RNA–Protein interactions for RNA: ENST00000441443.6

SHOX2-203, Transcript of short stature homeobox 2, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHOX2, Length 3,038 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-203ENST00000441443 FGD5Q6ZNL6 1462 aa28.88■■■□□ 2.21
SHOX2-203ENST00000441443 RRBP1Q9P2E9 1410 aaKnown RBP28.85■■■□□ 2.21
SHOX2-203ENST00000441443 NESP48681 1621 aa28.83■■■□□ 2.21
SHOX2-203ENST00000441443 CARMIL1Q5VZK9 1371 aa28.83■■■□□ 2.21
SHOX2-203ENST00000441443 FANCD2Q9BXW9 1451 aa28.82■■■□□ 2.2
SHOX2-203ENST00000441443 NEFLP07196 543 aa28.81■■■□□ 2.2
SHOX2-203ENST00000441443 DNAJC5BQ9UF47 199 aa28.79■■■□□ 2.2
SHOX2-203ENST00000441443 CCNB3Q8WWL7 1395 aa28.79■■■□□ 2.2
SHOX2-203ENST00000441443 TRIM52Q96A61 297 aa28.78■■■□□ 2.2
SHOX2-203ENST00000441443 ARHGAP35Q9NRY4 1499 aa28.77■■■□□ 2.2
SHOX2-203ENST00000441443 RAD54L2Q9Y4B4 1467 aa28.74■■■□□ 2.19
SHOX2-203ENST00000441443 RAB3GAP2Q9H2M9 1393 aa28.73■■■□□ 2.19
SHOX2-203ENST00000441443 HIRIP3Q9BW71 556 aaPredicted RBP28.71■■■□□ 2.19
SHOX2-203ENST00000441443 MAPKBP1O60336 1514 aa28.69■■■□□ 2.18
SHOX2-203ENST00000441443 SIN3AQ96ST3 1273 aa28.69■■■□□ 2.18
SHOX2-203ENST00000441443 PRDM2Q13029 1718 aa28.68■■■□□ 2.18
SHOX2-203ENST00000441443 MSH5O43196 834 aa28.65■■■□□ 2.18
SHOX2-203ENST00000441443 PPP1R15AO75807 674 aaPredicted RBP28.63■■■□□ 2.17
SHOX2-203ENST00000441443 WDR97A6NE52 1622 aa28.63■■■□□ 2.17
SHOX2-203ENST00000441443 POLA1P09884 1462 aaPredicted RBP28.55■■■□□ 2.16
SHOX2-203ENST00000441443 TOPBP1Q92547 1522 aa28.54■■■□□ 2.16
SHOX2-203ENST00000441443 ANP32CO43423 234 aa28.54■■■□□ 2.16
SHOX2-203ENST00000441443 FAM50AQ14320 339 aaKnown RBP28.53■■■□□ 2.16
SHOX2-203ENST00000441443 TDRD9Q8NDG6 1382 aaKnown RBP28.52■■■□□ 2.16
SHOX2-203ENST00000441443 CCER2I3L3R5 266 aa28.5■■■□□ 2.15
SHOX2-203ENST00000441443 SETD5Q9C0A6 1442 aa28.49■■■□□ 2.15
SHOX2-203ENST00000441443 DNMBPQ6XZF7 1577 aa28.47■■■□□ 2.15
SHOX2-203ENST00000441443 FHOD3Q2V2M9 1422 aa28.47■■■□□ 2.15
SHOX2-203ENST00000441443 IRX6P78412 446 aaPredicted RBP28.44■■■□□ 2.14
SHOX2-203ENST00000441443 ABCA10Q8WWZ4 1543 aa28.39■■■□□ 2.13
SHOX2-203ENST00000441443 ERICH6Q7L0X2 663 aa28.38■■■□□ 2.13
SHOX2-203ENST00000441443 URB2Q14146 1524 aaKnown RBP28.37■■■□□ 2.13
SHOX2-203ENST00000441443 CDK11AQ9UQ88 783 aaPredicted RBP28.34■■■□□ 2.13
SHOX2-203ENST00000441443 FANCIQ9NVI1 1328 aa28.34■■■□□ 2.13
SHOX2-203ENST00000441443 PHLDB1Q86UU1 1377 aa28.33■■■□□ 2.13
SHOX2-203ENST00000441443 FHAD1B1AJZ9 1412 aa28.31■■■□□ 2.12
SHOX2-203ENST00000441443 TIAM1Q13009 1591 aa28.31■■■□□ 2.12
SHOX2-203ENST00000441443 HNRNPUQ00839 825 aaKnown RBP eCLIP28.3■■■□□ 2.12
SHOX2-203ENST00000441443 LRRC9Q6ZRR7 1453 aa28.29■■■□□ 2.12
SHOX2-203ENST00000441443 PDS5BQ9NTI5 1447 aa28.28■■■□□ 2.12
SHOX2-203ENST00000441443 TIMELESSQ9UNS1 1208 aa28.27■■■□□ 2.12
SHOX2-203ENST00000441443 PCF11O94913 1555 aaKnown RBP28.24■■■□□ 2.11
SHOX2-203ENST00000441443 LAMC3Q9Y6N6 1575 aa28.24■■■□□ 2.11
SHOX2-203ENST00000441443 ARID3CA6NKF2 412 aa28.21■■■□□ 2.11
SHOX2-203ENST00000441443 GAPVD1Q14C86 1478 aa28.2■■■□□ 2.1
SHOX2-203ENST00000441443 TONSLQ96HA7 1378 aa28.14■■■□□ 2.1
SHOX2-203ENST00000441443 MTUS2Q5JR59 1369 aa28.11■■■□□ 2.09
SHOX2-203ENST00000441443 MAP3K1Q13233 1512 aa28.1■■■□□ 2.09
SHOX2-203ENST00000441443 CUL7Q14999 1698 aa28.09■■■□□ 2.09
SHOX2-203ENST00000441443 KIF21AQ7Z4S6 1674 aa28.08■■■□□ 2.09
SHOX2-203ENST00000441443 CASKIN1Q8WXD9 1431 aa28.07■■■□□ 2.08
SHOX2-203ENST00000441443 AQRO60306 1485 aaKnown RBP eCLIP28.06■■■□□ 2.081e-7■■□□□ 12.9
SHOX2-203ENST00000441443 FMN1Q68DA7 1419 aa28.05■■■□□ 2.08
SHOX2-203ENST00000441443 DEKP35659 375 aaKnown RBP28.05■■■□□ 2.08
SHOX2-203ENST00000441443 FYCO1Q9BQS8 1478 aa28.04■■■□□ 2.08
SHOX2-203ENST00000441443 PPP4R2Q9NY27 417 aa28.02■■■□□ 2.08
SHOX2-203ENST00000441443 EFCAB5A4FU69 1503 aa28.02■■■□□ 2.08
SHOX2-203ENST00000441443 B4GALNT3Q6L9W6 998 aa28■■■□□ 2.07
SHOX2-203ENST00000441443 CTTNBP2Q8WZ74 1663 aa28■■■□□ 2.07
SHOX2-203ENST00000441443 ABCA5Q8WWZ7 1642 aa27.96■■■□□ 2.07
SHOX2-203ENST00000441443 CFAP43Q8NDM7 1665 aa27.96■■■□□ 2.07
SHOX2-203ENST00000441443 CCDC184Q52MB2 194 aa27.96■■■□□ 2.07
SHOX2-203ENST00000441443 MYT1LQ9UL68 1186 aa27.92■■■□□ 2.06
SHOX2-203ENST00000441443 ERICH6BQ5W0A0 696 aa27.92■■■□□ 2.06
SHOX2-203ENST00000441443 NBR1Q14596 966 aa27.91■■■□□ 2.06
SHOX2-203ENST00000441443 CHIC2Q9UKJ5 165 aa27.91■■■□□ 2.06
SHOX2-203ENST00000441443 WASHC2AQ641Q2 1341 aa27.9■■■□□ 2.06
SHOX2-203ENST00000441443 SNAPC4Q5SXM2 1469 aa27.89■■■□□ 2.06
SHOX2-203ENST00000441443 FGD6Q6ZV73 1430 aa27.88■■■□□ 2.05
SHOX2-203ENST00000441443 FAM9BQ8IZU0 186 aa27.88■■■□□ 2.05
SHOX2-203ENST00000441443 CCDC18Q5T9S5 1454 aa27.87■■■□□ 2.05
SHOX2-203ENST00000441443 HSPA5P11021 654 aaKnown RBP27.86■■■□□ 2.05
SHOX2-203ENST00000441443 FBLN2P98095 1184 aa27.84■■■□□ 2.05
SHOX2-203ENST00000441443 TARBP1Q13395 1621 aaKnown RBP27.83■■■□□ 2.05
SHOX2-203ENST00000441443 PAK3O75914 559 aaPredicted RBP27.83■■■□□ 2.05
SHOX2-203ENST00000441443 RRP7BPQ9NSQ0 103 aa27.83■■■□□ 2.05
SHOX2-203ENST00000441443 NOP58Q9Y2X3 529 aaKnown RBP27.83■■■□□ 2.05
SHOX2-203ENST00000441443 UACAQ9BZF9 1416 aa27.81■■■□□ 2.04
SHOX2-203ENST00000441443 ZNF608Q9ULD9 1512 aaPredicted RBP27.8■■■□□ 2.04
SHOX2-203ENST00000441443 NCOA2Q15596 1464 aa27.8■■■□□ 2.04
SHOX2-203ENST00000441443 MRC2Q9UBG0 1479 aa27.79■■■□□ 2.04
SHOX2-203ENST00000441443 PTPRKQ15262 1439 aa27.79■■■□□ 2.04
SHOX2-203ENST00000441443 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.78■■■□□ 2.04
SHOX2-203ENST00000441443 SAMD9Q5K651 1589 aa27.76■■■□□ 2.03
SHOX2-203ENST00000441443 GRIN2BQ13224 1484 aa27.75■■■□□ 2.03
SHOX2-203ENST00000441443 MRS2Q9HD23 443 aa27.75■■■□□ 2.03
SHOX2-203ENST00000441443 KDM5BQ9UGL1 1544 aa27.74■■■□□ 2.03
SHOX2-203ENST00000441443 HFM1A2PYH4 1435 aa27.72■■■□□ 2.03
SHOX2-203ENST00000441443 MYOM3Q5VTT5 1437 aa27.71■■■□□ 2.03
SHOX2-203ENST00000441443 EIF4G2P78344 907 aaKnown RBP eCLIP27.7■■■□□ 2.027e-7■■□□□ 12.9
SHOX2-203ENST00000441443 PRKRIP1Q9H875 184 aaPredicted RBP27.7■■■□□ 2.02
SHOX2-203ENST00000441443 PRKCSHP14314 528 aaPredicted RBP27.7■■■□□ 2.02
SHOX2-203ENST00000441443 LRRIQ1Q96JM4 1722 aa27.69■■■□□ 2.02
SHOX2-203ENST00000441443 C11orf95C9JLR9 678 aaPredicted RBP27.68■■■□□ 2.02
SHOX2-203ENST00000441443 PTPN23Q9H3S7 1636 aa27.68■■■□□ 2.02
SHOX2-203ENST00000441443 ZBED9Q6R2W3 1325 aa27.68■■■□□ 2.02
SHOX2-203ENST00000441443 ERCC6Q03468 1493 aa27.68■■■□□ 2.02
SHOX2-203ENST00000441443 CNTLNQ9NXG0 1405 aa27.67■■■□□ 2.02
SHOX2-203ENST00000441443 PBRM1Q86U86 1689 aa27.67■■■□□ 2.02
SHOX2-203ENST00000441443 NAIPQ13075 1403 aa27.66■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms