RNA–Protein interactions for RNA: ENST00000442971.1

SSXP3-201, Transcript of SSX family pseudogene 3, humanhuman

BASIC

Gene SSXP3, Length 1,300 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSXP3-201ENST00000442971 RAD54L2Q9Y4B4 1467 aa14.81□□□□□ -0.04
SSXP3-201ENST00000442971 PLPPR3Q6T4P5 718 aa14.81□□□□□ -0.04
SSXP3-201ENST00000442971 WDR97A6NE52 1622 aa14.78□□□□□ -0.04
SSXP3-201ENST00000442971 GRIN2BQ13224 1484 aa14.78□□□□□ -0.04
SSXP3-201ENST00000442971 SOGA1O94964 1423 aa14.76□□□□□ -0.05
SSXP3-201ENST00000442971 SHROOM2Q13796 1616 aa14.69□□□□□ -0.06
SSXP3-201ENST00000442971 COL17A1Q9UMD9 1497 aaPredicted RBP14.69□□□□□ -0.06
SSXP3-201ENST00000442971 PPRC1Q5VV67 1664 aaKnown RBP14.65□□□□□ -0.06
SSXP3-201ENST00000442971 PCF11O94913 1555 aaKnown RBP14.64□□□□□ -0.07
SSXP3-201ENST00000442971 ADCY10Q96PN6 1610 aa14.61□□□□□ -0.07
SSXP3-201ENST00000442971 PBRM1Q86U86 1689 aa14.61□□□□□ -0.07
SSXP3-201ENST00000442971 NUP160Q12769 1436 aa14.59□□□□□ -0.07
SSXP3-201ENST00000442971 GRIN2AQ12879 1464 aa14.59□□□□□ -0.07
SSXP3-201ENST00000442971 PRG4Q92954 1404 aaPredicted RBP14.58□□□□□ -0.07
SSXP3-201ENST00000442971 PTPRMP28827 1452 aa14.57□□□□□ -0.08
SSXP3-201ENST00000442971 TOP2AP11388 1531 aaKnown RBP14.55□□□□□ -0.08
SSXP3-201ENST00000442971 FGD5Q6ZNL6 1462 aa14.52□□□□□ -0.08
SSXP3-201ENST00000442971 HSPA2P54652 639 aa14.51□□□□□ -0.09
SSXP3-201ENST00000442971 GLI2P10070 1586 aa14.5□□□□□ -0.09
SSXP3-201ENST00000442971 JPH4Q96JJ6 628 aa14.47□□□□□ -0.09
SSXP3-201ENST00000442971 KIF21BO75037 1637 aa14.47□□□□□ -0.09
SSXP3-201ENST00000442971 TEX14Q8IWB6 1497 aa14.44□□□□□ -0.1
SSXP3-201ENST00000442971 ADAMTSL3P82987 1691 aa14.44□□□□□ -0.1
SSXP3-201ENST00000442971 CCDC88BA6NC98 1476 aa14.43□□□□□ -0.1
SSXP3-201ENST00000442971 ASXL2Q76L83 1435 aa14.39□□□□□ -0.11
SSXP3-201ENST00000442971 ABCA5Q8WWZ7 1642 aa14.38□□□□□ -0.11
SSXP3-201ENST00000442971 PLB1Q6P1J6 1458 aa14.38□□□□□ -0.11
SSXP3-201ENST00000442971 MAP3K4Q9Y6R4 1608 aa14.38□□□□□ -0.11
SSXP3-201ENST00000442971 ADAMTS12P58397 1594 aa14.37□□□□□ -0.11
SSXP3-201ENST00000442971 MED1Q15648 1581 aaPredicted RBP14.33□□□□□ -0.12
SSXP3-201ENST00000442971 MADDQ8WXG6 1647 aa14.29□□□□□ -0.12
SSXP3-201ENST00000442971 FHAD1B1AJZ9 1412 aa14.29□□□□□ -0.12
SSXP3-201ENST00000442971 KIAA0586Q9BVV6 1533 aa14.29□□□□□ -0.12
SSXP3-201ENST00000442971 EPRSP07814 1512 aaKnown RBP14.28□□□□□ -0.12
SSXP3-201ENST00000442971 CUX1P39880 1505 aa14.28□□□□□ -0.12
SSXP3-201ENST00000442971 ABCA10Q8WWZ4 1543 aa14.27□□□□□ -0.12
SSXP3-201ENST00000442971 ABCC2Q92887 1545 aa14.27□□□□□ -0.12
SSXP3-201ENST00000442971 DMRT2Q9Y5R5 561 aa14.27□□□□□ -0.12
SSXP3-201ENST00000442971 IQSEC2Q5JU85 1478 aa14.25□□□□□ -0.13
SSXP3-201ENST00000442971 BCORL1Q5H9F3 1711 aa14.25□□□□□ -0.13
SSXP3-201ENST00000442971 PPP6R1Q9UPN7 881 aa14.24□□□□□ -0.13
SSXP3-201ENST00000442971 MSH5O43196 834 aa14.23□□□□□ -0.13
SSXP3-201ENST00000442971 PIAS4Q8N2W9 510 aaPredicted RBP14.22□□□□□ -0.13
SSXP3-201ENST00000442971 ADRA2BP18089 450 aa14.21□□□□□ -0.13
SSXP3-201ENST00000442971 CUL7Q14999 1698 aa14.21□□□□□ -0.13
SSXP3-201ENST00000442971 RIMS1Q86UR5 1692 aaKnown RBP14.21□□□□□ -0.13
SSXP3-201ENST00000442971 RUSC2Q8N2Y8 1516 aa14.21□□□□□ -0.14
SSXP3-201ENST00000442971 YEATS2Q9ULM3 1422 aa14.21□□□□□ -0.14
SSXP3-201ENST00000442971 PTPRGP23470 1445 aa14.17□□□□□ -0.14
SSXP3-201ENST00000442971 LTBP4Q8N2S1 1624 aa14.17□□□□□ -0.14
SSXP3-201ENST00000442971 STRCQ7RTU9 1775 aa14.17□□□□□ -0.14
SSXP3-201ENST00000442971 ARID4BQ4LE39 1312 aaPredicted RBP14.16□□□□□ -0.14
SSXP3-201ENST00000442971 UBAP1LF5GYI3 381 aa14.15□□□□□ -0.14
SSXP3-201ENST00000442971 TTBK1Q5TCY1 1321 aaPredicted RBP14.13□□□□□ -0.15
SSXP3-201ENST00000442971 MAGI3Q5TCQ9 1506 aa14.13□□□□□ -0.15
SSXP3-201ENST00000442971 HSPA1LP34931 641 aa14.09□□□□□ -0.15
SSXP3-201ENST00000442971 PTPRTO14522 1441 aa14.09□□□□□ -0.15
SSXP3-201ENST00000442971 CD109Q6YHK3 1445 aa14.09□□□□□ -0.15
SSXP3-201ENST00000442971 CFAP43Q8NDM7 1665 aa14.09□□□□□ -0.15
SSXP3-201ENST00000442971 UHRF1BP1LA0JNW5 1464 aa14.08□□□□□ -0.16
SSXP3-201ENST00000442971 ERICH3Q5RHP9 1530 aa14.07□□□□□ -0.16
SSXP3-201ENST00000442971 ARAP3Q8WWN8 1544 aa14.06□□□□□ -0.16
SSXP3-201ENST00000442971 PREX1Q8TCU6 1659 aa14.03□□□□□ -0.16
SSXP3-201ENST00000442971 KDM5BQ9UGL1 1544 aa14.03□□□□□ -0.16
SSXP3-201ENST00000442971 TNIKQ9UKE5 1360 aa14.01□□□□□ -0.17
SSXP3-201ENST00000442971 UACAQ9BZF9 1416 aa14□□□□□ -0.17
SSXP3-201ENST00000442971 SRCAPQ6ZRS2 3230 aa14□□□□□ -0.17
SSXP3-201ENST00000442971 WDR7Q9Y4E6 1490 aa13.99□□□□□ -0.17
SSXP3-201ENST00000442971 ZCCHC11Q5TAX3 1644 aaKnown RBP13.99□□□□□ -0.17
SSXP3-201ENST00000442971 SCAF1Q9H7N4 1312 aaKnown RBP13.96□□□□□ -0.17
SSXP3-201ENST00000442971 RGS17Q9UGC6 210 aaPredicted RBP13.96□□□□□ -0.17
SSXP3-201ENST00000442971 RAPGEF3O95398 923 aa13.95□□□□□ -0.18
SSXP3-201ENST00000442971 WRNQ14191 1432 aaPredicted RBP eCLIP13.95□□□□□ -0.18
SSXP3-201ENST00000442971 PIP4K2BP78356 416 aa13.92□□□□□ -0.18
SSXP3-201ENST00000442971 KCNH8Q96L42 1107 aa13.92□□□□□ -0.18
SSXP3-201ENST00000442971 TTC37Q6PGP7 1564 aa13.92□□□□□ -0.18
SSXP3-201ENST00000442971 CARMIL2Q6F5E8 1435 aa13.91□□□□□ -0.18
SSXP3-201ENST00000442971 POGZQ7Z3K3 1410 aa13.91□□□□□ -0.18
SSXP3-201ENST00000442971 UHRF1BP1Q6BDS2 1440 aa13.89□□□□□ -0.19
SSXP3-201ENST00000442971 FER1L4A9Z1Z3 1794 aa13.89□□□□□ -0.19
SSXP3-201ENST00000442971 PHLDB1Q86UU1 1377 aa13.88□□□□□ -0.19
SSXP3-201ENST00000442971 ZNF335Q9H4Z2 1342 aaPredicted RBP13.86□□□□□ -0.19
SSXP3-201ENST00000442971 FANCAO15360 1455 aa13.85□□□□□ -0.19
SSXP3-201ENST00000442971 CEBPAP49715 358 aaPredicted RBP13.85□□□□□ -0.19
SSXP3-201ENST00000442971 ARHGEF40Q8TER5 1519 aa13.85□□□□□ -0.19
SSXP3-201ENST00000442971 FRMPD1Q5SYB0 1578 aa13.83□□□□□ -0.19
SSXP3-201ENST00000442971 SETD1BQ9UPS6 1966 aaKnown RBP13.83□□□□□ -0.19
SSXP3-201ENST00000442971 TOM1O60784 492 aa13.83□□□□□ -0.2
SSXP3-201ENST00000442971 MLECQ14165 292 aa13.83□□□□□ -0.2
SSXP3-201ENST00000442971 POTEAQ6S8J7 498 aa13.83□□□□□ -0.2
SSXP3-201ENST00000442971 SETD1AO15047 1707 aaKnown RBP13.81□□□□□ -0.2
SSXP3-201ENST00000442971 IFFO2Q5TF58 517 aa13.8□□□□□ -0.2
SSXP3-201ENST00000442971 NCOA1Q15788 1441 aa13.78□□□□□ -0.2
SSXP3-201ENST00000442971 SIGLEC1Q9BZZ2 1709 aa13.78□□□□□ -0.2
SSXP3-201ENST00000442971 UPF1Q92900 1129 aaKnown RBP eCLIP13.78□□□□□ -0.2
SSXP3-201ENST00000442971 AKNAQ7Z591 1439 aa13.75□□□□□ -0.21
SSXP3-201ENST00000442971 NEO1Q92859 1461 aa13.73□□□□□ -0.21
SSXP3-201ENST00000442971 KIAA0556O60303 1618 aa13.72□□□□□ -0.21
SSXP3-201ENST00000442971 ARHGEF12Q9NZN5 1544 aa13.72□□□□□ -0.21
SSXP3-201ENST00000442971 DISP1Q96F81 1524 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms