UL68	1186 aa		13.63	□□□□□ -0.23
HCG18-238	ENST00000449544	CECR2	Q9BXF3	1484 aa		13.58	□□□□□ -0.24
HCG18-238	ENST00000449544	UBTF	P17480	764 aa	Known RBP	13.54	□□□□□ -0.24
HCG18-238	ENST00000449544	DNAJC5B	Q9UF47	199 aa		13.51	□□□□□ -0.25
HCG18-238	ENST00000449544	NPM1	P06748	294 aa	Known RBP eCLIP	13.5	□□□□□ -0.25
HCG18-238	ENST00000449544	TRH	P20396	242 aa	Predicted RBP	13.47	□□□□□ -0.25
HCG18-238	ENST00000449544	CHMP7	Q8WUX9	453 aa	Predicted RBP	13.43	□□□□□ -0.26
HCG18-238	ENST00000449544	BAZ1B	Q9UIG0	1483 aa	Known RBP	13.39	□□□□□ -0.27
HCG18-238	ENST00000449544	PDS5B	Q9NTI5	1447 aa		13.26	□□□□□ -0.29
HCG18-238	ENST00000449544	DCAF1	Q9Y4B6	1507 aa		13.25	□□□□□ -0.29
HCG18-238	ENST00000449544	MYO15B	Q96JP2	1530 aa		13.21	□□□□□ -0.29
HCG18-238	ENST00000449544	CHIC1	Q5VXU3	224 aa		13.21	□□□□□ -0.29
HCG18-238	ENST00000449544	ARID3C	A6NKF2	412 aa		13.17	□□□□□ -0.3
HCG18-238	ENST00000449544	PLPPR3	Q6T4P5	718 aa		13.16	□□□□□ -0.3
HCG18-238	ENST00000449544	OSCAR	Q8IYS5	282 aa		13.15	□□□□□ -0.3
HCG18-238	ENST00000449544	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	13.13	□□□□□ -0.31
HCG18-238	ENST00000449544	AEBP2	Q6ZN18	517 aa	Predicted RBP	13.12	□□□□□ -0.31
HCG18-238	ENST00000449544	ESF1	Q9H501	851 aa	Known RBP	13.11	□□□□□ -0.31
HCG18-238	ENST00000449544	SMARCA2	P51531	1590 aa		13.1	□□□□□ -0.31
HCG18-238	ENST00000449544	CYB5RL	Q6IPT4	315 aa		13.08	□□□□□ -0.31
HCG18-238	ENST00000449544	P3H3	Q8IVL6	736 aa		13.08	□□□□□ -0.31
HCG18-238	ENST00000449544	EIF4G1	Q04637	1599 aa	Known RBP	13.05	□□□□□ -0.32
HCG18-238	ENST00000449544	CADPS	Q9ULU8	1353 aa		13.03	□□□□□ -0.32
HCG18-238	ENST00000449544	CC2D2A	Q9P2K1	1620 aa		13	□□□□□ -0.33
HCG18-238	ENST00000449544	ATAD2B	Q9ULI0	1458 aa		12.99	□□□□□ -0.33
HCG18-238	ENST00000449544	RSF1	Q96T23	1441 aa	Predicted RBP	12.97	□□□□□ -0.33
HCG18-238	ENST00000449544	KCNH8	Q96L42	1107 aa		12.96	□□□□□ -0.33
HCG18-238	ENST00000449544	CDK11A	Q9UQ88	783 aa	Predicted RBP	12.96	□□□□□ -0.33
HCG18-238	ENST00000449544	ARID4B	Q4LE39	1312 aa	Predicted RBP	12.93	□□□□□ -0.34
HCG18-238	ENST00000449544	CEP164	Q9UPV0	1460 aa		12.91	□□□□□ -0.34
HCG18-238	ENST00000449544	TDRD9	Q8NDG6	1382 aa	Known RBP	12.89	□□□□□ -0.35
HCG18-238	ENST00000449544	ZNF777	Q9ULD5	760 aa	Predicted RBP	12.88	□□□□□ -0.35
HCG18-238	ENST00000449544	ITGAE	P38570	1179 aa		12.87	□□□□□ -0.35
HCG18-238	ENST00000449544	NCAPD3	P42695	1498 aa		12.86	□□□□□ -0.35
HCG18-238	ENST00000449544	BCAN	Q96GW7	911 aa		12.86	□□□□□ -0.35
HCG18-238	ENST00000449544	CSRNP3	Q8WYN3	585 aa		12.86	□□□□□ -0.35
HCG18-238	ENST00000449544	MROH2B	Q7Z745	1585 aa		12.86	□□□□□ -0.35
HCG18-238	ENST00000449544	SOGA1	O94964	1423 aa		12.82	□□□□□ -0.36
HCG18-238	ENST00000449544	FANCD2	Q9BXW9	1451 aa		12.81	□□□□□ -0.36
