RNA–Protein interactions for RNA: ENST00000434472.6

CD44-210, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 1,634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-210ENST00000434472 LRRC9Q6ZRR7 1453 aa15.36■□□□□ 0.05
CD44-210ENST00000434472 CFAP43Q8NDM7 1665 aa15.36■□□□□ 0.05
CD44-210ENST00000434472 AQRO60306 1485 aaKnown RBP eCLIP15.36■□□□□ 0.05
CD44-210ENST00000434472 WDR97A6NE52 1622 aa15.35■□□□□ 0.05
CD44-210ENST00000434472 URB2Q14146 1524 aaKnown RBP15.34■□□□□ 0.05
CD44-210ENST00000434472 CTTNBP2Q8WZ74 1663 aa15.34■□□□□ 0.05
CD44-210ENST00000434472 ACIN1Q9UKV3 1341 aaKnown RBP15.33■□□□□ 0.05
CD44-210ENST00000434472 FYCO1Q9BQS8 1478 aa15.33■□□□□ 0.04
CD44-210ENST00000434472 PCF11O94913 1555 aaKnown RBP15.31■□□□□ 0.04
CD44-210ENST00000434472 CASKIN1Q8WXD9 1431 aa15.31■□□□□ 0.04
CD44-210ENST00000434472 SCAF1Q9H7N4 1312 aaKnown RBP15.3■□□□□ 0.04
CD44-210ENST00000434472 ABCA5Q8WWZ7 1642 aa15.3■□□□□ 0.04
CD44-210ENST00000434472 FMN1Q68DA7 1419 aa15.28■□□□□ 0.04
CD44-210ENST00000434472 FHOD3Q2V2M9 1422 aa15.27■□□□□ 0.03
CD44-210ENST00000434472 GAPVD1Q14C86 1478 aa15.27■□□□□ 0.03
CD44-210ENST00000434472 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.25■□□□□ 0.03
CD44-210ENST00000434472 PHLDB1Q86UU1 1377 aa15.24■□□□□ 0.03
CD44-210ENST00000434472 SETD5Q9C0A6 1442 aa15.24■□□□□ 0.03
CD44-210ENST00000434472 P3H3Q8IVL6 736 aa15.24■□□□□ 0.03
CD44-210ENST00000434472 NEUROD1Q13562 356 aa15.22■□□□□ 0.03
CD44-210ENST00000434472 RAB3GAP2Q9H2M9 1393 aa15.22■□□□□ 0.03
CD44-210ENST00000434472 SAMD9Q5K651 1589 aa15.22■□□□□ 0.03
CD44-210ENST00000434472 TDRD9Q8NDG6 1382 aaKnown RBP15.21■□□□□ 0.03
CD44-210ENST00000434472 ITGAEP38570 1179 aa15.21■□□□□ 0.02
CD44-210ENST00000434472 KIF21AQ7Z4S6 1674 aa15.2■□□□□ 0.02
CD44-210ENST00000434472 ATP1B4Q9UN42 357 aaPredicted RBP15.2■□□□□ 0.02
CD44-210ENST00000434472 THOC2Q8NI27 1593 aaKnown RBP15.19■□□□□ 0.02
CD44-210ENST00000434472 TARBP1Q13395 1621 aaKnown RBP15.18■□□□□ 0.02
CD44-210ENST00000434472 SNAPC4Q5SXM2 1469 aa15.18■□□□□ 0.02
CD44-210ENST00000434472 FAM50AQ14320 339 aaKnown RBP15.17■□□□□ 0.02
CD44-210ENST00000434472 MIER1Q8N108 512 aa15.16■□□□□ 0.02
CD44-210ENST00000434472 MAPKBP1O60336 1514 aa15.13■□□□□ 0.01
CD44-210ENST00000434472 TIMELESSQ9UNS1 1208 aa15.13■□□□□ 0.01
CD44-210ENST00000434472 MTUS2Q5JR59 1369 aa15.13■□□□□ 0.01
CD44-210ENST00000434472 GRIN2BQ13224 1484 aa15.12■□□□□ 0.01
CD44-210ENST00000434472 MRC2Q9UBG0 1479 aa15.12■□□□□ 0.01
CD44-210ENST00000434472 PELP1Q8IZL8 1130 aaKnown RBP15.12■□□□□ 0.01
CD44-210ENST00000434472 FGD6Q6ZV73 1430 aa15.11■□□□□ 0.01
CD44-210ENST00000434472 PBRM1Q86U86 1689 aa15.1■□□□□ 0.01
CD44-210ENST00000434472 DNAJC5BQ9UF47 199 aa15.1■□□□□ 0.01
CD44-210ENST00000434472 EHBP1L1Q8N3D4 1523 aa15.09■□□□□ 0.01
CD44-210ENST00000434472 CCDC18Q5T9S5 1454 aa15.09■□□□□ 0.01
CD44-210ENST00000434472 ADAMTS12P58397 1594 aa15.07■□□□□ 0
CD44-210ENST00000434472 GTF3C3Q9Y5Q9 886 aa15.07■□□□□ 0
CD44-210ENST00000434472 SUPT6HQ7KZ85 1726 aaKnown RBP15.07■□□□□ 0
CD44-210ENST00000434472 MYOM3Q5VTT5 1437 aa15.05■□□□□ 0
CD44-210ENST00000434472 NCOA2Q15596 1464 aa15.05■□□□□ -0
CD44-210ENST00000434472 IFT140Q96RY7 1462 aa15.05■□□□□ -0
CD44-210ENST00000434472 IQGAP2Q13576 1575 aa15.05■□□□□ -0
CD44-210ENST00000434472 HECW1Q76N89 1606 aa15.04■□□□□ -0
CD44-210ENST00000434472 LRRIQ1Q96JM4 1722 aa15.03■□□□□ -0
CD44-210ENST00000434472 YTHDC1Q96MU7 727 aaKnown RBP15.02□□□□□ -0.01
CD44-210ENST00000434472 HFM1A2PYH4 1435 aa15.01□□□□□ -0.01
CD44-210ENST00000434472 ARHGEF11O15085 1522 aa15.01□□□□□ -0.01
CD44-210ENST00000434472 UGGT2Q9NYU1 1516 aa15.01□□□□□ -0.01
CD44-210ENST00000434472 WDR62O43379 1518 aa15□□□□□ -0.01
CD44-210ENST00000434472 TCOF1Q13428 1488 aaKnown RBP14.98□□□□□ -0.01
CD44-210ENST00000434472 UACAQ9BZF9 1416 aa14.97□□□□□ -0.01
CD44-210ENST00000434472 PTPN23Q9H3S7 1636 aa14.97□□□□□ -0.01
CD44-210ENST00000434472 EPRSP07814 1512 aaKnown RBP14.95□□□□□ -0.02
CD44-210ENST00000434472 KIAA0586Q9BVV6 1533 aa14.94□□□□□ -0.02
CD44-210ENST00000434472 MIA2Q96PC5 1412 aa14.94□□□□□ -0.02
CD44-210ENST00000434472 SIN3AQ96ST3 1273 aa14.94□□□□□ -0.02
CD44-210ENST00000434472 PTPRKQ15262 1439 aa14.93□□□□□ -0.02
CD44-210ENST00000434472 MAGI3Q5TCQ9 1506 aa14.93□□□□□ -0.02
CD44-210ENST00000434472 NAIPQ13075 1403 aa14.93□□□□□ -0.02
CD44-210ENST00000434472 AKNAQ7Z591 1439 aa14.93□□□□□ -0.02
CD44-210ENST00000434472 PPP1R15AO75807 674 aaPredicted RBP14.92□□□□□ -0.02
CD44-210ENST00000434472 ZNF608Q9ULD9 1512 aaPredicted RBP14.9□□□□□ -0.02
CD44-210ENST00000434472 KIAA0556O60303 1618 aa14.89□□□□□ -0.03
CD44-210ENST00000434472 TONSLQ96HA7 1378 aa14.89□□□□□ -0.03
CD44-210ENST00000434472 GRIN2AQ12879 1464 aa14.87□□□□□ -0.03
CD44-210ENST00000434472 GCC2Q8IWJ2 1684 aa14.87□□□□□ -0.03
CD44-210ENST00000434472 MAGI1Q96QZ7 1491 aaPredicted RBP14.86□□□□□ -0.03
CD44-210ENST00000434472 EIF4G3O43432 1585 aaKnown RBP14.86□□□□□ -0.03
CD44-210ENST00000434472 CDK13Q14004 1512 aaKnown RBP14.85□□□□□ -0.03
CD44-210ENST00000434472 DISP1Q96F81 1524 aa14.85□□□□□ -0.03
CD44-210ENST00000434472 CDK11AQ9UQ88 783 aaPredicted RBP14.84□□□□□ -0.03
CD44-210ENST00000434472 ERCC6Q03468 1493 aa14.83□□□□□ -0.03
CD44-210ENST00000434472 RAPGEF6Q8TEU7 1601 aa14.82□□□□□ -0.04
CD44-210ENST00000434472 ROCK1Q13464 1354 aa14.81□□□□□ -0.04
CD44-210ENST00000434472 SYNJ2O15056 1496 aa14.8□□□□□ -0.04
CD44-210ENST00000434472 NUP153P49790 1475 aaKnown RBP14.79□□□□□ -0.04
CD44-210ENST00000434472 RRP7BPQ9NSQ0 103 aa14.78□□□□□ -0.04
CD44-210ENST00000434472 DDX10Q13206 875 aaKnown RBP14.77□□□□□ -0.05
CD44-210ENST00000434472 CARMIL2Q6F5E8 1435 aa14.76□□□□□ -0.05
CD44-210ENST00000434472 CHMP7Q8WUX9 453 aaPredicted RBP14.76□□□□□ -0.05
CD44-210ENST00000434472 CHIC2Q9UKJ5 165 aa14.76□□□□□ -0.05
CD44-210ENST00000434472 DAPK1P53355 1430 aa14.76□□□□□ -0.05
CD44-210ENST00000434472 DNMT1P26358 1616 aaKnown RBP14.76□□□□□ -0.05
CD44-210ENST00000434472 TRIM52Q96A61 297 aa14.75□□□□□ -0.05
CD44-210ENST00000434472 CCER2I3L3R5 266 aa14.74□□□□□ -0.05
CD44-210ENST00000434472 TROQ12816 1431 aaPredicted RBP14.74□□□□□ -0.05
CD44-210ENST00000434472 CEP170Q5SW79 1584 aa14.74□□□□□ -0.05
CD44-210ENST00000434472 NUP160Q12769 1436 aa14.73□□□□□ -0.05
CD44-210ENST00000434472 ITSN2Q9NZM3 1697 aa14.72□□□□□ -0.05
CD44-210ENST00000434472 ABCC5O15440 1437 aa14.71□□□□□ -0.05
CD44-210ENST00000434472 KDM5BQ9UGL1 1544 aa14.71□□□□□ -0.05
CD44-210ENST00000434472 ANP32CO43423 234 aa14.71□□□□□ -0.05
CD44-210ENST00000434472 MPHOSPH9Q99550 1183 aa14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms