RNA–Protein interactions for RNA: ENST00000445265.6

TCOF1-206, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,825 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-206ENST00000445265 SIN3AQ96ST3 1273 aa22.69■■□□□ 1.22
TCOF1-206ENST00000445265 SLC4A1APQ9BWU0 796 aaKnown RBP22.68■■□□□ 1.22
TCOF1-206ENST00000445265 RAPGEF2Q9Y4G8 1499 aa22.68■■□□□ 1.22
TCOF1-206ENST00000445265 ATAD2BQ9ULI0 1458 aa22.67■■□□□ 1.22
TCOF1-206ENST00000445265 MRS2Q9HD23 443 aa22.66■■□□□ 1.22
TCOF1-206ENST00000445265 SETD5Q9C0A6 1442 aa22.65■■□□□ 1.22
TCOF1-206ENST00000445265 ANP32AP39687 249 aaKnown RBP22.64■■□□□ 1.21
TCOF1-206ENST00000445265 SUPT16HQ9Y5B9 1047 aaKnown RBP22.6■■□□□ 1.21
TCOF1-206ENST00000445265 TMC1Q8TDI8 760 aa22.56■■□□□ 1.2
TCOF1-206ENST00000445265 RAB3GAP2Q9H2M9 1393 aa22.55■■□□□ 1.2
TCOF1-206ENST00000445265 TSPY4P0CV99 314 aa22.55■■□□□ 1.2
TCOF1-206ENST00000445265 TSPY10P0CW01 314 aa22.55■■□□□ 1.2
TCOF1-206ENST00000445265 ARHGAP35Q9NRY4 1499 aa22.52■■□□□ 1.19
TCOF1-206ENST00000445265 CCER2I3L3R5 266 aa22.49■■□□□ 1.19
TCOF1-206ENST00000445265 DHX57Q6P158 1386 aaKnown RBP22.49■■□□□ 1.19
TCOF1-206ENST00000445265 CCDC136Q96JN2 1154 aa22.48■■□□□ 1.19
TCOF1-206ENST00000445265 IRX6P78412 446 aaPredicted RBP22.47■■□□□ 1.19
TCOF1-206ENST00000445265 CHMP7Q8WUX9 453 aaPredicted RBP22.46■■□□□ 1.19
TCOF1-206ENST00000445265 KDM2AQ9Y2K7 1162 aa22.4■■□□□ 1.18
TCOF1-206ENST00000445265 FMN1Q68DA7 1419 aa22.4■■□□□ 1.18
TCOF1-206ENST00000445265 CANXP27824 592 aaKnown RBP22.38■■□□□ 1.17
TCOF1-206ENST00000445265 CFDP1Q9UEE9 299 aaPredicted RBP22.38■■□□□ 1.17
TCOF1-206ENST00000445265 CADPSQ9ULU8 1353 aa22.38■■□□□ 1.17
TCOF1-206ENST00000445265 NPM2Q86SE8 214 aaKnown RBP22.36■■□□□ 1.17
TCOF1-206ENST00000445265 ANP32EQ9BTT0 268 aa22.36■■□□□ 1.17
TCOF1-206ENST00000445265 PLEKHD1A6NEE1 506 aa22.36■■□□□ 1.17
TCOF1-206ENST00000445265 KIF21BO75037 1637 aa22.35■■□□□ 1.17
TCOF1-206ENST00000445265 PPP1R15AO75807 674 aaPredicted RBP22.35■■□□□ 1.17
TCOF1-206ENST00000445265 SALL2Q9Y467 1007 aaPredicted RBP22.33■■□□□ 1.17
TCOF1-206ENST00000445265 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.32■■□□□ 1.163e-8■■■■□ 21
TCOF1-206ENST00000445265 PPP4R2Q9NY27 417 aa22.28■■□□□ 1.16
TCOF1-206ENST00000445265 ZBTB47Q9UFB7 747 aaPredicted RBP22.27■■□□□ 1.16
TCOF1-206ENST00000445265 EIF4G1Q04637 1599 aaKnown RBP22.27■■□□□ 1.16
TCOF1-206ENST00000445265 FHOD3Q2V2M9 1422 aa22.25■■□□□ 1.15
TCOF1-206ENST00000445265 HSPA5P11021 654 aaKnown RBP22.23■■□□□ 1.15
TCOF1-206ENST00000445265 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.22■■□□□ 1.15
TCOF1-206ENST00000445265 CARD11Q9BXL7 1154 aa22.22■■□□□ 1.15
TCOF1-206ENST00000445265 WDR43Q15061 677 aaKnown RBP eCLIP22.22■■□□□ 1.157e-6■■■■■ 27.3
TCOF1-206ENST00000445265 SYNJ1O43426 1573 aa22.22■■□□□ 1.15
TCOF1-206ENST00000445265 TDRD9Q8NDG6 1382 aaKnown RBP22.19■■□□□ 1.14
TCOF1-206ENST00000445265 ERICH3Q5RHP9 1530 aa22.19■■□□□ 1.14
TCOF1-206ENST00000445265 IGF1RP08069 1367 aa22.17■■□□□ 1.14
TCOF1-206ENST00000445265 PDS5BQ9NTI5 1447 aa22.17■■□□□ 1.14
TCOF1-206ENST00000445265 NEFMP07197 916 aa22.16■■□□□ 1.14
TCOF1-206ENST00000445265 NCAPD3P42695 1498 aa22.14■■□□□ 1.14
TCOF1-206ENST00000445265 MPHOSPH9Q99550 1183 aa22.13■■□□□ 1.13
TCOF1-206ENST00000445265 ERICH6BQ5W0A0 696 aa22.13■■□□□ 1.13
TCOF1-206ENST00000445265 NBR1Q14596 966 aa22.12■■□□□ 1.13
TCOF1-206ENST00000445265 RGL3Q3MIN7 710 aa22.12■■□□□ 1.13
TCOF1-206ENST00000445265 CHGAP10645 457 aaKnown RBP22.11■■□□□ 1.13
TCOF1-206ENST00000445265 TSHZ2Q9NRE2 1034 aa22.1■■□□□ 1.13
TCOF1-206ENST00000445265 RBM19Q9Y4C8 960 aaKnown RBP22.08■■□□□ 1.13
TCOF1-206ENST00000445265 RRBP1Q9P2E9 1410 aaKnown RBP22.07■■□□□ 1.12
TCOF1-206ENST00000445265 PRXQ9BXM0 1461 aa22.07■■□□□ 1.12
TCOF1-206ENST00000445265 FANCD2Q9BXW9 1451 aa22.07■■□□□ 1.12
TCOF1-206ENST00000445265 ARAP1Q96P48 1450 aa22.06■■□□□ 1.12
TCOF1-206ENST00000445265 FGD5Q6ZNL6 1462 aa22.05■■□□□ 1.12
TCOF1-206ENST00000445265 CDCA8Q53HL2 280 aa22.04■■□□□ 1.12
TCOF1-206ENST00000445265 UPF2Q9HAU5 1272 aaKnown RBP22.04■■□□□ 1.12
TCOF1-206ENST00000445265 TOP2BQ02880 1626 aa22.04■■□□□ 1.12
TCOF1-206ENST00000445265 FOXD1Q16676 465 aa22.03■■□□□ 1.12
TCOF1-206ENST00000445265 B4GALNT3Q6L9W6 998 aa22.03■■□□□ 1.12
TCOF1-206ENST00000445265 KCNH8Q96L42 1107 aa22.03■■□□□ 1.12
TCOF1-206ENST00000445265 L3MBTL2Q969R5 705 aa22.01■■□□□ 1.11
TCOF1-206ENST00000445265 LRRC9Q6ZRR7 1453 aa22.01■■□□□ 1.11
TCOF1-206ENST00000445265 CCDC18Q5T9S5 1454 aa21.99■■□□□ 1.11
