RNA–Protein interactions for RNA: ENST00000441310.6

PMS1-213, Transcript of PMS1 homolog 1, mismatch repair system component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PMS1, Length 3,225 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PMS1-213ENST00000441310 ARAP1Q96P48 1450 aa24.21■■□□□ 1.47
PMS1-213ENST00000441310 RBM19Q9Y4C8 960 aaKnown RBP24.14■■□□□ 1.46
PMS1-213ENST00000441310 TOPBP1Q92547 1522 aa24.14■■□□□ 1.45
PMS1-213ENST00000441310 ATP1B4Q9UN42 357 aaPredicted RBP24.13■■□□□ 1.45
PMS1-213ENST00000441310 POLA1P09884 1462 aaPredicted RBP24.12■■□□□ 1.45
PMS1-213ENST00000441310 FKBP8Q14318 412 aa24.11■■□□□ 1.45
PMS1-213ENST00000441310 ARHGAP35Q9NRY4 1499 aa24.1■■□□□ 1.45
PMS1-213ENST00000441310 TDRD9Q8NDG6 1382 aaKnown RBP24.07■■□□□ 1.44
PMS1-213ENST00000441310 DNMBPQ6XZF7 1577 aa24.07■■□□□ 1.44
PMS1-213ENST00000441310 KCNH8Q96L42 1107 aa24.04■■□□□ 1.44
PMS1-213ENST00000441310 URB2Q14146 1524 aaKnown RBP24.03■■□□□ 1.44
PMS1-213ENST00000441310 ITGAEP38570 1179 aa24.03■■□□□ 1.44
PMS1-213ENST00000441310 PDS5BQ9NTI5 1447 aa23.98■■□□□ 1.43
PMS1-213ENST00000441310 LAMC3Q9Y6N6 1575 aa23.98■■□□□ 1.43
PMS1-213ENST00000441310 MSH5O43196 834 aa23.97■■□□□ 1.43
PMS1-213ENST00000441310 ABCA10Q8WWZ4 1543 aa23.96■■□□□ 1.43
PMS1-213ENST00000441310 NEFLP07196 543 aa23.87■■□□□ 1.41
PMS1-213ENST00000441310 FHOD3Q2V2M9 1422 aa23.87■■□□□ 1.41
PMS1-213ENST00000441310 ERICH6Q7L0X2 663 aa23.86■■□□□ 1.41
PMS1-213ENST00000441310 KIF21AQ7Z4S6 1674 aa23.85■■□□□ 1.41
PMS1-213ENST00000441310 GAPVD1Q14C86 1478 aa23.81■■□□□ 1.4
PMS1-213ENST00000441310 FAM50AQ14320 339 aaKnown RBP23.75■■□□□ 1.39
PMS1-213ENST00000441310 CCNB3Q8WWL7 1395 aa23.75■■□□□ 1.39
PMS1-213ENST00000441310 DHX57Q6P158 1386 aaKnown RBP23.74■■□□□ 1.39
PMS1-213ENST00000441310 AQRO60306 1485 aaKnown RBP eCLIP23.74■■□□□ 1.391e-9■■■■□ 22.4
PMS1-213ENST00000441310 FHAD1B1AJZ9 1412 aa23.7■■□□□ 1.38
PMS1-213ENST00000441310 RRBP1Q9P2E9 1410 aaKnown RBP23.68■■□□□ 1.38
PMS1-213ENST00000441310 TIAM1Q13009 1591 aa23.68■■□□□ 1.38
PMS1-213ENST00000441310 CUL7Q14999 1698 aa23.67■■□□□ 1.38
PMS1-213ENST00000441310 DEKP35659 375 aaKnown RBP23.66■■□□□ 1.38
PMS1-213ENST00000441310 TRIM52Q96A61 297 aa23.66■■□□□ 1.38