HCG18-238	ENST00000449544	WRN	Q14191	1432 aa	Predicted RBP eCLIP	12.78	□□□□□ -0.36
HCG18-238	ENST00000449544	PLEKHD1	A6NEE1	506 aa		12.76	□□□□□ -0.37
HCG18-238	ENST00000449544	NES	P48681	1621 aa		12.76	□□□□□ -0.37
HCG18-238	ENST00000449544	STAG3	Q9UJ98	1225 aa		12.74	□□□□□ -0.37
HCG18-238	ENST00000449544	BICRA	Q9NZM4	1560 aa		12.74	□□□□□ -0.37
HCG18-238	ENST00000449544	SMARCA4	P51532	1647 aa		12.73	□□□□□ -0.37
HCG18-238	ENST00000449544	PPARGC1B	Q86YN6	1023 aa	Known RBP	12.72	□□□□□ -0.37
HCG18-238	ENST00000449544	KIF27	Q86VH2	1401 aa		12.7	□□□□□ -0.38
HCG18-238	ENST00000449544	FAM50A	Q14320	339 aa	Known RBP	12.7	□□□□□ -0.38
HCG18-238	ENST00000449544	CUX2	O14529	1486 aa		12.7	□□□□□ -0.38
HCG18-238	ENST00000449544	CCDC88B	A6NC98	1476 aa		12.68	□□□□□ -0.38
HCG18-238	ENST00000449544	JPH4	Q96JJ6	628 aa		12.67	□□□□□ -0.38
HCG18-238	ENST00000449544	ABCC8	Q09428	1581 aa		12.66	□□□□□ -0.38
HCG18-238	ENST00000449544	MLEC	Q14165	292 aa		12.65	□□□□□ -0.38
HCG18-238	ENST00000449544	MRC2	Q9UBG0	1479 aa		12.65	□□□□□ -0.38
HCG18-238	ENST00000449544	CARMIL2	Q6F5E8	1435 aa		12.64	□□□□□ -0.39
HCG18-238	ENST00000449544	FAM69C	Q0P6D2	419 aa		12.64	□□□□□ -0.39
HCG18-238	ENST00000449544	LOC105371045	A0A1W2PR82	267 aa		12.62	□□□□□ -0.39
HCG18-238	ENST00000449544	DNAJC5	Q9H3Z4	198 aa		12.6	□□□□□ -0.39
HCG18-238	ENST00000449544	CHGA	P10645	457 aa	Known RBP	12.59	□□□□□ -0.39
HCG18-238	ENST00000449544	WIZ	O95785	1651 aa		12.58	□□□□□ -0.39
HCG18-238	ENST00000449544	CARMIL1	Q5VZK9	1371 aa		12.58	□□□□□ -0.4
HCG18-238	ENST00000449544	TRIM52	Q96A61	297 aa		12.58	□□□□□ -0.4
HCG18-238	ENST00000449544	TSPY4	P0CV99	314 aa		12.58	□□□□□ -0.4
HCG18-238	ENST00000449544	TSPY10	P0CW01	314 aa		12.58	□□□□□ -0.4
HCG18-238	ENST00000449544	AQR	O60306	1485 aa	Known RBP eCLIP	12.57	□□□□□ -0.4
HCG18-238	ENST00000449544	TOP2A	P11388	1531 aa	Known RBP	12.56	□□□□□ -0.4
HCG18-238	ENST00000449544	SCAF1	Q9H7N4	1312 aa	Known RBP	12.54	□□□□□ -0.4
HCG18-238	ENST00000449544	HMGXB3	Q12766	1538 aa		12.53	□□□□□ -0.4
HCG18-238	ENST00000449544	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	12.51	□□□□□ -0.41	2e-6	■■□□□ 11.6
HCG18-238	ENST00000449544	SLC4A1AP	Q9BWU0	796 aa	Known RBP	12.5	□□□□□ -0.41
HCG18-238	ENST00000449544	C14orf37	Q86TY3	774 aa		12.49	□□□□□ -0.41
HCG18-238	ENST00000449544	IFT140	Q96RY7	1462 aa		12.48	□□□□□ -0.41
HCG18-238	ENST00000449544	PTPRG	P23470	1445 aa		12.48	□□□□□ -0.41
HCG18-238	ENST00000449544	MTUS2	Q5JR59	1369 aa		12.47	□□□□□ -0.41
HCG18-238	ENST00000449544	RAD54L2	Q9Y4B4	1467 aa		12.46	□□□□□ -0.41
HCG18-238	ENST00000449544	LAMC3	Q9Y6N6	1575 aa		12.45	□□□□□ -0.42
HCG18-238	ENST00000449544	GAPVD1	Q14C86	1478 aa		12.45	□□□□□ -0.42
HCG18-238	ENST00000449544	CFTR	P13569	1480 aa		12.44	□□□□□ -0.42

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