TCOF1-206ENST00000445265 PKD2Q13563 968 aa21.99■■□□□ 1.11
TCOF1-206ENST00000445265 NPM1P06748 294 aaKnown RBP eCLIP21.99■■□□□ 1.11
TCOF1-206ENST00000445265 PHLDB1Q86UU1 1377 aa21.99■■□□□ 1.11
TCOF1-206ENST00000445265 SENP3-EIF4A1A0A087X0R7 540 aa21.99■■□□□ 1.11
TCOF1-206ENST00000445265 KNSTRNQ9Y448 316 aa21.99■■□□□ 1.11
TCOF1-206ENST00000445265 DCAF11Q8TEB1 546 aa21.98■■□□□ 1.11
TCOF1-206ENST00000445265 CFTRP13569 1480 aa21.96■■□□□ 1.11
TCOF1-206ENST00000445265 DDRGK1Q96HY6 314 aa21.95■■□□□ 1.1
TCOF1-206ENST00000445265 ERCC6Q03468 1493 aa21.93■■□□□ 1.1
TCOF1-206ENST00000445265 FGD6Q6ZV73 1430 aa21.93■■□□□ 1.1
TCOF1-206ENST00000445265 CARMIL2Q6F5E8 1435 aa21.92■■□□□ 1.1
TCOF1-206ENST00000445265 ANKRD30AQ9BXX3 1397 aa21.92■■□□□ 1.1
TCOF1-206ENST00000445265 NOP58Q9Y2X3 529 aaKnown RBP21.9■■□□□ 1.1
TCOF1-206ENST00000445265 CASKIN1Q8WXD9 1431 aa21.87■■□□□ 1.09
TCOF1-206ENST00000445265 UACAQ9BZF9 1416 aa21.87■■□□□ 1.09
TCOF1-206ENST00000445265 TMF1P82094 1093 aa21.87■■□□□ 1.09
TCOF1-206ENST00000445265 HMGXB3Q12766 1538 aa21.86■■□□□ 1.09
TCOF1-206ENST00000445265 NUP155O75694 1391 aa21.86■■□□□ 1.09
TCOF1-206ENST00000445265 CUX1P39880 1505 aa21.85■■□□□ 1.09
TCOF1-206ENST00000445265 MYOM3Q5VTT5 1437 aa21.85■■□□□ 1.09
TCOF1-206ENST00000445265 RAD54L2Q9Y4B4 1467 aa21.85■■□□□ 1.09
TCOF1-206ENST00000445265 RALBP1Q15311 655 aa21.83■■□□□ 1.09
TCOF1-206ENST00000445265 CC2D1BQ5T0F9 858 aaKnown RBP21.83■■□□□ 1.09
TCOF1-206ENST00000445265 STAG3Q9UJ98 1225 aa21.83■■□□□ 1.09
TCOF1-206ENST00000445265 FYCO1Q9BQS8 1478 aa21.81■■□□□ 1.08
TCOF1-206ENST00000445265 SLC24A1O60721 1099 aa21.81■■□□□ 1.08
TCOF1-206ENST00000445265 KTN1Q86UP2 1357 aaKnown RBP21.81■■□□□ 1.08
TCOF1-206ENST00000445265 GAPVD1Q14C86 1478 aa21.81■■□□□ 1.08
TCOF1-206ENST00000445265 PPM1GO15355 546 aaPredicted RBP21.8■■□□□ 1.08
TCOF1-206ENST00000445265 ROCK2O75116 1388 aaKnown RBP21.8■■□□□ 1.08
TCOF1-206ENST00000445265 BCL11AQ9H165 835 aa21.8■■□□□ 1.08
TCOF1-206ENST00000445265 PRKRIP1Q9H875 184 aaPredicted RBP21.8■■□□□ 1.08
TCOF1-206ENST00000445265 NUDCQ9Y266 331 aa21.79■■□□□ 1.08
TCOF1-206ENST00000445265 PEG3Q9GZU2 1588 aa21.78■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 240.6 ms