PMS1-213ENST00000441310 PCF11O94913 1555 aaKnown RBP23.66■■□□□ 1.38
PMS1-213ENST00000441310 PHLDB1Q86UU1 1377 aa23.66■■□□□ 1.38
PMS1-213ENST00000441310 ARID3CA6NKF2 412 aa23.65■■□□□ 1.38
PMS1-213ENST00000441310 LRRC9Q6ZRR7 1453 aa23.65■■□□□ 1.38
PMS1-213ENST00000441310 WDR97A6NE52 1622 aa23.65■■□□□ 1.38
PMS1-213ENST00000441310 ABCA5Q8WWZ7 1642 aa23.64■■□□□ 1.37
PMS1-213ENST00000441310 ANO8Q9HCE9 1232 aaPredicted RBP23.63■■□□□ 1.37
PMS1-213ENST00000441310 FANCIQ9NVI1 1328 aa23.62■■□□□ 1.37
PMS1-213ENST00000441310 MRC2Q9UBG0 1479 aa23.6■■□□□ 1.37
PMS1-213ENST00000441310 DDX10Q13206 875 aaKnown RBP23.59■■□□□ 1.37
PMS1-213ENST00000441310 TARBP1Q13395 1621 aaKnown RBP23.59■■□□□ 1.37
PMS1-213ENST00000441310 ZNF608Q9ULD9 1512 aaPredicted RBP23.56■■□□□ 1.36
PMS1-213ENST00000441310 CTTNBP2Q8WZ74 1663 aa23.56■■□□□ 1.36
PMS1-213ENST00000441310 CDK11AQ9UQ88 783 aaPredicted RBP23.54■■□□□ 1.36
PMS1-213ENST00000441310 CASKIN1Q8WXD9 1431 aa23.53■■□□□ 1.36
PMS1-213ENST00000441310 ERCC6Q03468 1493 aa23.53■■□□□ 1.36
PMS1-213ENST00000441310 EFCAB5A4FU69 1503 aa23.52■■□□□ 1.36
PMS1-213ENST00000441310 FMN1Q68DA7 1419 aa23.51■■□□□ 1.35
PMS1-213ENST00000441310 MTUS2Q5JR59 1369 aa23.5■■□□□ 1.35
PMS1-213ENST00000441310 FBLN2P98095 1184 aa23.5■■□□□ 1.35
PMS1-213ENST00000441310 MAP3K1Q13233 1512 aa23.5■■□□□ 1.35
PMS1-213ENST00000441310 MYT1LQ9UL68 1186 aa23.5■■□□□ 1.35
PMS1-213ENST00000441310 RAB3GAP2Q9H2M9 1393 aa23.5■■□□□ 1.35
PMS1-213ENST00000441310 FYCO1Q9BQS8 1478 aa23.49■■□□□ 1.35
PMS1-213ENST00000441310 IRX6P78412 446 aaPredicted RBP23.49■■□□□ 1.35
PMS1-213ENST00000441310 GRIN2BQ13224 1484 aa23.42■■□□□ 1.34
PMS1-213ENST00000441310 SNAPC4Q5SXM2 1469 aa23.42■■□□□ 1.34
PMS1-213ENST00000441310 NBR1Q14596 966 aa23.41■■□□□ 1.34
PMS1-213ENST00000441310 CFAP43Q8NDM7 1665 aa23.41■■□□□ 1.34
PMS1-213ENST00000441310 PBRM1Q86U86 1689 aa23.4■■□□□ 1.34
PMS1-213ENST00000441310 SALL2Q9Y467 1007 aaPredicted RBP23.38■■□□□ 1.33
PMS1-213ENST00000441310 SETD5Q9C0A6 1442 aa23.37■■□□□ 1.33
PMS1-213ENST00000441310 IFT140Q96RY7 1462 aa23.37■■□□□ 1.33
PMS1-213ENST00000441310 SAMD9Q5K651 1589 aa23.36■■□□□ 1.33
PMS1-213ENST00000441310 HIRIP3Q9BW71 556 aaPredicted RBP23.35■■□□□ 1.33
PMS1-213ENST00000441310 CHMP7Q8WUX9 453 aaPredicted RBP23.35■■□□□ 1.33
PMS1-213ENST00000441310 SIN3AQ96ST3 1273 aa23.35■■□□□ 1.33
PMS1-213ENST00000441310 ADAMTS12P58397 1594 aa23.33■■□□□ 1.33
PMS1-213ENST00000441310 WDR62O43379 1518 aa23.32■■□□□ 1.32
PMS1-213ENST00000441310 ANP32CO43423 234 aa23.31■■□□□ 1.32
PMS1-213ENST00000441310 CCDC136Q96JN2 1154 aa23.31■■□□□ 1.32
PMS1-213ENST00000441310 IQGAP2Q13576 1575 aa23.31■■□□□ 1.32
PMS1-213ENST00000441310 FGD6Q6ZV73 1430 aa23.3■■□□□ 1.32
PMS1-213ENST00000441310 CHIC2Q9UKJ5 165 aa23.29■■□□□ 1.32
PMS1-213ENST00000441310 PPP1R15AO75807 674 aaPredicted RBP23.28■■□□□ 1.32
PMS1-213ENST00000441310 LRRIQ1Q96JM4 1722 aa23.27■■□□□ 1.32
PMS1-213ENST00000441310 CCER2I3L3R5 266 aa23.27■■□□□ 1.32
PMS1-213ENST00000441310 NCOA2Q15596 1464 aa23.27■■□□□ 1.32
PMS1-213ENST00000441310 CDK13Q14004 1512 aaKnown RBP23.23■■□□□ 1.31
PMS1-213ENST00000441310 EIF4G3O43432 1585 aaKnown RBP23.22■■□□□ 1.31
PMS1-213ENST00000441310 RRP7BPQ9NSQ0 103 aa23.22■■□□□ 1.31
PMS1-213ENST00000441310 NOP58Q9Y2X3 529 aaKnown RBP23.22■■□□□ 1.31
PMS1-213ENST00000441310 PTPRKQ15262 1439 aa23.22■■□□□ 1.31
PMS1-213ENST00000441310 MAGI3Q5TCQ9 1506 aa23.21■■□□□ 1.31
PMS1-213ENST00000441310 PAK3O75914 559 aaPredicted RBP23.2■■□□□ 1.3
PMS1-213ENST00000441310 HNRNPUQ00839 825 aaKnown RBP eCLIP23.2■■□□□ 1.3
PMS1-213ENST00000441310 RTN4Q9NQC3 1192 aaKnown RBP23.19■■□□□ 1.3
PMS1-213ENST00000441310 MAPKBP1O60336 1514 aa23.19■■□□□ 1.3
PMS1-213ENST00000441310 GRIN2AQ12879 1464 aa23.18■■□□□ 1.3
PMS1-213ENST00000441310 MYOM3Q5VTT5 1437 aa23.18■■□□□ 1.3
PMS1-213ENST00000441310 EPRSP07814 1512 aaKnown RBP23.16■■□□□ 1.3
PMS1-213ENST00000441310 KIAA0586Q9BVV6 1533 aa23.16■■□□□ 1.3
PMS1-213ENST00000441310 ERICH6BQ5W0A0 696 aa23.16■■□□□ 1.3
PMS1-213ENST00000441310 IL27Q8NEV9 243 aa23.15■■□□□ 1.3
PMS1-213ENST00000441310 THOC2Q8NI27 1593 aaKnown RBP23.13■■□□□ 1.29
PMS1-213ENST00000441310 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.13■■□□□ 1.29
PMS1-213ENST00000441310 B4GALNT3Q6L9W6 998 aa23.11■■□□□ 1.29
PMS1-213ENST00000441310 PPP4R2Q9NY27 417 aa23.11■■□□□ 1.29
PMS1-213ENST00000441310 DISP1Q96F81 1524 aa23.11■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 74.4 ms